data_5Z9L
#
_model_server_result.job_id            xLe4cFH5ubYKUMxoig2-dw 
_model_server_result.datetime_utc      '2024-11-22 17:27:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5z9l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":304}' 
#
_entry.id    5Z9L 
#
_exptl.entry_id    5Z9L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              133.151 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1H-benzimidazol-2-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Z9L 
_cell.length_a            61.07 
_cell.length_b            69.065 
_cell.length_c            102.121 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Z9L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C7 H7 N3' 
_chem_comp.formula_weight    133.151 
_chem_comp.id                AX7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1H-benzimidazol-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAF CAI AX7 sing 84 n y 
NAF CAH AX7 sing 85 n y 
CAI CAD AX7 doub 86 n y 
CAI CAJ AX7 sing 87 n y 
CAD CAB AX7 sing 88 n y 
CAB CAC AX7 doub 89 n y 
CAC CAE AX7 sing 90 n y 
CAE CAJ AX7 doub 91 n y 
CAJ NAG AX7 sing 92 n y 
NAG CAH AX7 doub 93 n y 
CAH NAA AX7 sing 94 n n 
NAF HNAF AX7 sing 95 n n 
CAD HAD AX7 sing 96 n n 
CAB HAB AX7 sing 97 n n 
CAC HAC AX7 sing 98 n n 
CAE HAE AX7 sing 99 n n 
NAA HNAA AX7 sing 100 n n 
NAA HNAB AX7 sing 101 n n 
#
_atom_sites.entry_id                     5Z9L 
_atom_sites.fract_transf_matrix[1][1]    0.016375 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009792 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 301 1 PO4 PO4 . 
D 2 PO4 A 1 302 2 PO4 PO4 . 
E 3 8H8 A 1 303 1 8H8 8H8 . 
F 2 PO4 B 1 301 3 PO4 PO4 . 
G 2 PO4 B 1 302 4 PO4 PO4 . 
H 3 8H8 B 1 303 2 8H8 8H8 . 
I 4 AX7 B 1 304 1 AX7 AX7 . 
J 5 HOH A 1 401 7 HOH HOH . 
J 5 HOH A 2 402 110 HOH HOH . 
J 5 HOH A 3 403 74 HOH HOH . 
J 5 HOH A 4 404 42 HOH HOH . 
J 5 HOH A 5 405 153 HOH HOH . 
J 5 HOH A 6 406 10 HOH HOH . 
J 5 HOH A 7 407 67 HOH HOH . 
J 5 HOH A 8 408 57 HOH HOH . 
J 5 HOH A 9 409 58 HOH HOH . 
J 5 HOH A 10 410 34 HOH HOH . 
J 5 HOH A 11 411 154 HOH HOH . 
J 5 HOH A 12 412 52 HOH HOH . 
J 5 HOH A 13 413 146 HOH HOH . 
J 5 HOH A 14 414 75 HOH HOH . 
J 5 HOH A 15 415 50 HOH HOH . 
J 5 HOH A 16 416 129 HOH HOH . 
J 5 HOH A 17 417 157 HOH HOH . 
J 5 HOH A 18 418 29 HOH HOH . 
J 5 HOH A 19 419 175 HOH HOH . 
J 5 HOH A 20 420 45 HOH HOH . 
J 5 HOH A 21 421 15 HOH HOH . 
J 5 HOH A 22 422 6 HOH HOH . 
J 5 HOH A 23 423 5 HOH HOH . 
J 5 HOH A 24 424 3 HOH HOH . 
J 5 HOH A 25 425 16 HOH HOH . 
J 5 HOH A 26 426 26 HOH HOH . 
J 5 HOH A 27 427 94 HOH HOH . 
J 5 HOH A 28 428 126 HOH HOH . 
J 5 HOH A 29 429 137 HOH HOH . 
J 5 HOH A 30 430 33 HOH HOH . 
J 5 HOH A 31 431 83 HOH HOH . 
J 5 HOH A 32 432 43 HOH HOH . 
J 5 HOH A 33 433 56 HOH HOH . 
J 5 HOH A 34 434 125 HOH HOH . 
J 5 HOH A 35 435 70 HOH HOH . 
J 5 HOH A 36 436 96 HOH HOH . 
J 5 HOH A 37 437 100 HOH HOH . 
J 5 HOH A 38 438 32 HOH HOH . 
J 5 HOH A 39 439 55 HOH HOH . 
J 5 HOH A 40 440 85 HOH HOH . 
J 5 HOH A 41 441 40 HOH HOH . 
J 5 HOH A 42 442 17 HOH HOH . 
J 5 HOH A 43 443 51 HOH HOH . 
J 5 HOH A 44 444 41 HOH HOH . 
J 5 HOH A 45 445 155 HOH HOH . 
J 5 HOH A 46 446 150 HOH HOH . 
J 5 HOH A 47 447 36 HOH HOH . 
J 5 HOH A 48 448 19 HOH HOH . 
J 5 HOH A 49 449 24 HOH HOH . 
J 5 HOH A 50 450 161 HOH HOH . 
J 5 HOH A 51 451 160 HOH HOH . 
J 5 HOH A 52 452 79 HOH HOH . 
J 5 HOH A 53 453 82 HOH HOH . 
J 5 HOH A 54 454 132 HOH HOH . 
J 5 HOH A 55 455 158 HOH HOH . 
J 5 HOH A 56 456 134 HOH HOH . 
J 5 HOH A 57 457 149 HOH HOH . 
J 5 HOH A 58 458 102 HOH HOH . 
J 5 HOH A 59 459 63 HOH HOH . 
J 5 HOH A 60 460 62 HOH HOH . 
J 5 HOH A 61 461 131 HOH HOH . 
J 5 HOH A 62 462 148 HOH HOH . 
J 5 HOH A 63 463 115 HOH HOH . 
J 5 HOH A 64 464 104 HOH HOH . 
J 5 HOH A 65 465 162 HOH HOH . 
J 5 HOH A 66 466 72 HOH HOH . 
J 5 HOH A 67 467 106 HOH HOH . 
J 5 HOH A 68 468 108 HOH HOH . 
K 5 HOH B 1 401 77 HOH HOH . 
K 5 HOH B 2 402 28 HOH HOH . 
K 5 HOH B 3 403 166 HOH HOH . 
K 5 HOH B 4 404 136 HOH HOH . 
K 5 HOH B 5 405 47 HOH HOH . 
K 5 HOH B 6 406 9 HOH HOH . 
K 5 HOH B 7 407 130 HOH HOH . 
K 5 HOH B 8 408 144 HOH HOH . 
K 5 HOH B 9 409 172 HOH HOH . 
K 5 HOH B 10 410 114 HOH HOH . 
K 5 HOH B 11 411 86 HOH HOH . 
K 5 HOH B 12 412 81 HOH HOH . 
K 5 HOH B 13 413 27 HOH HOH . 
K 5 HOH B 14 414 22 HOH HOH . 
K 5 HOH B 15 415 59 HOH HOH . 
K 5 HOH B 16 416 2 HOH HOH . 
K 5 HOH B 17 417 4 HOH HOH . 
K 5 HOH B 18 418 124 HOH HOH . 
K 5 HOH B 19 419 54 HOH HOH . 
K 5 HOH B 20 420 107 HOH HOH . 
K 5 HOH B 21 421 20 HOH HOH . 
K 5 HOH B 22 422 171 HOH HOH . 
K 5 HOH B 23 423 30 HOH HOH . 
K 5 HOH B 24 424 142 HOH HOH . 
K 5 HOH B 25 425 88 HOH HOH . 
K 5 HOH B 26 426 140 HOH HOH . 
K 5 HOH B 27 427 53 HOH HOH . 
K 5 HOH B 28 428 37 HOH HOH . 
K 5 HOH B 29 429 76 HOH HOH . 
K 5 HOH B 30 430 31 HOH HOH . 
K 5 HOH B 31 431 119 HOH HOH . 
K 5 HOH B 32 432 78 HOH HOH . 
K 5 HOH B 33 433 65 HOH HOH . 
K 5 HOH B 34 434 8 HOH HOH . 
K 5 HOH B 35 435 167 HOH HOH . 
K 5 HOH B 36 436 46 HOH HOH . 
K 5 HOH B 37 437 93 HOH HOH . 
K 5 HOH B 38 438 87 HOH HOH . 
K 5 HOH B 39 439 39 HOH HOH . 
K 5 HOH B 40 440 69 HOH HOH . 
K 5 HOH B 41 441 143 HOH HOH . 
K 5 HOH B 42 442 163 HOH HOH . 
K 5 HOH B 43 443 127 HOH HOH . 
K 5 HOH B 44 444 18 HOH HOH . 
K 5 HOH B 45 445 68 HOH HOH . 
K 5 HOH B 46 446 13 HOH HOH . 
K 5 HOH B 47 447 66 HOH HOH . 
K 5 HOH B 48 448 141 HOH HOH . 
K 5 HOH B 49 449 11 HOH HOH . 
K 5 HOH B 50 450 159 HOH HOH . 
K 5 HOH B 51 451 60 HOH HOH . 
K 5 HOH B 52 452 38 HOH HOH . 
K 5 HOH B 53 453 118 HOH HOH . 
K 5 HOH B 54 454 99 HOH HOH . 
K 5 HOH B 55 455 170 HOH HOH . 
K 5 HOH B 56 456 103 HOH HOH . 
K 5 HOH B 57 457 44 HOH HOH . 
K 5 HOH B 58 458 12 HOH HOH . 
K 5 HOH B 59 459 61 HOH HOH . 
K 5 HOH B 60 460 25 HOH HOH . 
K 5 HOH B 61 461 139 HOH HOH . 
K 5 HOH B 62 462 49 HOH HOH . 
K 5 HOH B 63 463 138 HOH HOH . 
K 5 HOH B 64 464 14 HOH HOH . 
K 5 HOH B 65 465 168 HOH HOH . 
K 5 HOH B 66 466 145 HOH HOH . 
K 5 HOH B 67 467 112 HOH HOH . 
K 5 HOH B 68 468 64 HOH HOH . 
K 5 HOH B 69 469 92 HOH HOH . 
K 5 HOH B 70 470 89 HOH HOH . 
K 5 HOH B 71 471 23 HOH HOH . 
K 5 HOH B 72 472 121 HOH HOH . 
K 5 HOH B 73 473 176 HOH HOH . 
K 5 HOH B 74 474 147 HOH HOH . 
K 5 HOH B 75 475 173 HOH HOH . 
K 5 HOH B 76 476 98 HOH HOH . 
K 5 HOH B 77 477 84 HOH HOH . 
K 5 HOH B 78 478 122 HOH HOH . 
K 5 HOH B 79 479 80 HOH HOH . 
K 5 HOH B 80 480 116 HOH HOH . 
K 5 HOH B 81 481 73 HOH HOH . 
K 5 HOH B 82 482 151 HOH HOH . 
K 5 HOH B 83 483 169 HOH HOH . 
K 5 HOH B 84 484 117 HOH HOH . 
K 5 HOH B 85 485 165 HOH HOH . 
K 5 HOH B 86 486 90 HOH HOH . 
K 5 HOH B 87 487 71 HOH HOH . 
K 5 HOH B 88 488 164 HOH HOH . 
K 5 HOH B 89 489 91 HOH HOH . 
K 5 HOH B 90 490 21 HOH HOH . 
K 5 HOH B 91 491 35 HOH HOH . 
K 5 HOH B 92 492 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N NAF AX7 . . . I 4 13.077 0.33 14.399 1 17.47 ? NAF AX7 304 B 1 
HETATM 2 C CAI AX7 . . . I 4 13.917 -0.688 13.956 1 17.03 ? CAI AX7 304 B 1 
HETATM 3 C CAD AX7 . . . I 4 14.968 -1.333 14.603 1 17.27 ? CAD AX7 304 B 1 
HETATM 4 C CAB AX7 . . . I 4 15.671 -2.325 13.927 1 17.74 ? CAB AX7 304 B 1 
HETATM 5 C CAC AX7 . . . I 4 15.335 -2.672 12.623 1 18.09 ? CAC AX7 304 B 1 
HETATM 6 C CAE AX7 . . . I 4 14.284 -2.039 11.97 1 17.35 ? CAE AX7 304 B 1 
HETATM 7 C CAJ AX7 . . . I 4 13.585 -1.051 12.651 1 17.16 ? CAJ AX7 304 B 1 
HETATM 8 N NAG AX7 . . . I 4 12.521 -0.246 12.295 1 17.21 ? NAG AX7 304 B 1 
HETATM 9 C CAH AX7 . . . I 4 12.259 0.56 13.366 1 17.02 ? CAH AX7 304 B 1 
HETATM 10 N NAA AX7 . . . I 4 11.296 1.478 13.349 1 17.54 ? NAA AX7 304 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#