data_5Z9B # _model_server_result.job_id MhVvwNFuLjI1fu2EosM6bg _model_server_result.datetime_utc '2024-11-22 11:07:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 5Z9B # _exptl.entry_id 5Z9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.151 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z9B _cell.length_a 61.782 _cell.length_b 68.231 _cell.length_c 102.529 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H7 N3' _chem_comp.formula_weight 133.151 _chem_comp.id AX7 _chem_comp.mon_nstd_flag . _chem_comp.name 1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAF CAI AX7 sing 70 n y NAF CAH AX7 sing 71 n y CAI CAD AX7 doub 72 n y CAI CAJ AX7 sing 73 n y CAD CAB AX7 sing 74 n y CAB CAC AX7 doub 75 n y CAC CAE AX7 sing 76 n y CAE CAJ AX7 doub 77 n y CAJ NAG AX7 sing 78 n y NAG CAH AX7 doub 79 n y CAH NAA AX7 sing 80 n n NAF HNAF AX7 sing 81 n n CAD HAD AX7 sing 82 n n CAB HAB AX7 sing 83 n n CAC HAC AX7 sing 84 n n CAE HAE AX7 sing 85 n n NAA HNAA AX7 sing 86 n n NAA HNAB AX7 sing 87 n n # _atom_sites.entry_id 5Z9B _atom_sites.fract_transf_matrix[1][1] 0.016186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 1 PO4 PO4 . D 2 PO4 A 1 302 2 PO4 PO4 . E 3 HX3 A 1 303 1 HX3 HX3 . F 4 AX7 A 1 304 1 AX7 AX7 . G 2 PO4 B 1 301 3 PO4 PO4 . H 2 PO4 B 1 302 4 PO4 PO4 . I 3 HX3 B 1 303 2 HX3 HX3 . J 5 HOH A 1 401 58 HOH HOH . J 5 HOH A 2 402 82 HOH HOH . J 5 HOH A 3 403 111 HOH HOH . J 5 HOH A 4 404 63 HOH HOH . J 5 HOH A 5 405 98 HOH HOH . J 5 HOH A 6 406 120 HOH HOH . J 5 HOH A 7 407 76 HOH HOH . J 5 HOH A 8 408 50 HOH HOH . J 5 HOH A 9 409 81 HOH HOH . J 5 HOH A 10 410 123 HOH HOH . J 5 HOH A 11 411 84 HOH HOH . J 5 HOH A 12 412 78 HOH HOH . J 5 HOH A 13 413 19 HOH HOH . J 5 HOH A 14 414 94 HOH HOH . J 5 HOH A 15 415 128 HOH HOH . J 5 HOH A 16 416 5 HOH HOH . J 5 HOH A 17 417 12 HOH HOH . J 5 HOH A 18 418 90 HOH HOH . J 5 HOH A 19 419 3 HOH HOH . J 5 HOH A 20 420 79 HOH HOH . J 5 HOH A 21 421 133 HOH HOH . J 5 HOH A 22 422 74 HOH HOH . J 5 HOH A 23 423 124 HOH HOH . J 5 HOH A 24 424 97 HOH HOH . J 5 HOH A 25 425 75 HOH HOH . J 5 HOH A 26 426 132 HOH HOH . J 5 HOH A 27 427 37 HOH HOH . J 5 HOH A 28 428 110 HOH HOH . J 5 HOH A 29 429 2 HOH HOH . J 5 HOH A 30 430 127 HOH HOH . J 5 HOH A 31 431 21 HOH HOH . J 5 HOH A 32 432 44 HOH HOH . J 5 HOH A 33 433 95 HOH HOH . J 5 HOH A 34 434 122 HOH HOH . J 5 HOH A 35 435 91 HOH HOH . J 5 HOH A 36 436 92 HOH HOH . J 5 HOH A 37 437 26 HOH HOH . J 5 HOH A 38 438 93 HOH HOH . J 5 HOH A 39 439 18 HOH HOH . J 5 HOH A 40 440 10 HOH HOH . J 5 HOH A 41 441 114 HOH HOH . J 5 HOH A 42 442 15 HOH HOH . J 5 HOH A 43 443 80 HOH HOH . J 5 HOH A 44 444 54 HOH HOH . J 5 HOH A 45 445 115 HOH HOH . J 5 HOH A 46 446 32 HOH HOH . J 5 HOH A 47 447 68 HOH HOH . J 5 HOH A 48 448 121 HOH HOH . J 5 HOH A 49 449 65 HOH HOH . J 5 HOH A 50 450 62 HOH HOH . J 5 HOH A 51 451 67 HOH HOH . J 5 HOH A 52 452 131 HOH HOH . J 5 HOH A 53 453 125 HOH HOH . J 5 HOH A 54 454 33 HOH HOH . J 5 HOH A 55 455 116 HOH HOH . J 5 HOH A 56 456 77 HOH HOH . J 5 HOH A 57 458 73 HOH HOH . J 5 HOH A 58 459 119 HOH HOH . J 5 HOH A 59 460 129 HOH HOH . J 5 HOH A 60 461 14 HOH HOH . J 5 HOH A 61 462 152 HOH HOH . J 5 HOH A 62 463 89 HOH HOH . J 5 HOH A 63 464 85 HOH HOH . J 5 HOH A 64 465 130 HOH HOH . K 5 HOH B 1 401 31 HOH HOH . K 5 HOH B 2 402 70 HOH HOH . K 5 HOH B 3 403 49 HOH HOH . K 5 HOH B 4 404 118 HOH HOH . K 5 HOH B 5 405 38 HOH HOH . K 5 HOH B 6 406 59 HOH HOH . K 5 HOH B 7 407 20 HOH HOH . K 5 HOH B 8 408 87 HOH HOH . K 5 HOH B 9 409 101 HOH HOH . K 5 HOH B 10 410 11 HOH HOH . K 5 HOH B 11 411 8 HOH HOH . K 5 HOH B 12 412 134 HOH HOH . K 5 HOH B 13 413 24 HOH HOH . K 5 HOH B 14 414 102 HOH HOH . K 5 HOH B 15 415 7 HOH HOH . K 5 HOH B 16 416 6 HOH HOH . K 5 HOH B 17 417 56 HOH HOH . K 5 HOH B 18 418 106 HOH HOH . K 5 HOH B 19 419 105 HOH HOH . K 5 HOH B 20 420 53 HOH HOH . K 5 HOH B 21 421 39 HOH HOH . K 5 HOH B 22 422 139 HOH HOH . K 5 HOH B 23 423 23 HOH HOH . K 5 HOH B 24 424 99 HOH HOH . K 5 HOH B 25 425 13 HOH HOH . K 5 HOH B 26 426 43 HOH HOH . K 5 HOH B 27 427 147 HOH HOH . K 5 HOH B 28 428 100 HOH HOH . K 5 HOH B 29 429 1 HOH HOH . K 5 HOH B 30 430 16 HOH HOH . K 5 HOH B 31 431 151 HOH HOH . K 5 HOH B 32 432 142 HOH HOH . K 5 HOH B 33 433 109 HOH HOH . K 5 HOH B 34 434 30 HOH HOH . K 5 HOH B 35 435 149 HOH HOH . K 5 HOH B 36 436 113 HOH HOH . K 5 HOH B 37 437 64 HOH HOH . K 5 HOH B 38 438 40 HOH HOH . K 5 HOH B 39 439 29 HOH HOH . K 5 HOH B 40 440 25 HOH HOH . K 5 HOH B 41 441 36 HOH HOH . K 5 HOH B 42 442 135 HOH HOH . K 5 HOH B 43 443 140 HOH HOH . K 5 HOH B 44 444 27 HOH HOH . K 5 HOH B 45 445 55 HOH HOH . K 5 HOH B 46 446 143 HOH HOH . K 5 HOH B 47 447 86 HOH HOH . K 5 HOH B 48 448 60 HOH HOH . K 5 HOH B 49 449 4 HOH HOH . K 5 HOH B 50 450 104 HOH HOH . K 5 HOH B 51 451 42 HOH HOH . K 5 HOH B 52 452 35 HOH HOH . K 5 HOH B 53 453 61 HOH HOH . K 5 HOH B 54 454 52 HOH HOH . K 5 HOH B 55 455 141 HOH HOH . K 5 HOH B 56 456 17 HOH HOH . K 5 HOH B 57 457 150 HOH HOH . K 5 HOH B 58 458 45 HOH HOH . K 5 HOH B 59 459 137 HOH HOH . K 5 HOH B 60 460 145 HOH HOH . K 5 HOH B 61 461 34 HOH HOH . K 5 HOH B 62 462 103 HOH HOH . K 5 HOH B 63 463 83 HOH HOH . K 5 HOH B 64 465 22 HOH HOH . K 5 HOH B 65 466 148 HOH HOH . K 5 HOH B 66 467 47 HOH HOH . K 5 HOH B 67 468 72 HOH HOH . K 5 HOH B 68 469 48 HOH HOH . K 5 HOH B 69 470 112 HOH HOH . K 5 HOH B 70 471 41 HOH HOH . K 5 HOH B 71 472 144 HOH HOH . K 5 HOH B 72 473 66 HOH HOH . K 5 HOH B 73 474 153 HOH HOH . K 5 HOH B 74 475 136 HOH HOH . K 5 HOH B 75 476 69 HOH HOH . K 5 HOH B 76 477 146 HOH HOH . K 5 HOH B 77 478 46 HOH HOH . K 5 HOH B 78 479 138 HOH HOH . K 5 HOH B 79 480 108 HOH HOH . K 5 HOH B 80 481 117 HOH HOH . K 5 HOH B 81 482 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAF AX7 . . . F 4 -18.037 0.153 -12.454 1 18.98 ? NAF AX7 304 A 1 HETATM 2 C CAI AX7 . . . F 4 -16.951 0.929 -12.865 1 18.43 ? CAI AX7 304 A 1 HETATM 3 C CAD AX7 . . . F 4 -16.287 1.965 -12.212 1 18.78 ? CAD AX7 304 A 1 HETATM 4 C CAB AX7 . . . F 4 -15.243 2.611 -12.862 1 19.35 ? CAB AX7 304 A 1 HETATM 5 C CAC AX7 . . . F 4 -14.862 2.235 -14.145 1 19.34 ? CAC AX7 304 A 1 HETATM 6 C CAE AX7 . . . F 4 -15.511 1.199 -14.804 1 18.75 ? CAE AX7 304 A 1 HETATM 7 C CAJ AX7 . . . F 4 -16.55 0.555 -14.148 1 19.04 ? CAJ AX7 304 A 1 HETATM 8 N NAG AX7 . . . F 4 -17.392 -0.474 -14.523 1 19.54 ? NAG AX7 304 A 1 HETATM 9 C CAH AX7 . . . F 4 -18.266 -0.67 -13.487 1 19.86 ? CAH AX7 304 A 1 HETATM 10 N NAA AX7 . . . F 4 -19.248 -1.568 -13.545 1 21.14 ? NAA AX7 304 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #