data_5Z9F # _model_server_result.job_id agF6GuXQE1ncJ7lj42R0vw _model_server_result.datetime_utc '2024-11-22 17:05:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z9f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 5Z9F # _exptl.entry_id 5Z9F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.151 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z9F _cell.length_a 61.587 _cell.length_b 68.097 _cell.length_c 102.124 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z9F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H7 N3' _chem_comp.formula_weight 133.151 _chem_comp.id AX7 _chem_comp.mon_nstd_flag . _chem_comp.name 1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAF CAI AX7 sing 84 n y NAF CAH AX7 sing 85 n y CAI CAD AX7 doub 86 n y CAI CAJ AX7 sing 87 n y CAD CAB AX7 sing 88 n y CAB CAC AX7 doub 89 n y CAC CAE AX7 sing 90 n y CAE CAJ AX7 doub 91 n y CAJ NAG AX7 sing 92 n y NAG CAH AX7 doub 93 n y CAH NAA AX7 sing 94 n n NAF HNAF AX7 sing 95 n n CAD HAD AX7 sing 96 n n CAB HAB AX7 sing 97 n n CAC HAC AX7 sing 98 n n CAE HAE AX7 sing 99 n n NAA HNAA AX7 sing 100 n n NAA HNAB AX7 sing 101 n n # _atom_sites.entry_id 5Z9F _atom_sites.fract_transf_matrix[1][1] 0.016237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 1 PO4 PO4 . D 2 PO4 A 1 302 2 PO4 PO4 . E 3 0R0 A 1 303 1 0R0 0R0 . F 4 AX7 A 1 304 1 AX7 AX7 . G 2 PO4 B 1 301 3 PO4 PO4 . H 2 PO4 B 1 302 4 PO4 PO4 . I 3 0R0 B 1 303 2 0R0 0R0 . J 5 HOH A 1 401 51 HOH HOH . J 5 HOH A 2 402 11 HOH HOH . J 5 HOH A 3 403 2 HOH HOH . J 5 HOH A 4 404 53 HOH HOH . J 5 HOH A 5 405 88 HOH HOH . J 5 HOH A 6 406 12 HOH HOH . J 5 HOH A 7 407 129 HOH HOH . J 5 HOH A 8 408 153 HOH HOH . J 5 HOH A 9 409 27 HOH HOH . J 5 HOH A 10 410 69 HOH HOH . J 5 HOH A 11 411 23 HOH HOH . J 5 HOH A 12 412 97 HOH HOH . J 5 HOH A 13 413 90 HOH HOH . J 5 HOH A 14 414 37 HOH HOH . J 5 HOH A 15 415 163 HOH HOH . J 5 HOH A 16 416 14 HOH HOH . J 5 HOH A 17 417 74 HOH HOH . J 5 HOH A 18 418 36 HOH HOH . J 5 HOH A 19 419 93 HOH HOH . J 5 HOH A 20 420 119 HOH HOH . J 5 HOH A 21 421 6 HOH HOH . J 5 HOH A 22 422 96 HOH HOH . J 5 HOH A 23 423 75 HOH HOH . J 5 HOH A 24 424 140 HOH HOH . J 5 HOH A 25 425 154 HOH HOH . J 5 HOH A 26 426 20 HOH HOH . J 5 HOH A 27 427 105 HOH HOH . J 5 HOH A 28 428 141 HOH HOH . J 5 HOH A 29 429 130 HOH HOH . J 5 HOH A 30 430 139 HOH HOH . J 5 HOH A 31 431 48 HOH HOH . J 5 HOH A 32 432 137 HOH HOH . J 5 HOH A 33 433 104 HOH HOH . J 5 HOH A 34 434 173 HOH HOH . J 5 HOH A 35 435 147 HOH HOH . J 5 HOH A 36 436 22 HOH HOH . J 5 HOH A 37 437 175 HOH HOH . J 5 HOH A 38 438 152 HOH HOH . J 5 HOH A 39 439 28 HOH HOH . J 5 HOH A 40 440 85 HOH HOH . J 5 HOH A 41 441 15 HOH HOH . J 5 HOH A 42 442 32 HOH HOH . J 5 HOH A 43 443 94 HOH HOH . J 5 HOH A 44 444 162 HOH HOH . J 5 HOH A 45 445 4 HOH HOH . J 5 HOH A 46 446 149 HOH HOH . J 5 HOH A 47 447 145 HOH HOH . J 5 HOH A 48 448 44 HOH HOH . J 5 HOH A 49 449 179 HOH HOH . J 5 HOH A 50 450 125 HOH HOH . J 5 HOH A 51 451 21 HOH HOH . J 5 HOH A 52 452 56 HOH HOH . J 5 HOH A 53 453 100 HOH HOH . J 5 HOH A 54 454 148 HOH HOH . J 5 HOH A 55 455 73 HOH HOH . J 5 HOH A 56 456 156 HOH HOH . J 5 HOH A 57 457 52 HOH HOH . J 5 HOH A 58 458 81 HOH HOH . J 5 HOH A 59 459 29 HOH HOH . J 5 HOH A 60 460 122 HOH HOH . J 5 HOH A 61 461 174 HOH HOH . J 5 HOH A 62 462 116 HOH HOH . J 5 HOH A 63 463 176 HOH HOH . J 5 HOH A 64 464 150 HOH HOH . J 5 HOH A 65 465 126 HOH HOH . J 5 HOH A 66 466 68 HOH HOH . J 5 HOH A 67 467 157 HOH HOH . J 5 HOH A 68 468 144 HOH HOH . J 5 HOH A 69 469 164 HOH HOH . J 5 HOH A 70 470 183 HOH HOH . J 5 HOH A 71 471 110 HOH HOH . J 5 HOH A 72 472 180 HOH HOH . J 5 HOH A 73 473 159 HOH HOH . J 5 HOH A 74 474 39 HOH HOH . J 5 HOH A 75 475 160 HOH HOH . K 5 HOH B 1 401 13 HOH HOH . K 5 HOH B 2 402 34 HOH HOH . K 5 HOH B 3 403 54 HOH HOH . K 5 HOH B 4 404 151 HOH HOH . K 5 HOH B 5 405 134 HOH HOH . K 5 HOH B 6 406 66 HOH HOH . K 5 HOH B 7 407 84 HOH HOH . K 5 HOH B 8 408 8 HOH HOH . K 5 HOH B 9 409 3 HOH HOH . K 5 HOH B 10 410 177 HOH HOH . K 5 HOH B 11 411 16 HOH HOH . K 5 HOH B 12 412 60 HOH HOH . K 5 HOH B 13 413 19 HOH HOH . K 5 HOH B 14 414 49 HOH HOH . K 5 HOH B 15 415 178 HOH HOH . K 5 HOH B 16 416 87 HOH HOH . K 5 HOH B 17 417 9 HOH HOH . K 5 HOH B 18 418 7 HOH HOH . K 5 HOH B 19 419 133 HOH HOH . K 5 HOH B 20 420 33 HOH HOH . K 5 HOH B 21 421 128 HOH HOH . K 5 HOH B 22 422 86 HOH HOH . K 5 HOH B 23 423 132 HOH HOH . K 5 HOH B 24 424 47 HOH HOH . K 5 HOH B 25 425 24 HOH HOH . K 5 HOH B 26 426 72 HOH HOH . K 5 HOH B 27 427 42 HOH HOH . K 5 HOH B 28 428 91 HOH HOH . K 5 HOH B 29 429 83 HOH HOH . K 5 HOH B 30 430 106 HOH HOH . K 5 HOH B 31 431 59 HOH HOH . K 5 HOH B 32 432 70 HOH HOH . K 5 HOH B 33 433 127 HOH HOH . K 5 HOH B 34 434 31 HOH HOH . K 5 HOH B 35 435 17 HOH HOH . K 5 HOH B 36 436 67 HOH HOH . K 5 HOH B 37 437 103 HOH HOH . K 5 HOH B 38 438 5 HOH HOH . K 5 HOH B 39 439 185 HOH HOH . K 5 HOH B 40 440 43 HOH HOH . K 5 HOH B 41 441 38 HOH HOH . K 5 HOH B 42 442 64 HOH HOH . K 5 HOH B 43 443 55 HOH HOH . K 5 HOH B 44 444 10 HOH HOH . K 5 HOH B 45 445 182 HOH HOH . K 5 HOH B 46 446 121 HOH HOH . K 5 HOH B 47 447 77 HOH HOH . K 5 HOH B 48 448 57 HOH HOH . K 5 HOH B 49 449 117 HOH HOH . K 5 HOH B 50 450 76 HOH HOH . K 5 HOH B 51 451 169 HOH HOH . K 5 HOH B 52 452 184 HOH HOH . K 5 HOH B 53 453 108 HOH HOH . K 5 HOH B 54 454 99 HOH HOH . K 5 HOH B 55 455 82 HOH HOH . K 5 HOH B 56 456 35 HOH HOH . K 5 HOH B 57 457 79 HOH HOH . K 5 HOH B 58 458 41 HOH HOH . K 5 HOH B 59 459 98 HOH HOH . K 5 HOH B 60 460 25 HOH HOH . K 5 HOH B 61 461 138 HOH HOH . K 5 HOH B 62 462 26 HOH HOH . K 5 HOH B 63 463 146 HOH HOH . K 5 HOH B 64 464 89 HOH HOH . K 5 HOH B 65 465 50 HOH HOH . K 5 HOH B 66 466 58 HOH HOH . K 5 HOH B 67 467 62 HOH HOH . K 5 HOH B 68 468 30 HOH HOH . K 5 HOH B 69 469 135 HOH HOH . K 5 HOH B 70 470 107 HOH HOH . K 5 HOH B 71 471 92 HOH HOH . K 5 HOH B 72 472 131 HOH HOH . K 5 HOH B 73 473 63 HOH HOH . K 5 HOH B 74 474 46 HOH HOH . K 5 HOH B 75 475 123 HOH HOH . K 5 HOH B 76 476 167 HOH HOH . K 5 HOH B 77 477 95 HOH HOH . K 5 HOH B 78 478 80 HOH HOH . K 5 HOH B 79 479 65 HOH HOH . K 5 HOH B 80 480 181 HOH HOH . K 5 HOH B 81 481 45 HOH HOH . K 5 HOH B 82 482 120 HOH HOH . K 5 HOH B 83 483 113 HOH HOH . K 5 HOH B 84 484 109 HOH HOH . K 5 HOH B 85 485 158 HOH HOH . K 5 HOH B 86 486 18 HOH HOH . K 5 HOH B 87 487 1 HOH HOH . K 5 HOH B 88 488 124 HOH HOH . K 5 HOH B 89 489 155 HOH HOH . K 5 HOH B 90 490 61 HOH HOH . K 5 HOH B 91 491 136 HOH HOH . K 5 HOH B 92 492 170 HOH HOH . K 5 HOH B 93 493 165 HOH HOH . K 5 HOH B 94 494 172 HOH HOH . K 5 HOH B 95 495 71 HOH HOH . K 5 HOH B 96 496 166 HOH HOH . K 5 HOH B 97 497 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAF AX7 . . . F 4 -17.387 -0.527 -14.591 1 26.73 ? NAF AX7 304 A 1 HETATM 2 C CAI AX7 . . . F 4 -16.581 0.524 -14.154 1 25.47 ? CAI AX7 304 A 1 HETATM 3 C CAD AX7 . . . F 4 -15.546 1.198 -14.797 1 25.62 ? CAD AX7 304 A 1 HETATM 4 C CAB AX7 . . . F 4 -14.884 2.218 -14.125 1 26 ? CAB AX7 304 A 1 HETATM 5 C CAC AX7 . . . F 4 -15.243 2.564 -12.827 1 25.89 ? CAC AX7 304 A 1 HETATM 6 C CAE AX7 . . . F 4 -16.281 1.909 -12.183 1 25.28 ? CAE AX7 304 A 1 HETATM 7 C CAJ AX7 . . . F 4 -16.941 0.894 -12.859 1 25.68 ? CAJ AX7 304 A 1 HETATM 8 N NAG AX7 . . . F 4 -17.981 0.064 -12.503 1 26.93 ? NAG AX7 304 A 1 HETATM 9 C CAH AX7 . . . F 4 -18.213 -0.765 -13.563 1 26.64 ? CAH AX7 304 A 1 HETATM 10 N NAA AX7 . . . F 4 -19.166 -1.698 -13.543 1 28.56 ? NAA AX7 304 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #