data_5Z96 # _model_server_result.job_id aFyO9OGzBmEK9PyNkHkE9w _model_server_result.datetime_utc '2024-11-04 22:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":801}' # _entry.id 5Z96 # _exptl.entry_id 5Z96 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z96 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 M N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 549 A CYS 549 1_555 A SG CYS 554 A CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 549 B CYS 549 1_555 B SG CYS 554 B CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 549 C CYS 549 1_555 C SG CYS 554 C CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 549 D CYS 549 1_555 D SG CYS 554 D CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OE2 GLU 417 A GLU 417 1_555 G NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc2 A OE1 GLN 420 A GLN 420 1_555 G NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc3 A OD1 ASN 435 A ASN 435 1_555 G NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc4 A OD2 ASP 438 A ASP 438 1_555 G NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc5 B OE2 GLU 417 B GLU 417 1_555 L NA NA . B NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc6 B OE1 GLN 420 B GLN 420 1_555 L NA NA . B NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc7 B OD1 ASN 435 B ASN 435 1_555 L NA NA . B NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.165 ? metalc ? metalc8 B OD2 ASP 438 B ASP 438 1_555 L NA NA . B NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc9 C OE2 GLU 417 C GLU 417 1_555 N NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc10 C OE1 GLN 420 C GLN 420 1_555 N NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc11 C OD2 ASP 438 C ASP 438 1_555 N NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc12 D OE2 GLU 417 D GLU 417 1_555 Q NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc13 D OE1 GLN 420 D GLN 420 1_555 Q NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc14 D OD1 ASN 435 D ASN 435 1_555 Q NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.164 ? metalc ? metalc15 D OD2 ASP 438 D ASP 438 1_555 Q NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 486 n n CBA CAB Y01 sing 487 n n CBA CAN Y01 sing 488 n n CAN CAJ Y01 sing 489 n n CAJ CAO Y01 sing 490 n n CAO CBB Y01 sing 491 n n CBB CAC Y01 sing 492 n n CBB CBE Y01 sing 493 n n CBE CAP Y01 sing 494 n n CBE CBI Y01 sing 495 n n CAP CAQ Y01 sing 496 n n CAQ CBG Y01 sing 497 n n CBG CBI Y01 sing 498 n n CBG CBD Y01 sing 499 n n CBI CAE Y01 sing 500 n n CBI CAU Y01 sing 501 n n CAU CAS Y01 sing 502 n n CAS CBF Y01 sing 503 n n CBF CBD Y01 sing 504 n n CBF CBH Y01 sing 505 n n CBD CAK Y01 sing 506 n n CAK CAI Y01 sing 507 n n CAI CAZ Y01 doub 508 n n CAZ CAV Y01 sing 509 n n CAZ CBH Y01 sing 510 n n CAV CBC Y01 sing 511 n n CBH CAD Y01 sing 512 n n CBH CAT Y01 sing 513 n n CAT CAR Y01 sing 514 n n CAR CBC Y01 sing 515 n n CBC OAW Y01 sing 516 n n OAW CAY Y01 sing 517 n n CAY OAG Y01 doub 518 n n CAY CAM Y01 sing 519 n n CAM CAL Y01 sing 520 n n CAL CAX Y01 sing 521 n n CAX OAH Y01 sing 522 n n CAX OAF Y01 doub 523 n n CAA HAA1 Y01 sing 524 n n CAA HAA2 Y01 sing 525 n n CAA HAA3 Y01 sing 526 n n CBA HBA Y01 sing 527 n n CAB HAB1 Y01 sing 528 n n CAB HAB2 Y01 sing 529 n n CAB HAB3 Y01 sing 530 n n CAN HAN1 Y01 sing 531 n n CAN HAN2 Y01 sing 532 n n CAJ HAJ1 Y01 sing 533 n n CAJ HAJ2 Y01 sing 534 n n CAO HAO1 Y01 sing 535 n n CAO HAO2 Y01 sing 536 n n CBB HBB Y01 sing 537 n n CAC HAC1 Y01 sing 538 n n CAC HAC2 Y01 sing 539 n n CAC HAC3 Y01 sing 540 n n CBE HBE Y01 sing 541 n n CAP HAP1 Y01 sing 542 n n CAP HAP2 Y01 sing 543 n n CAQ HAQ1 Y01 sing 544 n n CAQ HAQ2 Y01 sing 545 n n CBG HBG Y01 sing 546 n n CBD HBD Y01 sing 547 n n CAE HAE1 Y01 sing 548 n n CAE HAE2 Y01 sing 549 n n CAE HAE3 Y01 sing 550 n n CAU HAU1 Y01 sing 551 n n CAU HAU2 Y01 sing 552 n n CAS HAS1 Y01 sing 553 n n CAS HAS2 Y01 sing 554 n n CBF HBF Y01 sing 555 n n CAK HAK1 Y01 sing 556 n n CAK HAK2 Y01 sing 557 n n CAI HAI Y01 sing 558 n n CAV HAV1 Y01 sing 559 n n CAV HAV2 Y01 sing 560 n n CBC HBC Y01 sing 561 n n CAD HAD1 Y01 sing 562 n n CAD HAD2 Y01 sing 563 n n CAD HAD3 Y01 sing 564 n n CAT HAT1 Y01 sing 565 n n CAT HAT2 Y01 sing 566 n n CAR HAR1 Y01 sing 567 n n CAR HAR2 Y01 sing 568 n n CAM HAM1 Y01 sing 569 n n CAM HAM2 Y01 sing 570 n n CAL HAL1 Y01 sing 571 n n CAL HAL2 Y01 sing 572 n n OAH HAH Y01 sing 573 n n # _atom_sites.entry_id 5Z96 _atom_sites.fract_transf_matrix[1][1] 0.003176 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Y01 A 1 801 4 Y01 Y01 . F 3 LPP A 1 802 1 LPP LPP . G 4 NA A 1 803 1 NA NA . H 4 NA A 1 804 5 NA NA . I 2 Y01 B 1 801 1 Y01 Y01 . J 3 LPP B 1 802 2 LPP LPP . K 3 LPP B 1 803 3 LPP LPP . L 4 NA B 1 804 2 NA NA . M 2 Y01 C 1 801 2 Y01 Y01 . N 4 NA C 1 802 3 NA NA . O 2 Y01 D 1 801 3 Y01 Y01 . P 3 LPP D 1 802 4 LPP LPP . Q 4 NA D 1 803 4 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . O 2 144.335 131.67 181.893 1 56.65 ? CAA Y01 801 D 1 HETATM 2 C CBA Y01 . . . O 2 142.924 131.871 181.338 1 56.65 ? CBA Y01 801 D 1 HETATM 3 C CAB Y01 . . . O 2 142.226 130.516 181.229 1 56.65 ? CAB Y01 801 D 1 HETATM 4 C CAN Y01 . . . O 2 143.003 132.521 179.955 1 56.65 ? CAN Y01 801 D 1 HETATM 5 C CAJ Y01 . . . O 2 141.622 133.034 179.54 1 56.65 ? CAJ Y01 801 D 1 HETATM 6 C CAO Y01 . . . O 2 141.754 133.837 178.242 1 56.65 ? CAO Y01 801 D 1 HETATM 7 C CBB Y01 . . . O 2 140.922 133.19 177.117 1 56.65 ? CBB Y01 801 D 1 HETATM 8 C CAC Y01 . . . O 2 139.455 133.522 177.414 1 56.65 ? CAC Y01 801 D 1 HETATM 9 C CBE Y01 . . . O 2 141.353 133.69 175.702 1 56.65 ? CBE Y01 801 D 1 HETATM 10 C CAP Y01 . . . O 2 142.849 134.113 175.653 1 56.65 ? CAP Y01 801 D 1 HETATM 11 C CAQ Y01 . . . O 2 143.304 133.863 174.209 1 56.65 ? CAQ Y01 801 D 1 HETATM 12 C CBG Y01 . . . O 2 142.006 133.442 173.545 1 56.65 ? CBG Y01 801 D 1 HETATM 13 C CBI Y01 . . . O 2 141.343 132.611 174.611 1 56.65 ? CBI Y01 801 D 1 HETATM 14 C CAE Y01 . . . O 2 142.185 131.385 175.033 1 56.65 ? CAE Y01 801 D 1 HETATM 15 C CAU Y01 . . . O 2 139.963 132.178 174.075 1 56.65 ? CAU Y01 801 D 1 HETATM 16 C CAS Y01 . . . O 2 140.138 131.34 172.791 1 56.65 ? CAS Y01 801 D 1 HETATM 17 C CBF Y01 . . . O 2 140.914 132.122 171.715 1 56.65 ? CBF Y01 801 D 1 HETATM 18 C CBD Y01 . . . O 2 142.241 132.622 172.291 1 56.65 ? CBD Y01 801 D 1 HETATM 19 C CAK Y01 . . . O 2 142.93 133.503 171.27 1 56.65 ? CAK Y01 801 D 1 HETATM 20 C CAI Y01 . . . O 2 142.899 132.97 169.983 1 56.65 ? CAI Y01 801 D 1 HETATM 21 C CAZ Y01 . . . O 2 142.082 131.901 169.617 1 56.65 ? CAZ Y01 801 D 1 HETATM 22 C CAV Y01 . . . O 2 142.087 131.513 168.285 1 56.65 ? CAV Y01 801 D 1 HETATM 23 C CBH Y01 . . . O 2 141.259 131.205 170.539 1 56.65 ? CBH Y01 801 D 1 HETATM 24 C CAD Y01 . . . O 2 142.018 129.974 171.05 1 56.65 ? CAD Y01 801 D 1 HETATM 25 C CAT Y01 . . . O 2 139.963 130.697 169.884 1 56.65 ? CAT Y01 801 D 1 HETATM 26 C CAR Y01 . . . O 2 139.566 131.687 168.803 1 56.65 ? CAR Y01 801 D 1 HETATM 27 C CBC Y01 . . . O 2 140.667 131.678 167.71 1 56.65 ? CBC Y01 801 D 1 HETATM 28 O OAW Y01 . . . O 2 140.446 130.594 166.818 1 56.65 ? OAW Y01 801 D 1 HETATM 29 C CAY Y01 . . . O 2 139.954 131.037 165.634 1 56.65 ? CAY Y01 801 D 1 HETATM 30 O OAG Y01 . . . O 2 140.106 132.175 165.201 1 56.65 ? OAG Y01 801 D 1 HETATM 31 C CAM Y01 . . . O 2 139.203 129.988 164.828 1 56.65 ? CAM Y01 801 D 1 HETATM 32 C CAL Y01 . . . O 2 139.894 129.801 163.484 1 56.65 ? CAL Y01 801 D 1 HETATM 33 C CAX Y01 . . . O 2 139.144 130.6 162.426 1 56.65 ? CAX Y01 801 D 1 HETATM 34 O OAH Y01 . . . O 2 139.169 130.155 161.26 1 56.65 ? OAH Y01 801 D 1 HETATM 35 O OAF Y01 . . . O 2 138.554 131.634 162.805 1 56.65 ? OAF Y01 801 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #