data_5Z82 # _model_server_result.job_id qA3qAM5UKtH92eOmbofkIA _model_server_result.datetime_utc '2024-11-07 12:41:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5Z82 # _exptl.entry_id 5Z82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z82 _cell.length_a 73.98 _cell.length_b 84.04 _cell.length_c 90.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5Z82 _atom_sites.fract_transf_matrix[1][1] 0.013517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 3 HOH A 1 401 34 HOH HOH . C 3 HOH A 2 402 164 HOH HOH . C 3 HOH A 3 403 128 HOH HOH . C 3 HOH A 4 404 135 HOH HOH . C 3 HOH A 5 405 69 HOH HOH . C 3 HOH A 6 406 74 HOH HOH . C 3 HOH A 7 407 94 HOH HOH . C 3 HOH A 8 408 178 HOH HOH . C 3 HOH A 9 409 210 HOH HOH . C 3 HOH A 10 410 62 HOH HOH . C 3 HOH A 11 411 88 HOH HOH . C 3 HOH A 12 412 101 HOH HOH . C 3 HOH A 13 413 50 HOH HOH . C 3 HOH A 14 414 107 HOH HOH . C 3 HOH A 15 415 179 HOH HOH . C 3 HOH A 16 416 183 HOH HOH . C 3 HOH A 17 417 66 HOH HOH . C 3 HOH A 18 418 154 HOH HOH . C 3 HOH A 19 419 68 HOH HOH . C 3 HOH A 20 420 191 HOH HOH . C 3 HOH A 21 421 3 HOH HOH . C 3 HOH A 22 422 46 HOH HOH . C 3 HOH A 23 423 143 HOH HOH . C 3 HOH A 24 424 190 HOH HOH . C 3 HOH A 25 425 2 HOH HOH . C 3 HOH A 26 426 7 HOH HOH . C 3 HOH A 27 427 79 HOH HOH . C 3 HOH A 28 428 44 HOH HOH . C 3 HOH A 29 429 52 HOH HOH . C 3 HOH A 30 430 13 HOH HOH . C 3 HOH A 31 431 6 HOH HOH . C 3 HOH A 32 432 60 HOH HOH . C 3 HOH A 33 433 27 HOH HOH . C 3 HOH A 34 434 1 HOH HOH . C 3 HOH A 35 435 10 HOH HOH . C 3 HOH A 36 436 193 HOH HOH . C 3 HOH A 37 437 105 HOH HOH . C 3 HOH A 38 438 108 HOH HOH . C 3 HOH A 39 439 106 HOH HOH . C 3 HOH A 40 440 17 HOH HOH . C 3 HOH A 41 441 159 HOH HOH . C 3 HOH A 42 442 39 HOH HOH . C 3 HOH A 43 443 36 HOH HOH . C 3 HOH A 44 444 124 HOH HOH . C 3 HOH A 45 445 28 HOH HOH . C 3 HOH A 46 446 176 HOH HOH . C 3 HOH A 47 447 86 HOH HOH . C 3 HOH A 48 448 172 HOH HOH . C 3 HOH A 49 449 32 HOH HOH . C 3 HOH A 50 450 142 HOH HOH . C 3 HOH A 51 451 41 HOH HOH . C 3 HOH A 52 452 31 HOH HOH . C 3 HOH A 53 453 112 HOH HOH . C 3 HOH A 54 454 129 HOH HOH . C 3 HOH A 55 455 85 HOH HOH . C 3 HOH A 56 456 55 HOH HOH . C 3 HOH A 57 457 15 HOH HOH . C 3 HOH A 58 458 8 HOH HOH . C 3 HOH A 59 459 91 HOH HOH . C 3 HOH A 60 460 116 HOH HOH . C 3 HOH A 61 461 16 HOH HOH . C 3 HOH A 62 462 185 HOH HOH . C 3 HOH A 63 463 48 HOH HOH . C 3 HOH A 64 464 127 HOH HOH . C 3 HOH A 65 465 4 HOH HOH . C 3 HOH A 66 466 38 HOH HOH . C 3 HOH A 67 467 146 HOH HOH . C 3 HOH A 68 468 20 HOH HOH . C 3 HOH A 69 469 9 HOH HOH . C 3 HOH A 70 470 140 HOH HOH . C 3 HOH A 71 471 19 HOH HOH . C 3 HOH A 72 472 45 HOH HOH . C 3 HOH A 73 473 75 HOH HOH . C 3 HOH A 74 474 51 HOH HOH . C 3 HOH A 75 475 144 HOH HOH . C 3 HOH A 76 476 139 HOH HOH . C 3 HOH A 77 477 65 HOH HOH . C 3 HOH A 78 478 117 HOH HOH . C 3 HOH A 79 479 89 HOH HOH . C 3 HOH A 80 480 113 HOH HOH . C 3 HOH A 81 481 131 HOH HOH . C 3 HOH A 82 482 18 HOH HOH . C 3 HOH A 83 483 165 HOH HOH . C 3 HOH A 84 484 147 HOH HOH . C 3 HOH A 85 485 49 HOH HOH . C 3 HOH A 86 486 12 HOH HOH . C 3 HOH A 87 487 24 HOH HOH . C 3 HOH A 88 488 23 HOH HOH . C 3 HOH A 89 489 77 HOH HOH . C 3 HOH A 90 490 205 HOH HOH . C 3 HOH A 91 491 87 HOH HOH . C 3 HOH A 92 492 22 HOH HOH . C 3 HOH A 93 493 95 HOH HOH . C 3 HOH A 94 494 61 HOH HOH . C 3 HOH A 95 495 5 HOH HOH . C 3 HOH A 96 496 56 HOH HOH . C 3 HOH A 97 497 59 HOH HOH . C 3 HOH A 98 498 141 HOH HOH . C 3 HOH A 99 499 99 HOH HOH . C 3 HOH A 100 500 188 HOH HOH . C 3 HOH A 101 501 67 HOH HOH . C 3 HOH A 102 502 92 HOH HOH . C 3 HOH A 103 503 97 HOH HOH . C 3 HOH A 104 504 158 HOH HOH . C 3 HOH A 105 505 14 HOH HOH . C 3 HOH A 106 506 21 HOH HOH . C 3 HOH A 107 507 42 HOH HOH . C 3 HOH A 108 508 126 HOH HOH . C 3 HOH A 109 509 25 HOH HOH . C 3 HOH A 110 510 72 HOH HOH . C 3 HOH A 111 511 202 HOH HOH . C 3 HOH A 112 512 133 HOH HOH . C 3 HOH A 113 513 102 HOH HOH . C 3 HOH A 114 514 168 HOH HOH . C 3 HOH A 115 515 182 HOH HOH . C 3 HOH A 116 516 33 HOH HOH . C 3 HOH A 117 517 109 HOH HOH . C 3 HOH A 118 518 90 HOH HOH . C 3 HOH A 119 519 11 HOH HOH . C 3 HOH A 120 520 103 HOH HOH . C 3 HOH A 121 521 114 HOH HOH . C 3 HOH A 122 522 104 HOH HOH . C 3 HOH A 123 523 37 HOH HOH . C 3 HOH A 124 524 29 HOH HOH . C 3 HOH A 125 525 118 HOH HOH . C 3 HOH A 126 526 81 HOH HOH . C 3 HOH A 127 527 173 HOH HOH . C 3 HOH A 128 528 76 HOH HOH . C 3 HOH A 129 529 119 HOH HOH . C 3 HOH A 130 530 150 HOH HOH . C 3 HOH A 131 531 26 HOH HOH . C 3 HOH A 132 532 70 HOH HOH . C 3 HOH A 133 533 213 HOH HOH . C 3 HOH A 134 534 110 HOH HOH . C 3 HOH A 135 535 180 HOH HOH . C 3 HOH A 136 536 63 HOH HOH . C 3 HOH A 137 537 47 HOH HOH . C 3 HOH A 138 538 157 HOH HOH . C 3 HOH A 139 539 181 HOH HOH . C 3 HOH A 140 540 100 HOH HOH . C 3 HOH A 141 541 53 HOH HOH . C 3 HOH A 142 542 219 HOH HOH . C 3 HOH A 143 543 80 HOH HOH . C 3 HOH A 144 544 206 HOH HOH . C 3 HOH A 145 545 123 HOH HOH . C 3 HOH A 146 546 162 HOH HOH . C 3 HOH A 147 547 82 HOH HOH . C 3 HOH A 148 548 40 HOH HOH . C 3 HOH A 149 549 71 HOH HOH . C 3 HOH A 150 550 207 HOH HOH . C 3 HOH A 151 551 171 HOH HOH . C 3 HOH A 152 552 78 HOH HOH . C 3 HOH A 153 553 217 HOH HOH . C 3 HOH A 154 554 93 HOH HOH . C 3 HOH A 155 555 138 HOH HOH . C 3 HOH A 156 556 177 HOH HOH . C 3 HOH A 157 557 43 HOH HOH . C 3 HOH A 158 558 130 HOH HOH . C 3 HOH A 159 559 98 HOH HOH . C 3 HOH A 160 560 58 HOH HOH . C 3 HOH A 161 561 170 HOH HOH . C 3 HOH A 162 562 195 HOH HOH . C 3 HOH A 163 563 174 HOH HOH . C 3 HOH A 164 564 57 HOH HOH . C 3 HOH A 165 565 212 HOH HOH . C 3 HOH A 166 566 197 HOH HOH . C 3 HOH A 167 567 151 HOH HOH . C 3 HOH A 168 568 189 HOH HOH . C 3 HOH A 169 569 216 HOH HOH . C 3 HOH A 170 570 218 HOH HOH . C 3 HOH A 171 571 209 HOH HOH . C 3 HOH A 172 572 204 HOH HOH . C 3 HOH A 173 573 83 HOH HOH . C 3 HOH A 174 574 184 HOH HOH . C 3 HOH A 175 575 134 HOH HOH . C 3 HOH A 176 576 111 HOH HOH . C 3 HOH A 177 577 220 HOH HOH . C 3 HOH A 178 578 203 HOH HOH . C 3 HOH A 179 579 155 HOH HOH . C 3 HOH A 180 580 192 HOH HOH . C 3 HOH A 181 581 145 HOH HOH . C 3 HOH A 182 582 186 HOH HOH . C 3 HOH A 183 583 148 HOH HOH . C 3 HOH A 184 584 35 HOH HOH . C 3 HOH A 185 585 30 HOH HOH . C 3 HOH A 186 586 161 HOH HOH . C 3 HOH A 187 587 54 HOH HOH . C 3 HOH A 188 588 136 HOH HOH . C 3 HOH A 189 589 214 HOH HOH . C 3 HOH A 190 590 132 HOH HOH . C 3 HOH A 191 591 73 HOH HOH . C 3 HOH A 192 592 120 HOH HOH . C 3 HOH A 193 593 115 HOH HOH . C 3 HOH A 194 594 137 HOH HOH . C 3 HOH A 195 595 208 HOH HOH . C 3 HOH A 196 596 169 HOH HOH . C 3 HOH A 197 597 199 HOH HOH . C 3 HOH A 198 598 84 HOH HOH . C 3 HOH A 199 599 196 HOH HOH . C 3 HOH A 200 600 121 HOH HOH . C 3 HOH A 201 601 200 HOH HOH . C 3 HOH A 202 602 64 HOH HOH . C 3 HOH A 203 603 152 HOH HOH . C 3 HOH A 204 604 153 HOH HOH . C 3 HOH A 205 605 163 HOH HOH . C 3 HOH A 206 606 198 HOH HOH . C 3 HOH A 207 607 167 HOH HOH . C 3 HOH A 208 608 201 HOH HOH . C 3 HOH A 209 609 122 HOH HOH . C 3 HOH A 210 610 160 HOH HOH . C 3 HOH A 211 611 149 HOH HOH . C 3 HOH A 212 612 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 14.118 39.803 26.721 1 80.34 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . B 2 13.144 38.892 27.198 1 65.74 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . B 2 14.814 40.503 27.886 1 74.39 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . B 2 14.94 39.59 28.948 1 72.27 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . B 2 16.203 40.988 27.48 1 55.27 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . B 2 16.118 41.891 26.397 1 59.05 ? O3 GOL 301 A 1 HETATM 7 H H11 GOL . . . B 2 14.855 39.269 26.122 1 96.43 ? H11 GOL 301 A 1 HETATM 8 H H12 GOL . . . B 2 13.64 40.546 26.082 1 96.43 ? H12 GOL 301 A 1 HETATM 9 H HO1 GOL . . . B 2 12.662 38.502 26.44 1 78.91 ? HO1 GOL 301 A 1 HETATM 10 H H2 GOL . . . B 2 14.215 41.359 28.196 1 89.29 ? H2 GOL 301 A 1 HETATM 11 H HO2 GOL . . . B 2 15.495 38.833 28.665 1 86.75 ? HO2 GOL 301 A 1 HETATM 12 H H31 GOL . . . B 2 16.68 41.48 28.328 1 66.35 ? H31 GOL 301 A 1 HETATM 13 H H32 GOL . . . B 2 16.819 40.135 27.196 1 66.35 ? H32 GOL 301 A 1 HETATM 14 H HO3 GOL . . . B 2 16.992 41.957 25.958 1 70.88 ? HO3 GOL 301 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #