data_5Z8Z # _model_server_result.job_id R3fon7ADvSxdKL9RCHJWvw _model_server_result.datetime_utc '2024-11-22 20:47:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5Z8Z # _exptl.entry_id 5Z8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.443 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(3S)-3-azanylpiperidin-1-yl]sulfonyl-1-ethyl-benzo[cd]indol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z8Z _cell.length_a 33.486 _cell.length_b 47.785 _cell.length_c 78.903 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H21 N3 O3 S' _chem_comp.formula_weight 359.443 _chem_comp.id 99R _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(3S)-3-azanylpiperidin-1-yl]sulfonyl-1-ethyl-benzo[cd]indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N25 C23 99R sing 1 n n C22 C23 99R sing 2 n n C22 C21 99R sing 3 n n C23 C24 99R sing 4 n n C21 C20 99R sing 5 n n C24 N18 99R sing 6 n n N18 C20 99R sing 7 n n N18 S15 99R sing 8 n n O17 S15 99R doub 9 n n C11 C12 99R doub 10 n y C11 C10 99R sing 11 n y C12 C05 99R sing 12 n y S15 O16 99R doub 13 n n S15 C06 99R sing 14 n n C10 C09 99R doub 15 n y C05 C06 99R doub 16 n y C05 C01 99R sing 17 n y C06 C07 99R sing 18 n y C09 C01 99R sing 19 n y C09 C04 99R sing 20 n n C01 C02 99R doub 21 n y C07 C08 99R doub 22 n y C02 C08 99R sing 23 n y C02 N03 99R sing 24 n n C04 O13 99R doub 25 n n C04 N03 99R sing 26 n n N03 C14 99R sing 27 n n C19 C14 99R sing 28 n n C10 H101 99R sing 29 n n C20 H202 99R sing 30 n n C20 H201 99R sing 31 n n C21 H211 99R sing 32 n n C21 H212 99R sing 33 n n C22 H222 99R sing 34 n n C22 H221 99R sing 35 n n C24 H241 99R sing 36 n n C24 H242 99R sing 37 n n C07 H071 99R sing 38 n n C08 H081 99R sing 39 n n C11 H111 99R sing 40 n n C12 H121 99R sing 41 n n C14 H141 99R sing 42 n n C14 H142 99R sing 43 n n C19 H192 99R sing 44 n n C19 H191 99R sing 45 n n C19 H193 99R sing 46 n n C23 H231 99R sing 47 n n N25 H251 99R sing 48 n n N25 H252 99R sing 49 n n # _atom_sites.entry_id 5Z8Z _atom_sites.fract_transf_matrix[1][1] 0.029863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 99R A 1 201 1 99R LIG . C 3 HOH A 1 301 69 HOH HOH . C 3 HOH A 2 302 68 HOH HOH . C 3 HOH A 3 303 1 HOH HOH . C 3 HOH A 4 304 58 HOH HOH . C 3 HOH A 5 305 39 HOH HOH . C 3 HOH A 6 306 59 HOH HOH . C 3 HOH A 7 307 35 HOH HOH . C 3 HOH A 8 308 17 HOH HOH . C 3 HOH A 9 309 40 HOH HOH . C 3 HOH A 10 310 30 HOH HOH . C 3 HOH A 11 311 10 HOH HOH . C 3 HOH A 12 312 3 HOH HOH . C 3 HOH A 13 313 18 HOH HOH . C 3 HOH A 14 314 31 HOH HOH . C 3 HOH A 15 315 62 HOH HOH . C 3 HOH A 16 316 11 HOH HOH . C 3 HOH A 17 317 37 HOH HOH . C 3 HOH A 18 318 47 HOH HOH . C 3 HOH A 19 319 14 HOH HOH . C 3 HOH A 20 320 4 HOH HOH . C 3 HOH A 21 321 8 HOH HOH . C 3 HOH A 22 322 28 HOH HOH . C 3 HOH A 23 323 46 HOH HOH . C 3 HOH A 24 324 73 HOH HOH . C 3 HOH A 25 325 6 HOH HOH . C 3 HOH A 26 326 22 HOH HOH . C 3 HOH A 27 327 32 HOH HOH . C 3 HOH A 28 328 36 HOH HOH . C 3 HOH A 29 329 48 HOH HOH . C 3 HOH A 30 330 27 HOH HOH . C 3 HOH A 31 331 12 HOH HOH . C 3 HOH A 32 332 5 HOH HOH . C 3 HOH A 33 333 2 HOH HOH . C 3 HOH A 34 334 26 HOH HOH . C 3 HOH A 35 335 75 HOH HOH . C 3 HOH A 36 336 25 HOH HOH . C 3 HOH A 37 337 19 HOH HOH . C 3 HOH A 38 338 64 HOH HOH . C 3 HOH A 39 339 23 HOH HOH . C 3 HOH A 40 340 24 HOH HOH . C 3 HOH A 41 341 9 HOH HOH . C 3 HOH A 42 342 13 HOH HOH . C 3 HOH A 43 343 21 HOH HOH . C 3 HOH A 44 344 16 HOH HOH . C 3 HOH A 45 345 51 HOH HOH . C 3 HOH A 46 346 33 HOH HOH . C 3 HOH A 47 347 63 HOH HOH . C 3 HOH A 48 348 7 HOH HOH . C 3 HOH A 49 349 15 HOH HOH . C 3 HOH A 50 350 53 HOH HOH . C 3 HOH A 51 351 41 HOH HOH . C 3 HOH A 52 352 61 HOH HOH . C 3 HOH A 53 353 42 HOH HOH . C 3 HOH A 54 354 20 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 71 HOH HOH . C 3 HOH A 57 357 56 HOH HOH . C 3 HOH A 58 358 38 HOH HOH . C 3 HOH A 59 359 54 HOH HOH . C 3 HOH A 60 360 72 HOH HOH . C 3 HOH A 61 361 29 HOH HOH . C 3 HOH A 62 362 65 HOH HOH . C 3 HOH A 63 363 57 HOH HOH . C 3 HOH A 64 364 67 HOH HOH . C 3 HOH A 65 365 50 HOH HOH . C 3 HOH A 66 366 76 HOH HOH . C 3 HOH A 67 367 66 HOH HOH . C 3 HOH A 68 368 60 HOH HOH . C 3 HOH A 69 369 74 HOH HOH . C 3 HOH A 70 370 52 HOH HOH . C 3 HOH A 71 371 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 99R . . . B 2 -19.177 -7.329 76.828 1 22.04 ? C10 99R 201 A 1 HETATM 2 C C20 99R . . . B 2 -25.479 -6.046 75.014 1 30.83 ? C20 99R 201 A 1 HETATM 3 C C21 99R . . . B 2 -25.714 -5.18 73.756 1 38.88 ? C21 99R 201 A 1 HETATM 4 C C22 99R . . . B 2 -25.103 -5.722 72.558 1 49.32 ? C22 99R 201 A 1 HETATM 5 C C24 99R . . . B 2 -23.608 -7.152 73.961 1 39.93 ? C24 99R 201 A 1 HETATM 6 C C01 99R . . . B 2 -21.454 -6.758 77.918 1 16.9 ? C01 99R 201 A 1 HETATM 7 C C02 99R . . . B 2 -22.093 -5.967 79.036 1 15.88 ? C02 99R 201 A 1 HETATM 8 N N03 99R . . . B 2 -20.963 -5.27 79.775 1 20.3 ? N03 99R 201 A 1 HETATM 9 C C04 99R . . . B 2 -19.655 -5.62 79.09 1 16.83 ? C04 99R 201 A 1 HETATM 10 C C05 99R . . . B 2 -22.225 -7.585 76.963 1 21.44 ? C05 99R 201 A 1 HETATM 11 C C06 99R . . . B 2 -23.778 -7.624 77.174 1 23.76 ? C06 99R 201 A 1 HETATM 12 C C07 99R . . . B 2 -24.471 -6.828 78.285 1 25.91 ? C07 99R 201 A 1 HETATM 13 C C08 99R . . . B 2 -23.631 -5.976 79.254 1 24.29 ? C08 99R 201 A 1 HETATM 14 C C09 99R . . . B 2 -19.996 -6.591 77.908 1 19.64 ? C09 99R 201 A 1 HETATM 15 C C11 99R . . . B 2 -19.932 -8.204 75.812 1 32.46 ? C11 99R 201 A 1 HETATM 16 C C12 99R . . . B 2 -21.456 -8.34 75.872 1 28.03 ? C12 99R 201 A 1 HETATM 17 O O13 99R . . . B 2 -18.577 -5.242 79.397 1 27.18 ? O13 99R 201 A 1 HETATM 18 C C14 99R . . . B 2 -21.172 -4.409 80.897 1 19.05 ? C14 99R 201 A 1 HETATM 19 S S15 99R . . . B 2 -24.835 -8.514 76.049 1 28.93 ? S15 99R 201 A 1 HETATM 20 O O16 99R . . . B 2 -26.164 -8.682 76.623 1 36.38 ? O16 99R 201 A 1 HETATM 21 O O17 99R . . . B 2 -24.356 -9.844 75.661 1 36.19 ? O17 99R 201 A 1 HETATM 22 N N18 99R . . . B 2 -24.899 -7.437 74.717 1 35.01 ? N18 99R 201 A 1 HETATM 23 C C19 99R . . . B 2 -21.578 -3.066 80.29 1 16.7 ? C19 99R 201 A 1 HETATM 24 C C23 99R . . . B 2 -23.728 -6.151 72.797 1 48.22 ? C23 99R 201 A 1 HETATM 25 N N25 99R . . . B 2 -23.185 -6.816 71.57 1 46.46 ? N25 99R 201 A 1 HETATM 26 H H101 99R . . . B 2 -18.251 -7.246 76.792 1 26.45 ? H101 99R 201 A 1 HETATM 27 H H202 99R . . . B 2 -26.326 -6.158 75.472 1 37 ? H202 99R 201 A 1 HETATM 28 H H201 99R . . . B 2 -24.865 -5.576 75.6 1 37 ? H201 99R 201 A 1 HETATM 29 H H211 99R . . . B 2 -26.669 -5.103 73.608 1 46.65 ? H211 99R 201 A 1 HETATM 30 H H212 99R . . . B 2 -25.348 -4.296 73.917 1 46.65 ? H212 99R 201 A 1 HETATM 31 H H222 99R . . . B 2 -25.623 -6.484 72.257 1 59.18 ? H222 99R 201 A 1 HETATM 32 H H221 99R . . . B 2 -25.105 -5.04 71.868 1 59.18 ? H221 99R 201 A 1 HETATM 33 H H241 99R . . . B 2 -22.959 -6.804 74.592 1 47.91 ? H241 99R 201 A 1 HETATM 34 H H242 99R . . . B 2 -23.275 -7.99 73.605 1 47.91 ? H242 99R 201 A 1 HETATM 35 H H071 99R . . . B 2 -25.397 -6.855 78.371 1 31.1 ? H071 99R 201 A 1 HETATM 36 H H081 99R . . . B 2 -24.027 -5.487 79.939 1 29.14 ? H081 99R 201 A 1 HETATM 37 H H111 99R . . . B 2 -19.457 -8.652 75.15 1 38.96 ? H111 99R 201 A 1 HETATM 38 H H121 99R . . . B 2 -21.909 -8.861 75.248 1 33.64 ? H121 99R 201 A 1 HETATM 39 H H141 99R . . . B 2 -20.352 -4.315 81.408 1 22.86 ? H141 99R 201 A 1 HETATM 40 H H142 99R . . . B 2 -21.883 -4.754 81.46 1 22.86 ? H142 99R 201 A 1 HETATM 41 H H192 99R . . . B 2 -20.825 -2.687 79.81 1 20.04 ? H192 99R 201 A 1 HETATM 42 H H191 99R . . . B 2 -21.848 -2.46 80.998 1 20.04 ? H191 99R 201 A 1 HETATM 43 H H193 99R . . . B 2 -22.319 -3.198 79.678 1 20.04 ? H193 99R 201 A 1 HETATM 44 H H231 99R . . . B 2 -23.189 -5.371 73 1 57.86 ? H231 99R 201 A 1 HETATM 45 H H251 99R . . . B 2 -23.531 -7.633 71.498 1 55.75 ? H251 99R 201 A 1 HETATM 46 H H252 99R . . . B 2 -22.299 -6.874 71.632 1 55.75 ? H252 99R 201 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #