data_5Z96
#
_model_server_result.job_id            bMDoi64mTAcknp6A7TgLCw 
_model_server_result.datetime_utc      '2024-11-29 23:37:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5z96 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":802}' 
#
_entry.id    5Z96 
#
_exptl.entry_id    5Z96 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              648.891 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Z96 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Z96 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
? 3 K N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 549 A CYS 549 1_555 A SG CYS 554 A CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 549 B CYS 549 1_555 B SG CYS 554 B CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 C SG CYS 549 C CYS 549 1_555 C SG CYS 554 C CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 D SG CYS 549 D CYS 549 1_555 D SG CYS 554 D CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 A OE2 GLU 417 A GLU 417 1_555 G NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc2 A OE1 GLN 420 A GLN 420 1_555 G NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
metalc ? metalc3 A OD1 ASN 435 A ASN 435 1_555 G NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? 
metalc ? metalc4 A OD2 ASP 438 A ASP 438 1_555 G NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc5 B OE2 GLU 417 B GLU 417 1_555 L NA NA . B NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc6 B OE1 GLN 420 B GLN 420 1_555 L NA NA . B NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc7 B OD1 ASN 435 B ASN 435 1_555 L NA NA . B NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.165 ? 
metalc ? metalc8 B OD2 ASP 438 B ASP 438 1_555 L NA NA . B NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc9 C OE2 GLU 417 C GLU 417 1_555 N NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc10 C OE1 GLN 420 C GLN 420 1_555 N NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? 
metalc ? metalc11 C OD2 ASP 438 C ASP 438 1_555 N NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? 
metalc ? metalc12 D OE2 GLU 417 D GLU 417 1_555 Q NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc13 D OE1 GLN 420 D GLN 420 1_555 Q NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? 
metalc ? metalc14 D OD1 ASN 435 D ASN 435 1_555 Q NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.164 ? 
metalc ? metalc15 D OD2 ASP 438 D ASP 438 1_555 Q NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? 
#
_chem_comp.formula           'C35 H69 O8 P' 
_chem_comp.formula_weight    648.891 
_chem_comp.id                LPP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE;L-B,G-DIPALMITOYL-A-PHOSPHATIDIC ACID DISODIUM SALT;3-SN-PHOSPHATIDIC ACID;1,2-DIPALMITOYLDISODIUM SALT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O2 LPP sing 192 n n 
P1 O3 LPP doub 193 n n 
P1 O4 LPP sing 194 n n 
P1 O5 LPP sing 195 n n 
O2 HO2 LPP sing 196 n n 
O4 HO4 LPP sing 197 n n 
O5 C6 LPP sing 198 n n 
C6 C7 LPP sing 199 n n 
C6 HC61 LPP sing 200 n n 
C6 HC62 LPP sing 201 n n 
C7 C8 LPP sing 202 n n 
C7 O9 LPP sing 203 n n 
C7 HC7 LPP sing 204 n n 
C8 O27 LPP sing 205 n n 
C8 HC81 LPP sing 206 n n 
C8 HC82 LPP sing 207 n n 
O9 C11 LPP sing 208 n n 
O27 C29 LPP sing 209 n n 
C11 O10 LPP doub 210 n n 
C11 C12 LPP sing 211 n n 
C12 C13 LPP sing 212 n n 
C12 H121 LPP sing 213 n n 
C12 H122 LPP sing 214 n n 
C13 C14 LPP sing 215 n n 
C13 H131 LPP sing 216 n n 
C13 H132 LPP sing 217 n n 
C14 C15 LPP sing 218 n n 
C14 H141 LPP sing 219 n n 
C14 H142 LPP sing 220 n n 
C15 C16 LPP sing 221 n n 
C15 H151 LPP sing 222 n n 
C15 H152 LPP sing 223 n n 
C16 C17 LPP sing 224 n n 
C16 H161 LPP sing 225 n n 
C16 H162 LPP sing 226 n n 
C17 C18 LPP sing 227 n n 
C17 H171 LPP sing 228 n n 
C17 H172 LPP sing 229 n n 
C18 C19 LPP sing 230 n n 
C18 H181 LPP sing 231 n n 
C18 H182 LPP sing 232 n n 
C19 C20 LPP sing 233 n n 
C19 H191 LPP sing 234 n n 
C19 H192 LPP sing 235 n n 
C20 C21 LPP sing 236 n n 
C20 H201 LPP sing 237 n n 
C20 H202 LPP sing 238 n n 
C21 C22 LPP sing 239 n n 
C21 H211 LPP sing 240 n n 
C21 H212 LPP sing 241 n n 
C22 C23 LPP sing 242 n n 
C22 H221 LPP sing 243 n n 
C22 H222 LPP sing 244 n n 
C23 C24 LPP sing 245 n n 
C23 H231 LPP sing 246 n n 
C23 H232 LPP sing 247 n n 
C24 C25 LPP sing 248 n n 
C24 H241 LPP sing 249 n n 
C24 H242 LPP sing 250 n n 
C25 C26 LPP sing 251 n n 
C25 H251 LPP sing 252 n n 
C25 H252 LPP sing 253 n n 
C26 H261 LPP sing 254 n n 
C26 H262 LPP sing 255 n n 
C26 H263 LPP sing 256 n n 
C29 O28 LPP doub 257 n n 
C29 C30 LPP sing 258 n n 
C30 C31 LPP sing 259 n n 
C30 H301 LPP sing 260 n n 
C30 H302 LPP sing 261 n n 
C31 C32 LPP sing 262 n n 
C31 H311 LPP sing 263 n n 
C31 H312 LPP sing 264 n n 
C32 C33 LPP sing 265 n n 
C32 H321 LPP sing 266 n n 
C32 H322 LPP sing 267 n n 
C33 C34 LPP sing 268 n n 
C33 H331 LPP sing 269 n n 
C33 H332 LPP sing 270 n n 
C34 C35 LPP sing 271 n n 
C34 H341 LPP sing 272 n n 
C34 H342 LPP sing 273 n n 
C35 C36 LPP sing 274 n n 
C35 H351 LPP sing 275 n n 
C35 H352 LPP sing 276 n n 
C36 C37 LPP sing 277 n n 
C36 H361 LPP sing 278 n n 
C36 H362 LPP sing 279 n n 
C37 C38 LPP sing 280 n n 
C37 H371 LPP sing 281 n n 
C37 H372 LPP sing 282 n n 
C38 C39 LPP sing 283 n n 
C38 H381 LPP sing 284 n n 
C38 H382 LPP sing 285 n n 
C39 C40 LPP sing 286 n n 
C39 H391 LPP sing 287 n n 
C39 H392 LPP sing 288 n n 
C40 C41 LPP sing 289 n n 
C40 H401 LPP sing 290 n n 
C40 H402 LPP sing 291 n n 
C41 C42 LPP sing 292 n n 
C41 H411 LPP sing 293 n n 
C41 H412 LPP sing 294 n n 
C42 C43 LPP sing 295 n n 
C42 H421 LPP sing 296 n n 
C42 H422 LPP sing 297 n n 
C43 C44 LPP sing 298 n n 
C43 H431 LPP sing 299 n n 
C43 H432 LPP sing 300 n n 
C44 H441 LPP sing 301 n n 
C44 H442 LPP sing 302 n n 
C44 H443 LPP sing 303 n n 
#
_atom_sites.entry_id                     5Z96 
_atom_sites.fract_transf_matrix[1][1]    0.003176 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003176 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003176 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Y01 A 1 801 4 Y01 Y01 . 
F 3 LPP A 1 802 1 LPP LPP . 
G 4 NA A 1 803 1 NA NA . 
H 4 NA A 1 804 5 NA NA . 
I 2 Y01 B 1 801 1 Y01 Y01 . 
J 3 LPP B 1 802 2 LPP LPP . 
K 3 LPP B 1 803 3 LPP LPP . 
L 4 NA B 1 804 2 NA NA . 
M 2 Y01 C 1 801 2 Y01 Y01 . 
N 4 NA C 1 802 3 NA NA . 
O 2 Y01 D 1 801 3 Y01 Y01 . 
P 3 LPP D 1 802 4 LPP LPP . 
Q 4 NA D 1 803 4 NA NA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 LPP . . . J 3 148.97 172.968 190.77 1 20 ? P1 LPP 802 B 1 
HETATM 2 O O2 LPP . . . J 3 147.953 174.045 190.512 1 20 ? O2 LPP 802 B 1 
HETATM 3 O O3 LPP . . . J 3 150.39 173.39 190.492 1 20 ? O3 LPP 802 B 1 
HETATM 4 O O4 LPP . . . J 3 148.788 172.226 192.07 1 20 ? O4 LPP 802 B 1 
HETATM 5 O O5 LPP . . . J 3 148.652 171.868 189.648 1 20 ? O5 LPP 802 B 1 
HETATM 6 C C6 LPP . . . J 3 148.946 172.099 188.279 1 20 ? C6 LPP 802 B 1 
HETATM 7 C C7 LPP . . . J 3 148.51 173.506 187.923 1 20 ? C7 LPP 802 B 1 
HETATM 8 C C8 LPP . . . J 3 149.586 174.138 187.051 1 20 ? C8 LPP 802 B 1 
HETATM 9 O O9 LPP . . . J 3 147.256 173.467 187.245 1 20 ? O9 LPP 802 B 1 
HETATM 10 O O27 LPP . . . J 3 150.033 173.222 186.062 1 20 ? O27 LPP 802 B 1 
HETATM 11 C C11 LPP . . . J 3 146.131 173.225 188.136 1 20 ? C11 LPP 802 B 1 
HETATM 12 O O10 LPP . . . J 3 145.885 174.022 189.019 1 20 ? O10 LPP 802 B 1 
HETATM 13 C C12 LPP . . . J 3 145.265 172.001 187.967 1 20 ? C12 LPP 802 B 1 
HETATM 14 C C13 LPP . . . J 3 144.345 172.171 186.769 1 20 ? C13 LPP 802 B 1 
HETATM 15 C C14 LPP . . . J 3 145.155 172.367 185.499 1 20 ? C14 LPP 802 B 1 
HETATM 16 C C15 LPP . . . J 3 145.115 171.134 184.61 1 20 ? C15 LPP 802 B 1 
HETATM 17 C C16 LPP . . . J 3 146.192 171.226 183.537 1 20 ? C16 LPP 802 B 1 
HETATM 18 C C17 LPP . . . J 3 145.624 170.946 182.153 1 20 ? C17 LPP 802 B 1 
HETATM 19 C C18 LPP . . . J 3 146.687 171.133 181.078 1 20 ? C18 LPP 802 B 1 
HETATM 20 C C19 LPP . . . J 3 147.03 169.807 180.414 1 20 ? C19 LPP 802 B 1 
HETATM 21 C C20 LPP . . . J 3 148.505 169.481 180.59 1 20 ? C20 LPP 802 B 1 
HETATM 22 C C21 LPP . . . J 3 148.715 167.984 180.754 1 20 ? C21 LPP 802 B 1 
HETATM 23 C C22 LPP . . . J 3 148.76 167.303 179.394 1 20 ? C22 LPP 802 B 1 
HETATM 24 C C23 LPP . . . J 3 149.02 165.812 179.547 1 20 ? C23 LPP 802 B 1 
HETATM 25 C C24 LPP . . . J 3 149.182 165.142 178.189 1 20 ? C24 LPP 802 B 1 
HETATM 26 C C25 LPP . . . J 3 148.684 163.704 178.224 1 20 ? C25 LPP 802 B 1 
HETATM 27 C C26 LPP . . . J 3 147.266 163.628 177.708 1 20 ? C26 LPP 802 B 1 
HETATM 28 C C29 LPP . . . J 3 149.532 173.369 184.714 1 20 ? C29 LPP 802 B 1 
HETATM 29 O O28 LPP . . . J 3 148.336 173.49 184.548 1 20 ? O28 LPP 802 B 1 
HETATM 30 C C30 LPP . . . J 3 150.462 173.379 183.534 1 20 ? C30 LPP 802 B 1 
HETATM 31 C C31 LPP . . . J 3 149.85 174.229 182.433 1 20 ? C31 LPP 802 B 1 
HETATM 32 C C32 LPP . . . J 3 149.898 173.497 181.103 1 20 ? C32 LPP 802 B 1 
HETATM 33 C C33 LPP . . . J 3 151.3 173.556 180.52 1 20 ? C33 LPP 802 B 1 
HETATM 34 C C34 LPP . . . J 3 151.508 174.842 179.736 1 20 ? C34 LPP 802 B 1 
HETATM 35 C C35 LPP . . . J 3 151.376 174.591 178.24 1 20 ? C35 LPP 802 B 1 
HETATM 36 C C36 LPP . . . J 3 152.744 174.435 177.593 1 20 ? C36 LPP 802 B 1 
HETATM 37 C C37 LPP . . . J 3 152.898 175.383 176.412 1 20 ? C37 LPP 802 B 1 
HETATM 38 C C38 LPP . . . J 3 153.69 174.735 175.286 1 20 ? C38 LPP 802 B 1 
HETATM 39 C C39 LPP . . . J 3 155.157 174.575 175.661 1 20 ? C39 LPP 802 B 1 
HETATM 40 C C40 LPP . . . J 3 156.06 175.33 174.691 1 20 ? C40 LPP 802 B 1 
HETATM 41 C C41 LPP . . . J 3 157.421 174.654 174.558 1 20 ? C41 LPP 802 B 1 
HETATM 42 C C42 LPP . . . J 3 158.447 175.275 175.499 1 20 ? C42 LPP 802 B 1 
HETATM 43 C C43 LPP . . . J 3 158.523 176.787 175.319 1 20 ? C43 LPP 802 B 1 
HETATM 44 C C44 LPP . . . J 3 157.38 177.481 176.027 1 20 ? C44 LPP 802 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#