data_5Z8G # _model_server_result.job_id xpltdkGg-hSlxdaq8AmXjg _model_server_result.datetime_utc '2024-10-19 03:36:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5Z8G # _exptl.entry_id 5Z8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z8G _cell.length_a 32.868 _cell.length_b 47.796 _cell.length_c 79.454 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 131 n n S C1 DMS sing 132 n n S C2 DMS sing 133 n n C1 H11 DMS sing 134 n n C1 H12 DMS sing 135 n n C1 H13 DMS sing 136 n n C2 H21 DMS sing 137 n n C2 H22 DMS sing 138 n n C2 H23 DMS sing 139 n n # _atom_sites.entry_id 5Z8G _atom_sites.fract_transf_matrix[1][1] 0.030425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 99L A 1 201 1 99L LIG . C 3 DMS A 1 202 1 DMS DMS . D 4 HOH A 1 301 2 HOH HOH . D 4 HOH A 2 302 4 HOH HOH . D 4 HOH A 3 303 1 HOH HOH . D 4 HOH A 4 304 10 HOH HOH . D 4 HOH A 5 305 68 HOH HOH . D 4 HOH A 6 306 27 HOH HOH . D 4 HOH A 7 307 20 HOH HOH . D 4 HOH A 8 308 64 HOH HOH . D 4 HOH A 9 309 25 HOH HOH . D 4 HOH A 10 310 51 HOH HOH . D 4 HOH A 11 311 3 HOH HOH . D 4 HOH A 12 312 69 HOH HOH . D 4 HOH A 13 313 73 HOH HOH . D 4 HOH A 14 314 52 HOH HOH . D 4 HOH A 15 315 33 HOH HOH . D 4 HOH A 16 316 80 HOH HOH . D 4 HOH A 17 317 29 HOH HOH . D 4 HOH A 18 318 70 HOH HOH . D 4 HOH A 19 319 16 HOH HOH . D 4 HOH A 20 320 11 HOH HOH . D 4 HOH A 21 321 28 HOH HOH . D 4 HOH A 22 322 9 HOH HOH . D 4 HOH A 23 323 12 HOH HOH . D 4 HOH A 24 324 50 HOH HOH . D 4 HOH A 25 325 59 HOH HOH . D 4 HOH A 26 326 14 HOH HOH . D 4 HOH A 27 327 53 HOH HOH . D 4 HOH A 28 328 15 HOH HOH . D 4 HOH A 29 329 7 HOH HOH . D 4 HOH A 30 330 5 HOH HOH . D 4 HOH A 31 331 37 HOH HOH . D 4 HOH A 32 332 8 HOH HOH . D 4 HOH A 33 333 54 HOH HOH . D 4 HOH A 34 334 31 HOH HOH . D 4 HOH A 35 335 6 HOH HOH . D 4 HOH A 36 336 42 HOH HOH . D 4 HOH A 37 337 17 HOH HOH . D 4 HOH A 38 338 48 HOH HOH . D 4 HOH A 39 339 65 HOH HOH . D 4 HOH A 40 340 18 HOH HOH . D 4 HOH A 41 341 63 HOH HOH . D 4 HOH A 42 342 79 HOH HOH . D 4 HOH A 43 343 36 HOH HOH . D 4 HOH A 44 344 21 HOH HOH . D 4 HOH A 45 345 30 HOH HOH . D 4 HOH A 46 346 23 HOH HOH . D 4 HOH A 47 347 81 HOH HOH . D 4 HOH A 48 348 19 HOH HOH . D 4 HOH A 49 349 22 HOH HOH . D 4 HOH A 50 350 26 HOH HOH . D 4 HOH A 51 351 61 HOH HOH . D 4 HOH A 52 352 32 HOH HOH . D 4 HOH A 53 353 13 HOH HOH . D 4 HOH A 54 354 34 HOH HOH . D 4 HOH A 55 355 44 HOH HOH . D 4 HOH A 56 356 75 HOH HOH . D 4 HOH A 57 357 57 HOH HOH . D 4 HOH A 58 358 24 HOH HOH . D 4 HOH A 59 359 45 HOH HOH . D 4 HOH A 60 360 49 HOH HOH . D 4 HOH A 61 361 58 HOH HOH . D 4 HOH A 62 362 38 HOH HOH . D 4 HOH A 63 363 41 HOH HOH . D 4 HOH A 64 364 55 HOH HOH . D 4 HOH A 65 365 67 HOH HOH . D 4 HOH A 66 366 72 HOH HOH . D 4 HOH A 67 367 76 HOH HOH . D 4 HOH A 68 368 62 HOH HOH . D 4 HOH A 69 369 46 HOH HOH . D 4 HOH A 70 370 77 HOH HOH . D 4 HOH A 71 371 74 HOH HOH . D 4 HOH A 72 372 43 HOH HOH . D 4 HOH A 73 373 39 HOH HOH . D 4 HOH A 74 374 78 HOH HOH . D 4 HOH A 75 375 47 HOH HOH . D 4 HOH A 76 376 60 HOH HOH . D 4 HOH A 77 377 71 HOH HOH . D 4 HOH A 78 378 66 HOH HOH . D 4 HOH A 79 379 40 HOH HOH . D 4 HOH A 80 380 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -21.367 17.972 97.281 1 51.83 ? S DMS 202 A 1 HETATM 2 O O DMS . . . C 3 -22.017 19.008 98.16 1 62.46 ? O DMS 202 A 1 HETATM 3 C C1 DMS . . . C 3 -19.666 17.665 97.759 1 41.56 ? C1 DMS 202 A 1 HETATM 4 C C2 DMS . . . C 3 -22.175 16.406 97.558 1 32.05 ? C2 DMS 202 A 1 HETATM 5 H H11 DMS . . . C 3 -19.628 17.402 98.784 1 49.87 ? H11 DMS 202 A 1 HETATM 6 H H12 DMS . . . C 3 -19.09 18.539 97.597 1 49.87 ? H12 DMS 202 A 1 HETATM 7 H H13 DMS . . . C 3 -19.273 16.872 97.177 1 49.87 ? H13 DMS 202 A 1 HETATM 8 H H21 DMS . . . C 3 -22.15 16.173 98.591 1 38.46 ? H21 DMS 202 A 1 HETATM 9 H H22 DMS . . . C 3 -21.673 15.648 97.014 1 38.46 ? H22 DMS 202 A 1 HETATM 10 H H23 DMS . . . C 3 -23.181 16.465 97.234 1 38.46 ? H23 DMS 202 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #