data_5Z8R # _model_server_result.job_id dPmrqL1SYNT6mofPqnEeSw _model_server_result.datetime_utc '2024-10-19 03:46:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5Z8R # _exptl.entry_id 5Z8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.427 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ethyl-6-[(3S)-3-oxidanylpiperidin-1-yl]sulfonyl-benzo[cd]indol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z8R _cell.length_a 33.482 _cell.length_b 47.718 _cell.length_c 78.901 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 N2 O4 S' _chem_comp.formula_weight 360.427 _chem_comp.id 99O _chem_comp.mon_nstd_flag . _chem_comp.name 1-ethyl-6-[(3S)-3-oxidanylpiperidin-1-yl]sulfonyl-benzo[cd]indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C23 99O sing 1 n n C23 C22 99O sing 2 n n C23 C24 99O sing 3 n n C22 C21 99O sing 4 n n C21 C20 99O sing 5 n n C24 N18 99O sing 6 n n N18 C20 99O sing 7 n n N18 S15 99O sing 8 n n O17 S15 99O doub 9 n n C11 C12 99O doub 10 n y C11 C10 99O sing 11 n y C12 C05 99O sing 12 n y S15 O16 99O doub 13 n n S15 C06 99O sing 14 n n C10 C09 99O doub 15 n y C05 C06 99O doub 16 n y C05 C01 99O sing 17 n y C06 C07 99O sing 18 n y C01 C09 99O sing 19 n y C01 C02 99O doub 20 n y C09 C04 99O sing 21 n n C07 C08 99O doub 22 n y C02 C08 99O sing 23 n y C02 N03 99O sing 24 n n C04 O13 99O doub 25 n n C04 N03 99O sing 26 n n N03 C14 99O sing 27 n n C19 C14 99O sing 28 n n C10 H101 99O sing 29 n n C20 H201 99O sing 30 n n C20 H202 99O sing 31 n n C21 H211 99O sing 32 n n C21 H212 99O sing 33 n n C22 H221 99O sing 34 n n C22 H222 99O sing 35 n n C24 H241 99O sing 36 n n C24 H242 99O sing 37 n n C07 H071 99O sing 38 n n C08 H081 99O sing 39 n n C11 H111 99O sing 40 n n C12 H121 99O sing 41 n n C14 H142 99O sing 42 n n C14 H141 99O sing 43 n n C19 H193 99O sing 44 n n C19 H191 99O sing 45 n n C19 H192 99O sing 46 n n C23 H231 99O sing 47 n n O25 H251 99O sing 48 n n # _atom_sites.entry_id 5Z8R _atom_sites.fract_transf_matrix[1][1] 0.029867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 99O A 1 201 1 99O LIG . C 3 HOH A 1 301 2 HOH HOH . C 3 HOH A 2 302 46 HOH HOH . C 3 HOH A 3 303 45 HOH HOH . C 3 HOH A 4 304 30 HOH HOH . C 3 HOH A 5 305 1 HOH HOH . C 3 HOH A 6 306 4 HOH HOH . C 3 HOH A 7 307 41 HOH HOH . C 3 HOH A 8 308 11 HOH HOH . C 3 HOH A 9 309 33 HOH HOH . C 3 HOH A 10 310 15 HOH HOH . C 3 HOH A 11 311 48 HOH HOH . C 3 HOH A 12 312 9 HOH HOH . C 3 HOH A 13 313 21 HOH HOH . C 3 HOH A 14 314 47 HOH HOH . C 3 HOH A 15 315 34 HOH HOH . C 3 HOH A 16 316 49 HOH HOH . C 3 HOH A 17 317 16 HOH HOH . C 3 HOH A 18 318 3 HOH HOH . C 3 HOH A 19 319 42 HOH HOH . C 3 HOH A 20 320 7 HOH HOH . C 3 HOH A 21 321 25 HOH HOH . C 3 HOH A 22 322 5 HOH HOH . C 3 HOH A 23 323 13 HOH HOH . C 3 HOH A 24 324 14 HOH HOH . C 3 HOH A 25 325 37 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 6 HOH HOH . C 3 HOH A 28 328 10 HOH HOH . C 3 HOH A 29 329 8 HOH HOH . C 3 HOH A 30 330 36 HOH HOH . C 3 HOH A 31 331 51 HOH HOH . C 3 HOH A 32 332 24 HOH HOH . C 3 HOH A 33 333 18 HOH HOH . C 3 HOH A 34 334 12 HOH HOH . C 3 HOH A 35 335 22 HOH HOH . C 3 HOH A 36 336 19 HOH HOH . C 3 HOH A 37 337 23 HOH HOH . C 3 HOH A 38 338 39 HOH HOH . C 3 HOH A 39 339 35 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 43 HOH HOH . C 3 HOH A 42 342 32 HOH HOH . C 3 HOH A 43 343 29 HOH HOH . C 3 HOH A 44 344 20 HOH HOH . C 3 HOH A 45 345 38 HOH HOH . C 3 HOH A 46 346 17 HOH HOH . C 3 HOH A 47 347 50 HOH HOH . C 3 HOH A 48 348 44 HOH HOH . C 3 HOH A 49 349 27 HOH HOH . C 3 HOH A 50 350 31 HOH HOH . C 3 HOH A 51 351 28 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 99O . . . B 2 -19.104 -7.369 76.853 1 29.78 ? C10 99O 201 A 1 HETATM 2 C C20 99O . . . B 2 -25.476 -5.943 74.986 1 31.56 ? C20 99O 201 A 1 HETATM 3 C C21 99O . . . B 2 -25.751 -5.097 73.726 1 38.42 ? C21 99O 201 A 1 HETATM 4 C C22 99O . . . B 2 -24.622 -4.968 72.818 1 39.27 ? C22 99O 201 A 1 HETATM 5 C C24 99O . . . B 2 -23.633 -7.026 73.885 1 37.89 ? C24 99O 201 A 1 HETATM 6 C C01 99O . . . B 2 -21.369 -6.762 77.914 1 24.9 ? C01 99O 201 A 1 HETATM 7 C C02 99O . . . B 2 -22.005 -5.973 79.036 1 23.45 ? C02 99O 201 A 1 HETATM 8 N N03 99O . . . B 2 -20.892 -5.286 79.817 1 26.47 ? N03 99O 201 A 1 HETATM 9 C C04 99O . . . B 2 -19.58 -5.655 79.145 1 25.63 ? C04 99O 201 A 1 HETATM 10 C C05 99O . . . B 2 -22.14 -7.592 76.935 1 24.29 ? C05 99O 201 A 1 HETATM 11 C C06 99O . . . B 2 -23.697 -7.6 77.131 1 30.32 ? C06 99O 201 A 1 HETATM 12 C C07 99O . . . B 2 -24.379 -6.785 78.255 1 33.95 ? C07 99O 201 A 1 HETATM 13 C C08 99O . . . B 2 -23.54 -5.958 79.237 1 33.15 ? C08 99O 201 A 1 HETATM 14 C C09 99O . . . B 2 -19.911 -6.614 77.942 1 26.32 ? C09 99O 201 A 1 HETATM 15 C C11 99O . . . B 2 -19.852 -8.228 75.81 1 34.67 ? C11 99O 201 A 1 HETATM 16 C C12 99O . . . B 2 -21.38 -8.348 75.833 1 34.33 ? C12 99O 201 A 1 HETATM 17 O O13 99O . . . B 2 -18.502 -5.3 79.486 1 33.3 ? O13 99O 201 A 1 HETATM 18 C C14 99O . . . B 2 -21.133 -4.418 80.951 1 24.64 ? C14 99O 201 A 1 HETATM 19 S S15 99O . . . B 2 -24.81 -8.424 76.022 1 35.96 ? S15 99O 201 A 1 HETATM 20 O O16 99O . . . B 2 -26.118 -8.511 76.672 1 34.26 ? O16 99O 201 A 1 HETATM 21 O O17 99O . . . B 2 -24.431 -9.778 75.61 1 45.58 ? O17 99O 201 A 1 HETATM 22 N N18 99O . . . B 2 -24.886 -7.333 74.705 1 37.97 ? N18 99O 201 A 1 HETATM 23 C C19 99O . . . B 2 -21.58 -3.067 80.362 1 29.82 ? C19 99O 201 A 1 HETATM 24 C C23 99O . . . B 2 -23.914 -6.232 72.589 1 34.44 ? C23 99O 201 A 1 HETATM 25 O O25 99O . . . B 2 -24.745 -7.019 71.719 1 40.7 ? O25 99O 201 A 1 HETATM 26 H H101 99O . . . B 2 -18.177 -7.304 76.829 1 35.74 ? H101 99O 201 A 1 HETATM 27 H H201 99O . . . B 2 -26.311 -6.057 75.466 1 37.87 ? H201 99O 201 A 1 HETATM 28 H H202 99O . . . B 2 -24.855 -5.457 75.55 1 37.87 ? H202 99O 201 A 1 HETATM 29 H H211 99O . . . B 2 -26.487 -5.504 73.241 1 46.11 ? H211 99O 201 A 1 HETATM 30 H H212 99O . . . B 2 -26.018 -4.209 74.009 1 46.11 ? H212 99O 201 A 1 HETATM 31 H H221 99O . . . B 2 -24.946 -4.635 71.966 1 47.12 ? H221 99O 201 A 1 HETATM 32 H H222 99O . . . B 2 -23.997 -4.326 73.191 1 47.12 ? H222 99O 201 A 1 HETATM 33 H H241 99O . . . B 2 -23.023 -6.511 74.436 1 45.47 ? H241 99O 201 A 1 HETATM 34 H H242 99O . . . B 2 -23.209 -7.865 73.646 1 45.47 ? H242 99O 201 A 1 HETATM 35 H H071 99O . . . B 2 -25.306 -6.79 78.331 1 40.74 ? H071 99O 201 A 1 HETATM 36 H H081 99O . . . B 2 -23.937 -5.466 79.919 1 39.78 ? H081 99O 201 A 1 HETATM 37 H H111 99O . . . B 2 -19.367 -8.677 75.155 1 41.6 ? H111 99O 201 A 1 HETATM 38 H H121 99O . . . B 2 -21.832 -8.859 75.201 1 41.19 ? H121 99O 201 A 1 HETATM 39 H H142 99O . . . B 2 -20.319 -4.305 81.465 1 29.56 ? H142 99O 201 A 1 HETATM 40 H H141 99O . . . B 2 -21.834 -4.786 81.511 1 29.56 ? H141 99O 201 A 1 HETATM 41 H H193 99O . . . B 2 -21.124 -2.915 79.519 1 35.78 ? H193 99O 201 A 1 HETATM 42 H H191 99O . . . B 2 -21.36 -2.355 80.982 1 35.78 ? H191 99O 201 A 1 HETATM 43 H H192 99O . . . B 2 -22.538 -3.081 80.212 1 35.78 ? H192 99O 201 A 1 HETATM 44 H H231 99O . . . B 2 -23.072 -6.045 72.146 1 41.32 ? H231 99O 201 A 1 HETATM 45 H H251 99O . . . B 2 -24.315 -7.706 71.463 1 48.83 ? H251 99O 201 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 45 #