data_5Z7B # _model_server_result.job_id UlgMtoD04BZBhbOOw7j2YA _model_server_result.datetime_utc '2024-11-23 13:41:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5Z7B # _exptl.entry_id 5Z7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 167.139 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-HYDROXY-3-METHOXYBENZOATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z7B _cell.length_a 34.771 _cell.length_b 62.397 _cell.length_c 183.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C8 H7 O4 -1' _chem_comp.formula_weight 167.139 _chem_comp.id VNL _chem_comp.mon_nstd_flag . _chem_comp.name 4-HYDROXY-3-METHOXYBENZOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms vanillate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CO1 VNL doub 363 n y C1 CO2 VNL sing 364 n y C1 CC VNL sing 365 n n CO1 CM1 VNL sing 366 n y CO1 HO1 VNL sing 367 n n CO2 CM2 VNL doub 368 n y CO2 HO2 VNL sing 369 n n CM1 CZ VNL doub 370 n y CM1 HM1 VNL sing 371 n n CM2 OM VNL sing 372 n n CM2 CZ VNL sing 373 n y OM CV VNL sing 374 n n CZ O3 VNL sing 375 n n CC O1 VNL sing 376 n n CC O2 VNL doub 377 n n CV HV1 VNL sing 378 n n CV HV2 VNL sing 379 n n CV HV3 VNL sing 380 n n O3 HO3 VNL sing 381 n n # _atom_sites.entry_id 5Z7B _atom_sites.fract_transf_matrix[1][1] 0.02876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VNL A 1 201 1 VNL VNL . D 2 VNL B 1 201 2 VNL VNL . E 3 HOH A 1 301 139 HOH HOH . E 3 HOH A 2 302 81 HOH HOH . E 3 HOH A 3 303 175 HOH HOH . E 3 HOH A 4 304 98 HOH HOH . E 3 HOH A 5 305 79 HOH HOH . E 3 HOH A 6 306 92 HOH HOH . E 3 HOH A 7 307 83 HOH HOH . E 3 HOH A 8 308 18 HOH HOH . E 3 HOH A 9 309 125 HOH HOH . E 3 HOH A 10 310 127 HOH HOH . E 3 HOH A 11 311 183 HOH HOH . E 3 HOH A 12 312 112 HOH HOH . E 3 HOH A 13 313 73 HOH HOH . E 3 HOH A 14 314 122 HOH HOH . E 3 HOH A 15 315 176 HOH HOH . E 3 HOH A 16 316 132 HOH HOH . E 3 HOH A 17 317 113 HOH HOH . E 3 HOH A 18 318 173 HOH HOH . E 3 HOH A 19 319 58 HOH HOH . E 3 HOH A 20 320 31 HOH HOH . E 3 HOH A 21 321 180 HOH HOH . E 3 HOH A 22 322 76 HOH HOH . E 3 HOH A 23 323 53 HOH HOH . E 3 HOH A 24 324 60 HOH HOH . E 3 HOH A 25 325 23 HOH HOH . E 3 HOH A 26 326 27 HOH HOH . E 3 HOH A 27 327 186 HOH HOH . E 3 HOH A 28 328 33 HOH HOH . E 3 HOH A 29 329 36 HOH HOH . E 3 HOH A 30 330 54 HOH HOH . E 3 HOH A 31 331 138 HOH HOH . E 3 HOH A 32 332 32 HOH HOH . E 3 HOH A 33 333 134 HOH HOH . E 3 HOH A 34 334 3 HOH HOH . E 3 HOH A 35 335 22 HOH HOH . E 3 HOH A 36 336 34 HOH HOH . E 3 HOH A 37 337 49 HOH HOH . E 3 HOH A 38 338 26 HOH HOH . E 3 HOH A 39 339 116 HOH HOH . E 3 HOH A 40 340 44 HOH HOH . E 3 HOH A 41 341 86 HOH HOH . E 3 HOH A 42 342 114 HOH HOH . E 3 HOH A 43 343 85 HOH HOH . E 3 HOH A 44 344 11 HOH HOH . E 3 HOH A 45 345 154 HOH HOH . E 3 HOH A 46 346 126 HOH HOH . E 3 HOH A 47 347 99 HOH HOH . E 3 HOH A 48 348 13 HOH HOH . E 3 HOH A 49 349 37 HOH HOH . E 3 HOH A 50 350 28 HOH HOH . E 3 HOH A 51 351 66 HOH HOH . E 3 HOH A 52 352 59 HOH HOH . E 3 HOH A 53 353 130 HOH HOH . E 3 HOH A 54 354 1 HOH HOH . E 3 HOH A 55 355 80 HOH HOH . E 3 HOH A 56 356 109 HOH HOH . E 3 HOH A 57 357 9 HOH HOH . E 3 HOH A 58 358 65 HOH HOH . E 3 HOH A 59 359 190 HOH HOH . E 3 HOH A 60 360 46 HOH HOH . E 3 HOH A 61 361 124 HOH HOH . E 3 HOH A 62 362 43 HOH HOH . E 3 HOH A 63 363 191 HOH HOH . E 3 HOH A 64 364 143 HOH HOH . E 3 HOH A 65 365 12 HOH HOH . E 3 HOH A 66 366 24 HOH HOH . E 3 HOH A 67 367 87 HOH HOH . E 3 HOH A 68 368 123 HOH HOH . E 3 HOH A 69 369 161 HOH HOH . E 3 HOH A 70 370 178 HOH HOH . E 3 HOH A 71 371 2 HOH HOH . E 3 HOH A 72 372 100 HOH HOH . E 3 HOH A 73 373 101 HOH HOH . E 3 HOH A 74 374 17 HOH HOH . E 3 HOH A 75 375 108 HOH HOH . E 3 HOH A 76 376 16 HOH HOH . E 3 HOH A 77 377 67 HOH HOH . E 3 HOH A 78 378 193 HOH HOH . E 3 HOH A 79 379 196 HOH HOH . E 3 HOH A 80 380 55 HOH HOH . E 3 HOH A 81 381 29 HOH HOH . E 3 HOH A 82 382 50 HOH HOH . E 3 HOH A 83 383 77 HOH HOH . E 3 HOH A 84 384 136 HOH HOH . E 3 HOH A 85 385 107 HOH HOH . E 3 HOH A 86 386 111 HOH HOH . E 3 HOH A 87 387 106 HOH HOH . E 3 HOH A 88 388 70 HOH HOH . E 3 HOH A 89 389 75 HOH HOH . E 3 HOH A 90 390 165 HOH HOH . E 3 HOH A 91 391 97 HOH HOH . E 3 HOH A 92 392 163 HOH HOH . E 3 HOH A 93 393 115 HOH HOH . F 3 HOH B 1 301 168 HOH HOH . F 3 HOH B 2 302 42 HOH HOH . F 3 HOH B 3 303 135 HOH HOH . F 3 HOH B 4 304 160 HOH HOH . F 3 HOH B 5 305 169 HOH HOH . F 3 HOH B 6 306 149 HOH HOH . F 3 HOH B 7 307 189 HOH HOH . F 3 HOH B 8 308 20 HOH HOH . F 3 HOH B 9 309 179 HOH HOH . F 3 HOH B 10 310 188 HOH HOH . F 3 HOH B 11 311 105 HOH HOH . F 3 HOH B 12 312 56 HOH HOH . F 3 HOH B 13 313 182 HOH HOH . F 3 HOH B 14 314 157 HOH HOH . F 3 HOH B 15 315 35 HOH HOH . F 3 HOH B 16 316 96 HOH HOH . F 3 HOH B 17 317 140 HOH HOH . F 3 HOH B 18 318 145 HOH HOH . F 3 HOH B 19 319 120 HOH HOH . F 3 HOH B 20 320 93 HOH HOH . F 3 HOH B 21 321 167 HOH HOH . F 3 HOH B 22 322 7 HOH HOH . F 3 HOH B 23 323 30 HOH HOH . F 3 HOH B 24 324 159 HOH HOH . F 3 HOH B 25 325 95 HOH HOH . F 3 HOH B 26 326 192 HOH HOH . F 3 HOH B 27 327 57 HOH HOH . F 3 HOH B 28 328 194 HOH HOH . F 3 HOH B 29 329 82 HOH HOH . F 3 HOH B 30 330 119 HOH HOH . F 3 HOH B 31 331 89 HOH HOH . F 3 HOH B 32 332 71 HOH HOH . F 3 HOH B 33 333 69 HOH HOH . F 3 HOH B 34 334 102 HOH HOH . F 3 HOH B 35 335 15 HOH HOH . F 3 HOH B 36 336 6 HOH HOH . F 3 HOH B 37 337 110 HOH HOH . F 3 HOH B 38 338 74 HOH HOH . F 3 HOH B 39 339 144 HOH HOH . F 3 HOH B 40 340 38 HOH HOH . F 3 HOH B 41 341 156 HOH HOH . F 3 HOH B 42 342 25 HOH HOH . F 3 HOH B 43 343 141 HOH HOH . F 3 HOH B 44 344 5 HOH HOH . F 3 HOH B 45 345 166 HOH HOH . F 3 HOH B 46 346 64 HOH HOH . F 3 HOH B 47 347 61 HOH HOH . F 3 HOH B 48 348 88 HOH HOH . F 3 HOH B 49 349 103 HOH HOH . F 3 HOH B 50 350 91 HOH HOH . F 3 HOH B 51 351 48 HOH HOH . F 3 HOH B 52 352 142 HOH HOH . F 3 HOH B 53 353 4 HOH HOH . F 3 HOH B 54 354 63 HOH HOH . F 3 HOH B 55 355 62 HOH HOH . F 3 HOH B 56 356 51 HOH HOH . F 3 HOH B 57 357 21 HOH HOH . F 3 HOH B 58 358 39 HOH HOH . F 3 HOH B 59 359 10 HOH HOH . F 3 HOH B 60 360 84 HOH HOH . F 3 HOH B 61 361 8 HOH HOH . F 3 HOH B 62 362 185 HOH HOH . F 3 HOH B 63 363 195 HOH HOH . F 3 HOH B 64 364 197 HOH HOH . F 3 HOH B 65 365 78 HOH HOH . F 3 HOH B 66 366 155 HOH HOH . F 3 HOH B 67 367 68 HOH HOH . F 3 HOH B 68 368 121 HOH HOH . F 3 HOH B 69 369 90 HOH HOH . F 3 HOH B 70 370 129 HOH HOH . F 3 HOH B 71 371 19 HOH HOH . F 3 HOH B 72 372 150 HOH HOH . F 3 HOH B 73 373 41 HOH HOH . F 3 HOH B 74 374 40 HOH HOH . F 3 HOH B 75 375 47 HOH HOH . F 3 HOH B 76 376 52 HOH HOH . F 3 HOH B 77 377 147 HOH HOH . F 3 HOH B 78 378 118 HOH HOH . F 3 HOH B 79 379 181 HOH HOH . F 3 HOH B 80 380 104 HOH HOH . F 3 HOH B 81 381 164 HOH HOH . F 3 HOH B 82 382 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VNL . . . C 2 36.751 -3.571 10.776 1 12.92 ? C1 VNL 201 A 1 HETATM 2 C CO1 VNL . . . C 2 35.602 -4.278 11.123 1 13.44 ? CO1 VNL 201 A 1 HETATM 3 C CO2 VNL . . . C 2 37.267 -2.573 11.621 1 12.3 ? CO2 VNL 201 A 1 HETATM 4 C CM1 VNL . . . C 2 34.95 -4.025 12.321 1 14.17 ? CM1 VNL 201 A 1 HETATM 5 C CM2 VNL . . . C 2 36.619 -2.28 12.836 1 12.02 ? CM2 VNL 201 A 1 HETATM 6 O OM VNL . . . C 2 37.074 -1.322 13.71 1 14.71 ? OM VNL 201 A 1 HETATM 7 C CZ VNL . . . C 2 35.408 -3.04 13.191 1 13.32 ? CZ VNL 201 A 1 HETATM 8 C CC VNL . . . C 2 37.394 -3.906 9.47 1 13.07 ? CC VNL 201 A 1 HETATM 9 C CV VNL . . . C 2 38.394 -0.775 13.609 1 11.05 ? CV VNL 201 A 1 HETATM 10 O O1 VNL . . . C 2 37.371 -5.047 9.003 1 13.98 ? O1 VNL 201 A 1 HETATM 11 O O2 VNL . . . C 2 38.05 -2.854 8.737 1 12.09 ? O2 VNL 201 A 1 HETATM 12 O O3 VNL . . . C 2 34.724 -2.807 14.352 1 13.61 ? O3 VNL 201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #