data_5Z8L # _model_server_result.job_id ARWY0wYyxXQ-C9u4nikjrw _model_server_result.datetime_utc '2024-11-24 12:41:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5Z8L # _exptl.entry_id 5Z8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z8L _cell.length_a 36.247 _cell.length_b 60.299 _cell.length_c 98.038 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 149 A CYS 149 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc2 A SG CYS 151 A CYS 151 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc3 A SG CYS 164 A CYS 164 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc4 A SG CYS 167 A CYS 167 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc5 A ND1 HIS 172 A HIS 172 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc6 A SG CYS 175 A CYS 175 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc7 A SG CYS 191 A CYS 191 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc8 A SG CYS 194 A CYS 194 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? covale ? covale1 B C ARG 7 P ARG 26 1_555 B N M3L 8 P M3L 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale2 B C M3L 8 P M3L 27 1_555 B N SER 9 P SER 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5Z8L _atom_sites.fract_transf_matrix[1][1] 0.027588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 501 ZN ZN . D 3 ZN A 1 502 502 ZN ZN . E 4 HOH A 1 601 88 HOH HOH . E 4 HOH A 2 602 69 HOH HOH . E 4 HOH A 3 603 30 HOH HOH . E 4 HOH A 4 604 34 HOH HOH . E 4 HOH A 5 605 64 HOH HOH . E 4 HOH A 6 606 77 HOH HOH . E 4 HOH A 7 607 61 HOH HOH . E 4 HOH A 8 608 79 HOH HOH . E 4 HOH A 9 609 63 HOH HOH . E 4 HOH A 10 610 49 HOH HOH . E 4 HOH A 11 611 25 HOH HOH . E 4 HOH A 12 612 43 HOH HOH . E 4 HOH A 13 613 14 HOH HOH . E 4 HOH A 14 614 84 HOH HOH . E 4 HOH A 15 615 100 HOH HOH . E 4 HOH A 16 616 40 HOH HOH . E 4 HOH A 17 617 44 HOH HOH . E 4 HOH A 18 618 82 HOH HOH . E 4 HOH A 19 619 50 HOH HOH . E 4 HOH A 20 620 60 HOH HOH . E 4 HOH A 21 621 6 HOH HOH . E 4 HOH A 22 622 45 HOH HOH . E 4 HOH A 23 623 24 HOH HOH . E 4 HOH A 24 624 10 HOH HOH . E 4 HOH A 25 625 56 HOH HOH . E 4 HOH A 26 626 3 HOH HOH . E 4 HOH A 27 627 46 HOH HOH . E 4 HOH A 28 628 31 HOH HOH . E 4 HOH A 29 629 16 HOH HOH . E 4 HOH A 30 630 1 HOH HOH . E 4 HOH A 31 631 58 HOH HOH . E 4 HOH A 32 632 41 HOH HOH . E 4 HOH A 33 633 51 HOH HOH . E 4 HOH A 34 634 2 HOH HOH . E 4 HOH A 35 635 102 HOH HOH . E 4 HOH A 36 636 5 HOH HOH . E 4 HOH A 37 637 8 HOH HOH . E 4 HOH A 38 638 85 HOH HOH . E 4 HOH A 39 639 4 HOH HOH . E 4 HOH A 40 640 48 HOH HOH . E 4 HOH A 41 641 15 HOH HOH . E 4 HOH A 42 642 35 HOH HOH . E 4 HOH A 43 643 80 HOH HOH . E 4 HOH A 44 644 33 HOH HOH . E 4 HOH A 45 645 27 HOH HOH . E 4 HOH A 46 646 42 HOH HOH . E 4 HOH A 47 647 26 HOH HOH . E 4 HOH A 48 648 76 HOH HOH . E 4 HOH A 49 649 81 HOH HOH . E 4 HOH A 50 650 36 HOH HOH . E 4 HOH A 51 651 107 HOH HOH . E 4 HOH A 52 652 53 HOH HOH . E 4 HOH A 53 653 65 HOH HOH . E 4 HOH A 54 654 7 HOH HOH . E 4 HOH A 55 655 38 HOH HOH . E 4 HOH A 56 656 28 HOH HOH . E 4 HOH A 57 657 19 HOH HOH . E 4 HOH A 58 658 23 HOH HOH . E 4 HOH A 59 659 29 HOH HOH . E 4 HOH A 60 660 21 HOH HOH . E 4 HOH A 61 661 9 HOH HOH . E 4 HOH A 62 662 13 HOH HOH . E 4 HOH A 63 663 12 HOH HOH . E 4 HOH A 64 664 70 HOH HOH . E 4 HOH A 65 665 11 HOH HOH . E 4 HOH A 66 666 22 HOH HOH . E 4 HOH A 67 667 73 HOH HOH . E 4 HOH A 68 668 105 HOH HOH . E 4 HOH A 69 669 99 HOH HOH . E 4 HOH A 70 670 67 HOH HOH . E 4 HOH A 71 671 62 HOH HOH . E 4 HOH A 72 672 55 HOH HOH . E 4 HOH A 73 673 20 HOH HOH . E 4 HOH A 74 674 18 HOH HOH . E 4 HOH A 75 675 68 HOH HOH . E 4 HOH A 76 676 71 HOH HOH . E 4 HOH A 77 677 54 HOH HOH . E 4 HOH A 78 678 86 HOH HOH . E 4 HOH A 79 679 57 HOH HOH . E 4 HOH A 80 680 52 HOH HOH . E 4 HOH A 81 681 47 HOH HOH . E 4 HOH A 82 682 32 HOH HOH . E 4 HOH A 83 683 108 HOH HOH . E 4 HOH A 84 684 83 HOH HOH . E 4 HOH A 85 685 98 HOH HOH . E 4 HOH A 86 686 87 HOH HOH . E 4 HOH A 87 687 97 HOH HOH . E 4 HOH A 88 688 74 HOH HOH . E 4 HOH A 89 689 66 HOH HOH . E 4 HOH A 90 690 89 HOH HOH . E 4 HOH A 91 691 17 HOH HOH . E 4 HOH A 92 692 72 HOH HOH . E 4 HOH A 93 693 90 HOH HOH . E 4 HOH A 94 694 75 HOH HOH . E 4 HOH A 95 695 78 HOH HOH . E 4 HOH A 96 696 92 HOH HOH . E 4 HOH A 97 697 39 HOH HOH . E 4 HOH A 98 698 95 HOH HOH . E 4 HOH A 99 699 104 HOH HOH . E 4 HOH A 100 700 59 HOH HOH . E 4 HOH A 101 701 37 HOH HOH . E 4 HOH A 102 702 96 HOH HOH . E 4 HOH A 103 703 94 HOH HOH . E 4 HOH A 104 704 93 HOH HOH . E 4 HOH A 105 705 103 HOH HOH . E 4 HOH A 106 706 101 HOH HOH . F 4 HOH P 1 101 91 HOH HOH . F 4 HOH P 2 102 106 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 41.636 _atom_site.Cartn_y 28.748 _atom_site.Cartn_z 14.902 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #