data_5Z7F
#
_model_server_result.job_id            -EmZYh93uAh-BpvZEyDn9Q 
_model_server_result.datetime_utc      '2025-01-10 18:15:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5z7f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5Z7F 
#
_exptl.entry_id    5Z7F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.61 
_cell.angle_gamma         90 
_cell.entry_id            5Z7F 
_cell.length_a            35.003 
_cell.length_b            28.516 
_cell.length_c            62.696 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Z7F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc2 B FE HEM . A HEM 201 1_555 C S H2S . A H2S 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 131 n n 
CHA C4D HEM doub 132 n n 
CHA HHA HEM sing 133 n n 
CHB C4A HEM sing 134 n n 
CHB C1B HEM doub 135 n n 
CHB HHB HEM sing 136 n n 
CHC C4B HEM sing 137 n n 
CHC C1C HEM doub 138 n n 
CHC HHC HEM sing 139 n n 
CHD C4C HEM doub 140 n n 
CHD C1D HEM sing 141 n n 
CHD HHD HEM sing 142 n n 
C1A C2A HEM doub 143 n y 
C1A NA HEM sing 144 n y 
C2A C3A HEM sing 145 n y 
C2A CAA HEM sing 146 n n 
C3A C4A HEM doub 147 n y 
C3A CMA HEM sing 148 n n 
C4A NA HEM sing 149 n y 
CMA HMA HEM sing 150 n n 
CMA HMAA HEM sing 151 n n 
CMA HMAB HEM sing 152 n n 
CAA CBA HEM sing 153 n n 
CAA HAA HEM sing 154 n n 
CAA HAAA HEM sing 155 n n 
CBA CGA HEM sing 156 n n 
CBA HBA HEM sing 157 n n 
CBA HBAA HEM sing 158 n n 
CGA O1A HEM doub 159 n n 
CGA O2A HEM sing 160 n n 
C1B C2B HEM sing 161 n n 
C1B NB HEM sing 162 n n 
C2B C3B HEM doub 163 n n 
C2B CMB HEM sing 164 n n 
C3B C4B HEM sing 165 n n 
C3B CAB HEM sing 166 n n 
C4B NB HEM doub 167 n n 
CMB HMB HEM sing 168 n n 
CMB HMBA HEM sing 169 n n 
CMB HMBB HEM sing 170 n n 
CAB CBB HEM doub 171 n n 
CAB HAB HEM sing 172 n n 
CBB HBB HEM sing 173 n n 
CBB HBBA HEM sing 174 n n 
C1C C2C HEM sing 175 n y 
C1C NC HEM sing 176 n y 
C2C C3C HEM doub 177 n y 
C2C CMC HEM sing 178 n n 
C3C C4C HEM sing 179 n y 
C3C CAC HEM sing 180 n n 
C4C NC HEM sing 181 n y 
CMC HMC HEM sing 182 n n 
CMC HMCA HEM sing 183 n n 
CMC HMCB HEM sing 184 n n 
CAC CBC HEM doub 185 n n 
CAC HAC HEM sing 186 n n 
CBC HBC HEM sing 187 n n 
CBC HBCA HEM sing 188 n n 
C1D C2D HEM sing 189 n n 
C1D ND HEM doub 190 n n 
C2D C3D HEM doub 191 n n 
C2D CMD HEM sing 192 n n 
C3D C4D HEM sing 193 n n 
C3D CAD HEM sing 194 n n 
C4D ND HEM sing 195 n n 
CMD HMD HEM sing 196 n n 
CMD HMDA HEM sing 197 n n 
CMD HMDB HEM sing 198 n n 
CAD CBD HEM sing 199 n n 
CAD HAD HEM sing 200 n n 
CAD HADA HEM sing 201 n n 
CBD CGD HEM sing 202 n n 
CBD HBD HEM sing 203 n n 
CBD HBDA HEM sing 204 n n 
CGD O1D HEM doub 205 n n 
CGD O2D HEM sing 206 n n 
O2A H2A HEM sing 207 n n 
O2D H2D HEM sing 208 n n 
FE NA HEM sing 209 n n 
FE NB HEM sing 210 n n 
FE NC HEM sing 211 n n 
FE ND HEM sing 212 n n 
#
_atom_sites.entry_id                     5Z7F 
_atom_sites.fract_transf_matrix[1][1]    0.028569 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007984 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.035068 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016561 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 201 154 HEM HEM . 
C 3 H2S A 1 202 1 H2S H2S . 
D 4 NO2 A 1 203 2 NO2 NO2 . 
E 5 SO4 A 1 204 3 SO4 SO4 . 
F 5 SO4 A 1 205 4 SO4 SO4 . 
G 6 GOL A 1 206 5 GOL GOL . 
H 7 HOH A 1 301 10 HOH HOH . 
H 7 HOH A 2 302 35 HOH HOH . 
H 7 HOH A 3 303 40 HOH HOH . 
H 7 HOH A 4 304 43 HOH HOH . 
H 7 HOH A 5 305 18 HOH HOH . 
H 7 HOH A 6 306 37 HOH HOH . 
H 7 HOH A 7 307 52 HOH HOH . 
H 7 HOH A 8 308 46 HOH HOH . 
H 7 HOH A 9 309 48 HOH HOH . 
H 7 HOH A 10 310 32 HOH HOH . 
H 7 HOH A 11 311 49 HOH HOH . 
H 7 HOH A 12 312 25 HOH HOH . 
H 7 HOH A 13 313 30 HOH HOH . 
H 7 HOH A 14 314 13 HOH HOH . 
H 7 HOH A 15 315 54 HOH HOH . 
H 7 HOH A 16 316 50 HOH HOH . 
H 7 HOH A 17 317 22 HOH HOH . 
H 7 HOH A 18 318 16 HOH HOH . 
H 7 HOH A 19 319 5 HOH HOH . 
H 7 HOH A 20 320 38 HOH HOH . 
H 7 HOH A 21 321 15 HOH HOH . 
H 7 HOH A 22 322 42 HOH HOH . 
H 7 HOH A 23 323 33 HOH HOH . 
H 7 HOH A 24 324 12 HOH HOH . 
H 7 HOH A 25 325 53 HOH HOH . 
H 7 HOH A 26 326 45 HOH HOH . 
H 7 HOH A 27 327 56 HOH HOH . 
H 7 HOH A 28 328 8 HOH HOH . 
H 7 HOH A 29 329 23 HOH HOH . 
H 7 HOH A 30 330 1 HOH HOH . 
H 7 HOH A 31 331 11 HOH HOH . 
H 7 HOH A 32 332 34 HOH HOH . 
H 7 HOH A 33 333 7 HOH HOH . 
H 7 HOH A 34 334 19 HOH HOH . 
H 7 HOH A 35 335 14 HOH HOH . 
H 7 HOH A 36 336 29 HOH HOH . 
H 7 HOH A 37 337 9 HOH HOH . 
H 7 HOH A 38 338 4 HOH HOH . 
H 7 HOH A 39 339 17 HOH HOH . 
H 7 HOH A 40 340 31 HOH HOH . 
H 7 HOH A 41 341 27 HOH HOH . 
H 7 HOH A 42 342 2 HOH HOH . 
H 7 HOH A 43 343 3 HOH HOH . 
H 7 HOH A 44 344 41 HOH HOH . 
H 7 HOH A 45 345 51 HOH HOH . 
H 7 HOH A 46 346 44 HOH HOH . 
H 7 HOH A 47 347 20 HOH HOH . 
H 7 HOH A 48 348 36 HOH HOH . 
H 7 HOH A 49 349 6 HOH HOH . 
H 7 HOH A 50 350 24 HOH HOH . 
H 7 HOH A 51 351 39 HOH HOH . 
H 7 HOH A 52 352 28 HOH HOH . 
H 7 HOH A 53 353 21 HOH HOH . 
H 7 HOH A 54 354 26 HOH HOH . 
H 7 HOH A 55 355 47 HOH HOH . 
H 7 HOH A 56 356 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -0.479 9.373 16.337 1 10.54 ? CHA HEM 201 A 1 
HETATM 2 C CHB HEM . . . B 2 -4.118 6.327 15.195 1 10.05 ? CHB HEM 201 A 1 
HETATM 3 C CHC HEM . . . B 2 -0.893 2.975 13.694 1 11.47 ? CHC HEM 201 A 1 
HETATM 4 C CHD HEM . . . B 2 2.664 5.97 14.898 1 11.61 ? CHD HEM 201 A 1 
HETATM 5 C C1A HEM . . . B 2 -1.711 8.786 16.141 1 10.33 ? C1A HEM 201 A 1 
HETATM 6 C C2A HEM . . . B 2 -2.953 9.46 16.399 1 10.29 ? C2A HEM 201 A 1 
HETATM 7 C C3A HEM . . . B 2 -3.965 8.63 16.087 1 10.3 ? C3A HEM 201 A 1 
HETATM 8 C C4A HEM . . . B 2 -3.382 7.402 15.615 1 10.05 ? C4A HEM 201 A 1 
HETATM 9 C CMA HEM . . . B 2 -5.472 8.905 16.247 1 10.21 ? CMA HEM 201 A 1 
HETATM 10 C CAA HEM . . . B 2 -3.091 10.876 16.927 1 10.74 ? CAA HEM 201 A 1 
HETATM 11 C CBA HEM . . . B 2 -3.599 11.797 15.807 1 12.16 ? CBA HEM 201 A 1 
HETATM 12 C CGA HEM . . . B 2 -2.678 11.949 14.617 1 13.06 ? CGA HEM 201 A 1 
HETATM 13 O O1A HEM . . . B 2 -1.477 12.27 14.763 1 13.1 ? O1A HEM 201 A 1 
HETATM 14 O O2A HEM . . . B 2 -3.157 11.691 13.469 1 13.33 ? O2A HEM 201 A 1 
HETATM 15 C C1B HEM . . . B 2 -3.562 5.139 14.684 1 10.96 ? C1B HEM 201 A 1 
HETATM 16 C C2B HEM . . . B 2 -4.301 3.986 14.216 1 11.47 ? C2B HEM 201 A 1 
HETATM 17 C C3B HEM . . . B 2 -3.409 3.055 13.781 1 11.85 ? C3B HEM 201 A 1 
HETATM 18 C C4B HEM . . . B 2 -2.092 3.654 13.971 1 11.79 ? C4B HEM 201 A 1 
HETATM 19 C CMB HEM . . . B 2 -5.805 3.845 14.216 1 11.73 ? CMB HEM 201 A 1 
HETATM 20 C CAB HEM . . . B 2 -3.58 1.676 13.275 1 13.43 ? CAB HEM 201 A 1 
HETATM 21 C CBB HEM . . . B 2 -4.711 0.987 13.333 1 16.35 ? CBB HEM 201 A 1 
HETATM 22 C C1C HEM . . . B 2 0.401 3.491 13.93 1 11.25 ? C1C HEM 201 A 1 
HETATM 23 C C2C HEM . . . B 2 1.624 2.797 13.801 1 11.37 ? C2C HEM 201 A 1 
HETATM 24 C C3C HEM . . . B 2 2.626 3.651 14.148 1 11.63 ? C3C HEM 201 A 1 
HETATM 25 C C4C HEM . . . B 2 1.989 4.88 14.497 1 10.87 ? C4C HEM 201 A 1 
HETATM 26 C CMC HEM . . . B 2 1.791 1.361 13.318 1 11.74 ? CMC HEM 201 A 1 
HETATM 27 C CAC HEM . . . B 2 4.121 3.478 14.209 1 12.29 ? CAC HEM 201 A 1 
HETATM 28 C CBC HEM . . . B 2 4.763 2.361 14.061 1 13.29 ? CBC HEM 201 A 1 
HETATM 29 C C1D HEM . . . B 2 2.052 7.133 15.362 1 11.97 ? C1D HEM 201 A 1 
HETATM 30 C C2D HEM . . . B 2 2.871 8.25 15.854 1 12.96 ? C2D HEM 201 A 1 
HETATM 31 C C3D HEM . . . B 2 2.008 9.216 16.274 1 13.21 ? C3D HEM 201 A 1 
HETATM 32 C C4D HEM . . . B 2 0.668 8.667 16.005 1 11.62 ? C4D HEM 201 A 1 
HETATM 33 C CMD HEM . . . B 2 4.377 8.392 15.885 1 12.32 ? CMD HEM 201 A 1 
HETATM 34 C CAD HEM . . . B 2 2.41 10.55 16.88 1 15.24 ? CAD HEM 201 A 1 
HETATM 35 C CBD HEM . . . B 2 2.506 10.319 18.404 1 17.81 ? CBD HEM 201 A 1 
HETATM 36 C CGD HEM . . . B 2 2.746 11.558 19.261 1 21.88 ? CGD HEM 201 A 1 
HETATM 37 O O1D HEM . . . B 2 1.781 12.182 19.718 1 27.23 ? O1D HEM 201 A 1 
HETATM 38 O O2D HEM . . . B 2 3.885 11.934 19.597 1 23.39 ? O2D HEM 201 A 1 
HETATM 39 N NA HEM . . . B 2 -2.004 7.51 15.684 1 10.1 ? NA HEM 201 A 1 
HETATM 40 N NB HEM . . . B 2 -2.258 4.917 14.498 1 11.17 ? NB HEM 201 A 1 
HETATM 41 N NC HEM . . . B 2 0.651 4.725 14.379 1 10.76 ? NC HEM 201 A 1 
HETATM 42 N ND HEM . . . B 2 0.714 7.381 15.464 1 11.36 ? ND HEM 201 A 1 
HETATM 43 FE FE HEM . . . B 2 -0.704 6.174 14.973 1 10.14 ? FE HEM 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           819 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#