data_5Z9K # _model_server_result.job_id d2fn3XivUzn7iLQ4iVV-MA _model_server_result.datetime_utc '2024-10-19 03:39:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5Z9K # _exptl.entry_id 5Z9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.427 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ethyl-6-[(2R)-2-(hydroxymethyl)pyrrolidin-1-yl]sulfonyl-benzo[cd]indol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z9K _cell.length_a 32.918 _cell.length_b 48.245 _cell.length_c 80.238 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 N2 O4 S' _chem_comp.formula_weight 360.427 _chem_comp.id 99X _chem_comp.mon_nstd_flag . _chem_comp.name 1-ethyl-6-[(2R)-2-(hydroxymethyl)pyrrolidin-1-yl]sulfonyl-benzo[cd]indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C19 99X sing 1 n n C14 N03 99X sing 2 n n N03 C04 99X sing 3 n n N03 C02 99X sing 4 n n O13 C04 99X doub 5 n n C08 C02 99X doub 6 n y C08 C07 99X sing 7 n y C04 C09 99X sing 8 n n C02 C01 99X sing 9 n y C07 C06 99X doub 10 n y C01 C09 99X doub 11 n y C01 C05 99X sing 12 n y C09 C10 99X sing 13 n y C06 C05 99X sing 14 n y C06 S15 99X sing 15 n n C05 C12 99X doub 16 n y O16 S15 99X doub 17 n n C10 C11 99X doub 18 n y S15 O17 99X doub 19 n n S15 N18 99X sing 20 n n C12 C11 99X sing 21 n y C20 N18 99X sing 22 n n C20 C21 99X sing 23 n n N18 C23 99X sing 24 n n C23 C22 99X sing 25 n n C23 C24 99X sing 26 n n C21 C22 99X sing 27 n n C24 O25 99X sing 28 n n C10 H101 99X sing 29 n n C20 H201 99X sing 30 n n C20 H202 99X sing 31 n n C21 H211 99X sing 32 n n C21 H212 99X sing 33 n n C22 H222 99X sing 34 n n C22 H221 99X sing 35 n n C24 H241 99X sing 36 n n C24 H242 99X sing 37 n n C07 H071 99X sing 38 n n C08 H081 99X sing 39 n n C11 H111 99X sing 40 n n C12 H121 99X sing 41 n n C14 H141 99X sing 42 n n C14 H142 99X sing 43 n n C19 H191 99X sing 44 n n C19 H192 99X sing 45 n n C19 H193 99X sing 46 n n C23 H231 99X sing 47 n n O25 H251 99X sing 48 n n # _atom_sites.entry_id 5Z9K _atom_sites.fract_transf_matrix[1][1] 0.030379 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 99X A 1 201 1 99X LIG . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 4 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 26 HOH HOH . C 3 HOH A 5 305 37 HOH HOH . C 3 HOH A 6 306 5 HOH HOH . C 3 HOH A 7 307 18 HOH HOH . C 3 HOH A 8 308 11 HOH HOH . C 3 HOH A 9 309 12 HOH HOH . C 3 HOH A 10 310 6 HOH HOH . C 3 HOH A 11 311 16 HOH HOH . C 3 HOH A 12 312 13 HOH HOH . C 3 HOH A 13 313 19 HOH HOH . C 3 HOH A 14 314 10 HOH HOH . C 3 HOH A 15 315 7 HOH HOH . C 3 HOH A 16 316 2 HOH HOH . C 3 HOH A 17 317 32 HOH HOH . C 3 HOH A 18 318 35 HOH HOH . C 3 HOH A 19 319 24 HOH HOH . C 3 HOH A 20 320 27 HOH HOH . C 3 HOH A 21 321 36 HOH HOH . C 3 HOH A 22 322 8 HOH HOH . C 3 HOH A 23 323 39 HOH HOH . C 3 HOH A 24 324 23 HOH HOH . C 3 HOH A 25 325 29 HOH HOH . C 3 HOH A 26 326 15 HOH HOH . C 3 HOH A 27 327 34 HOH HOH . C 3 HOH A 28 328 14 HOH HOH . C 3 HOH A 29 329 42 HOH HOH . C 3 HOH A 30 330 28 HOH HOH . C 3 HOH A 31 331 50 HOH HOH . C 3 HOH A 32 332 21 HOH HOH . C 3 HOH A 33 333 45 HOH HOH . C 3 HOH A 34 334 9 HOH HOH . C 3 HOH A 35 335 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 99X . . . B 2 -13.707 -7.529 1.761 1 36.86 ? C10 99X 201 A 1 HETATM 2 C C20 99X . . . B 2 -7.323 -6.498 3.544 1 55.31 ? C20 99X 201 A 1 HETATM 3 C C21 99X . . . B 2 -7.505 -5.679 4.924 1 55.39 ? C21 99X 201 A 1 HETATM 4 C C22 99X . . . B 2 -8.719 -5.935 5.279 1 57.61 ? C22 99X 201 A 1 HETATM 5 C C24 99X . . . B 2 -8.988 -8.298 5.853 1 63.4 ? C24 99X 201 A 1 HETATM 6 C C01 99X . . . B 2 -11.457 -6.946 0.631 1 36.08 ? C01 99X 201 A 1 HETATM 7 C C02 99X . . . B 2 -10.839 -6.134 -0.495 1 33.37 ? C02 99X 201 A 1 HETATM 8 N N03 99X . . . B 2 -11.977 -5.418 -1.209 1 34.83 ? N03 99X 201 A 1 HETATM 9 C C04 99X . . . B 2 -13.273 -5.776 -0.508 1 28.22 ? C04 99X 201 A 1 HETATM 10 C C05 99X . . . B 2 -10.662 -7.787 1.56 1 39.45 ? C05 99X 201 A 1 HETATM 11 C C06 99X . . . B 2 -9.114 -7.82 1.314 1 46.67 ? C06 99X 201 A 1 HETATM 12 C C07 99X . . . B 2 -8.446 -7.007 0.193 1 40.29 ? C07 99X 201 A 1 HETATM 13 C C08 99X . . . B 2 -9.309 -6.148 -0.75 1 46.15 ? C08 99X 201 A 1 HETATM 14 C C09 99X . . . B 2 -12.915 -6.769 0.669 1 35.56 ? C09 99X 201 A 1 HETATM 15 C C11 99X . . . B 2 -12.924 -8.423 2.758 1 42.89 ? C11 99X 201 A 1 HETATM 16 C C12 99X . . . B 2 -11.398 -8.564 2.67 1 38.97 ? C12 99X 201 A 1 HETATM 17 O O13 99X . . . B 2 -14.354 -5.384 -0.815 1 36.56 ? O13 99X 201 A 1 HETATM 18 C C14 99X . . . B 2 -11.778 -4.536 -2.333 1 40.62 ? C14 99X 201 A 1 HETATM 19 S S15 99X . . . B 2 -8.042 -8.741 2.403 1 50.24 ? S15 99X 201 A 1 HETATM 20 O O16 99X . . . B 2 -6.756 -8.966 1.74 1 59.7 ? O16 99X 201 A 1 HETATM 21 O O17 99X . . . B 2 -8.55 -10.067 2.777 1 60.7 ? O17 99X 201 A 1 HETATM 22 N N18 99X . . . B 2 -7.877 -7.682 3.724 1 50.87 ? N18 99X 201 A 1 HETATM 23 C C19 99X . . . B 2 -11.282 -3.215 -1.745 1 37.51 ? C19 99X 201 A 1 HETATM 24 C C23 99X . . . B 2 -8.999 -7.372 4.758 1 57.88 ? C23 99X 201 A 1 HETATM 25 O O25 99X . . . B 2 -9.91 -7.929 6.853 1 60.2 ? O25 99X 201 A 1 HETATM 26 H H101 99X . . . B 2 -14.631 -7.447 1.821 1 44.23 ? H101 99X 201 A 1 HETATM 27 H H201 99X . . . B 2 -7.771 -6.031 2.821 1 66.37 ? H201 99X 201 A 1 HETATM 28 H H202 99X . . . B 2 -6.379 -6.602 3.344 1 66.37 ? H202 99X 201 A 1 HETATM 29 H H211 99X . . . B 2 -7.39 -4.728 4.771 1 66.46 ? H211 99X 201 A 1 HETATM 30 H H212 99X . . . B 2 -6.881 -6 5.593 1 66.46 ? H212 99X 201 A 1 HETATM 31 H H222 99X . . . B 2 -8.799 -5.907 6.246 1 69.13 ? H222 99X 201 A 1 HETATM 32 H H221 99X . . . B 2 -9.33 -5.304 4.867 1 69.13 ? H221 99X 201 A 1 HETATM 33 H H241 99X . . . B 2 -8.098 -8.324 6.237 1 76.08 ? H241 99X 201 A 1 HETATM 34 H H242 99X . . . B 2 -9.216 -9.181 5.523 1 76.08 ? H242 99X 201 A 1 HETATM 35 H H071 99X . . . B 2 -7.523 -7.035 0.084 1 48.34 ? H071 99X 201 A 1 HETATM 36 H H081 99X . . . B 2 -8.927 -5.646 -1.434 1 55.38 ? H081 99X 201 A 1 HETATM 37 H H111 99X . . . B 2 -13.387 -8.881 3.422 1 51.46 ? H111 99X 201 A 1 HETATM 38 H H121 99X . . . B 2 -10.93 -9.096 3.274 1 46.76 ? H121 99X 201 A 1 HETATM 39 H H141 99X . . . B 2 -11.112 -4.905 -2.935 1 48.75 ? H141 99X 201 A 1 HETATM 40 H H142 99X . . . B 2 -12.615 -4.4 -2.804 1 48.75 ? H142 99X 201 A 1 HETATM 41 H H191 99X . . . B 2 -10.645 -3.395 -1.036 1 45.01 ? H191 99X 201 A 1 HETATM 42 H H192 99X . . . B 2 -12.034 -2.718 -1.387 1 45.01 ? H192 99X 201 A 1 HETATM 43 H H193 99X . . . B 2 -10.852 -2.693 -2.441 1 45.01 ? H193 99X 201 A 1 HETATM 44 H H231 99X . . . B 2 -9.862 -7.394 4.316 1 69.45 ? H231 99X 201 A 1 HETATM 45 H H251 99X . . . B 2 -10.701 -8.024 6.558 1 72.24 ? H251 99X 201 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 45 #