data_5Z8G # _model_server_result.job_id FWkhHobWvrBjShysWAeE9Q _model_server_result.datetime_utc '2024-10-19 03:58:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5Z8G # _exptl.entry_id 5Z8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.427 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ethyl-6-[(3R)-3-oxidanylpiperidin-1-yl]sulfonyl-benzo[cd]indol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z8G _cell.length_a 32.868 _cell.length_b 47.796 _cell.length_c 79.454 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 N2 O4 S' _chem_comp.formula_weight 360.427 _chem_comp.id 99L _chem_comp.mon_nstd_flag . _chem_comp.name 1-ethyl-6-[(3R)-3-oxidanylpiperidin-1-yl]sulfonyl-benzo[cd]indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C23 99L sing 1 n n C23 C22 99L sing 2 n n C23 C24 99L sing 3 n n C22 C21 99L sing 4 n n C24 N18 99L sing 5 n n C21 C20 99L sing 6 n n N18 C20 99L sing 7 n n N18 S15 99L sing 8 n n O17 S15 99L doub 9 n n C11 C12 99L doub 10 n y C11 C10 99L sing 11 n y C12 C05 99L sing 12 n y S15 O16 99L doub 13 n n S15 C06 99L sing 14 n n C10 C09 99L doub 15 n y C05 C06 99L doub 16 n y C05 C01 99L sing 17 n y C06 C07 99L sing 18 n y C01 C09 99L sing 19 n y C01 C02 99L doub 20 n y C09 C04 99L sing 21 n n C07 C08 99L doub 22 n y C02 C08 99L sing 23 n y C02 N03 99L sing 24 n n C04 O13 99L doub 25 n n C04 N03 99L sing 26 n n N03 C14 99L sing 27 n n C19 C14 99L sing 28 n n C10 H101 99L sing 29 n n C20 H201 99L sing 30 n n C20 H202 99L sing 31 n n C21 H211 99L sing 32 n n C21 H212 99L sing 33 n n C22 H222 99L sing 34 n n C22 H221 99L sing 35 n n C24 H242 99L sing 36 n n C24 H241 99L sing 37 n n C07 H071 99L sing 38 n n C08 H081 99L sing 39 n n C11 H111 99L sing 40 n n C12 H121 99L sing 41 n n C14 H142 99L sing 42 n n C14 H141 99L sing 43 n n C19 H192 99L sing 44 n n C19 H193 99L sing 45 n n C19 H191 99L sing 46 n n C23 H231 99L sing 47 n n O25 H251 99L sing 48 n n # _atom_sites.entry_id 5Z8G _atom_sites.fract_transf_matrix[1][1] 0.030425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 99L A 1 201 1 99L LIG . C 3 DMS A 1 202 1 DMS DMS . D 4 HOH A 1 301 2 HOH HOH . D 4 HOH A 2 302 4 HOH HOH . D 4 HOH A 3 303 1 HOH HOH . D 4 HOH A 4 304 10 HOH HOH . D 4 HOH A 5 305 68 HOH HOH . D 4 HOH A 6 306 27 HOH HOH . D 4 HOH A 7 307 20 HOH HOH . D 4 HOH A 8 308 64 HOH HOH . D 4 HOH A 9 309 25 HOH HOH . D 4 HOH A 10 310 51 HOH HOH . D 4 HOH A 11 311 3 HOH HOH . D 4 HOH A 12 312 69 HOH HOH . D 4 HOH A 13 313 73 HOH HOH . D 4 HOH A 14 314 52 HOH HOH . D 4 HOH A 15 315 33 HOH HOH . D 4 HOH A 16 316 80 HOH HOH . D 4 HOH A 17 317 29 HOH HOH . D 4 HOH A 18 318 70 HOH HOH . D 4 HOH A 19 319 16 HOH HOH . D 4 HOH A 20 320 11 HOH HOH . D 4 HOH A 21 321 28 HOH HOH . D 4 HOH A 22 322 9 HOH HOH . D 4 HOH A 23 323 12 HOH HOH . D 4 HOH A 24 324 50 HOH HOH . D 4 HOH A 25 325 59 HOH HOH . D 4 HOH A 26 326 14 HOH HOH . D 4 HOH A 27 327 53 HOH HOH . D 4 HOH A 28 328 15 HOH HOH . D 4 HOH A 29 329 7 HOH HOH . D 4 HOH A 30 330 5 HOH HOH . D 4 HOH A 31 331 37 HOH HOH . D 4 HOH A 32 332 8 HOH HOH . D 4 HOH A 33 333 54 HOH HOH . D 4 HOH A 34 334 31 HOH HOH . D 4 HOH A 35 335 6 HOH HOH . D 4 HOH A 36 336 42 HOH HOH . D 4 HOH A 37 337 17 HOH HOH . D 4 HOH A 38 338 48 HOH HOH . D 4 HOH A 39 339 65 HOH HOH . D 4 HOH A 40 340 18 HOH HOH . D 4 HOH A 41 341 63 HOH HOH . D 4 HOH A 42 342 79 HOH HOH . D 4 HOH A 43 343 36 HOH HOH . D 4 HOH A 44 344 21 HOH HOH . D 4 HOH A 45 345 30 HOH HOH . D 4 HOH A 46 346 23 HOH HOH . D 4 HOH A 47 347 81 HOH HOH . D 4 HOH A 48 348 19 HOH HOH . D 4 HOH A 49 349 22 HOH HOH . D 4 HOH A 50 350 26 HOH HOH . D 4 HOH A 51 351 61 HOH HOH . D 4 HOH A 52 352 32 HOH HOH . D 4 HOH A 53 353 13 HOH HOH . D 4 HOH A 54 354 34 HOH HOH . D 4 HOH A 55 355 44 HOH HOH . D 4 HOH A 56 356 75 HOH HOH . D 4 HOH A 57 357 57 HOH HOH . D 4 HOH A 58 358 24 HOH HOH . D 4 HOH A 59 359 45 HOH HOH . D 4 HOH A 60 360 49 HOH HOH . D 4 HOH A 61 361 58 HOH HOH . D 4 HOH A 62 362 38 HOH HOH . D 4 HOH A 63 363 41 HOH HOH . D 4 HOH A 64 364 55 HOH HOH . D 4 HOH A 65 365 67 HOH HOH . D 4 HOH A 66 366 72 HOH HOH . D 4 HOH A 67 367 76 HOH HOH . D 4 HOH A 68 368 62 HOH HOH . D 4 HOH A 69 369 46 HOH HOH . D 4 HOH A 70 370 77 HOH HOH . D 4 HOH A 71 371 74 HOH HOH . D 4 HOH A 72 372 43 HOH HOH . D 4 HOH A 73 373 39 HOH HOH . D 4 HOH A 74 374 78 HOH HOH . D 4 HOH A 75 375 47 HOH HOH . D 4 HOH A 76 376 60 HOH HOH . D 4 HOH A 77 377 71 HOH HOH . D 4 HOH A 78 378 66 HOH HOH . D 4 HOH A 79 379 40 HOH HOH . D 4 HOH A 80 380 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 99L . . . B 2 -19.196 -7.429 77.708 1 20.11 ? C10 99L 201 A 1 HETATM 2 C C20 99L . . . B 2 -25.008 -5.983 75.925 1 21.15 ? C20 99L 201 A 1 HETATM 3 C C21 99L . . . B 2 -25.378 -5.225 74.645 1 16 ? C21 99L 201 A 1 HETATM 4 C C22 99L . . . B 2 -24.402 -5.373 73.584 1 18.68 ? C22 99L 201 A 1 HETATM 5 C C24 99L . . . B 2 -23.731 -7.535 74.578 1 20.48 ? C24 99L 201 A 1 HETATM 6 C C01 99L . . . B 2 -21.483 -6.893 78.769 1 19.69 ? C01 99L 201 A 1 HETATM 7 C C02 99L . . . B 2 -22.148 -6.114 79.893 1 16.53 ? C02 99L 201 A 1 HETATM 8 N N03 99L . . . B 2 -21.031 -5.428 80.646 1 21.08 ? N03 99L 201 A 1 HETATM 9 C C04 99L . . . B 2 -19.721 -5.743 79.976 1 14.24 ? C04 99L 201 A 1 HETATM 10 C C05 99L . . . B 2 -22.242 -7.703 77.803 1 19.41 ? C05 99L 201 A 1 HETATM 11 C C06 99L . . . B 2 -23.784 -7.74 78.035 1 20.45 ? C06 99L 201 A 1 HETATM 12 C C07 99L . . . B 2 -24.499 -6.961 79.134 1 16.85 ? C07 99L 201 A 1 HETATM 13 C C08 99L . . . B 2 -23.679 -6.119 80.114 1 21.74 ? C08 99L 201 A 1 HETATM 14 C C09 99L . . . B 2 -20.029 -6.72 78.781 1 19.09 ? C09 99L 201 A 1 HETATM 15 C C11 99L . . . B 2 -19.945 -8.297 76.681 1 22.77 ? C11 99L 201 A 1 HETATM 16 C C12 99L . . . B 2 -21.463 -8.448 76.721 1 18.11 ? C12 99L 201 A 1 HETATM 17 O O13 99L . . . B 2 -18.671 -5.337 80.341 1 24.38 ? O13 99L 201 A 1 HETATM 18 C C14 99L . . . B 2 -21.21 -4.567 81.782 1 17.69 ? C14 99L 201 A 1 HETATM 19 S S15 99L . . . B 2 -24.871 -8.551 76.912 1 20.77 ? S15 99L 201 A 1 HETATM 20 O O16 99L . . . B 2 -26.221 -8.48 77.476 1 22.86 ? O16 99L 201 A 1 HETATM 21 O O17 99L . . . B 2 -24.499 -9.898 76.484 1 24.41 ? O17 99L 201 A 1 HETATM 22 N N18 99L . . . B 2 -24.846 -7.464 75.603 1 18.55 ? N18 99L 201 A 1 HETATM 23 C C19 99L . . . B 2 -21.498 -3.186 81.205 1 19.65 ? C19 99L 201 A 1 HETATM 24 C C23 99L . . . B 2 -24.099 -6.773 73.295 1 21.92 ? C23 99L 201 A 1 HETATM 25 O O25 99L . . . B 2 -22.986 -6.845 72.37 1 24.51 ? O25 99L 201 A 1 HETATM 26 H H101 99L . . . B 2 -18.27 -7.344 77.682 1 24.13 ? H101 99L 201 A 1 HETATM 27 H H201 99L . . . B 2 -25.712 -5.87 76.582 1 25.38 ? H201 99L 201 A 1 HETATM 28 H H202 99L . . . B 2 -24.173 -5.635 76.275 1 25.38 ? H202 99L 201 A 1 HETATM 29 H H211 99L . . . B 2 -26.233 -5.556 74.326 1 19.21 ? H211 99L 201 A 1 HETATM 30 H H212 99L . . . B 2 -25.464 -4.283 74.857 1 19.21 ? H212 99L 201 A 1 HETATM 31 H H222 99L . . . B 2 -24.749 -4.955 72.78 1 22.42 ? H222 99L 201 A 1 HETATM 32 H H221 99L . . . B 2 -23.584 -4.924 73.849 1 22.42 ? H221 99L 201 A 1 HETATM 33 H H242 99L . . . B 2 -22.928 -7.145 74.958 1 24.58 ? H242 99L 201 A 1 HETATM 34 H H241 99L . . . B 2 -23.565 -8.464 74.357 1 24.58 ? H241 99L 201 A 1 HETATM 35 H H071 99L . . . B 2 -25.426 -6.989 79.203 1 20.22 ? H071 99L 201 A 1 HETATM 36 H H081 99L . . . B 2 -24.078 -5.634 80.8 1 26.09 ? H081 99L 201 A 1 HETATM 37 H H111 99L . . . B 2 -19.463 -8.734 76.016 1 27.32 ? H111 99L 201 A 1 HETATM 38 H H121 99L . . . B 2 -21.907 -8.956 76.081 1 21.73 ? H121 99L 201 A 1 HETATM 39 H H142 99L . . . B 2 -20.401 -4.545 82.318 1 21.23 ? H142 99L 201 A 1 HETATM 40 H H141 99L . . . B 2 -21.96 -4.87 82.318 1 21.23 ? H141 99L 201 A 1 HETATM 41 H H192 99L . . . B 2 -20.67 -2.784 80.898 1 23.58 ? H192 99L 201 A 1 HETATM 42 H H193 99L . . . B 2 -21.895 -2.625 81.89 1 23.58 ? H193 99L 201 A 1 HETATM 43 H H191 99L . . . B 2 -22.113 -3.269 80.459 1 23.58 ? H191 99L 201 A 1 HETATM 44 H H231 99L . . . B 2 -24.878 -7.188 72.893 1 26.3 ? H231 99L 201 A 1 HETATM 45 H H251 99L . . . B 2 -22.525 -7.539 72.536 1 29.41 ? H251 99L 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 45 #