data_5Z9N # _model_server_result.job_id FBVWisP5wskzkEAFxZGPGw _model_server_result.datetime_utc '2024-10-10 06:29:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5Z9N # _exptl.entry_id 5Z9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.07 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4,6-dichloro-2-(methylsulfanyl)pyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z9N _cell.length_a 97.684 _cell.length_b 97.684 _cell.length_c 54.406 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 Cl2 N2 S' _chem_comp.formula_weight 195.07 _chem_comp.id HX5 _chem_comp.mon_nstd_flag . _chem_comp.name 4,6-dichloro-2-(methylsulfanyl)pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL9 C6 HX5 sing 152 n n N5 C6 HX5 doub 153 n y N5 C4 HX5 sing 154 n y C6 C1 HX5 sing 155 n y S7 C4 HX5 sing 156 n n S7 C8 HX5 sing 157 n n C4 N3 HX5 doub 158 n y C1 C2 HX5 doub 159 n y N3 C2 HX5 sing 160 n y C2 CL1 HX5 sing 161 n n C1 H1 HX5 sing 162 n n C8 H2 HX5 sing 163 n n C8 H3 HX5 sing 164 n n C8 H4 HX5 sing 165 n n # _atom_sites.entry_id 5Z9N _atom_sites.fract_transf_matrix[1][1] 0.010237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HX5 A 1 301 2 HX5 HX5 . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 4 SO4 SO4 . E 3 SO4 A 1 304 5 SO4 SO4 . F 3 SO4 A 1 305 7 SO4 SO4 . G 4 HOH A 1 401 9 HOH HOH . G 4 HOH A 2 402 15 HOH HOH . G 4 HOH A 3 403 27 HOH HOH . G 4 HOH A 4 404 13 HOH HOH . G 4 HOH A 5 405 1 HOH HOH . G 4 HOH A 6 406 20 HOH HOH . G 4 HOH A 7 407 26 HOH HOH . G 4 HOH A 8 408 12 HOH HOH . G 4 HOH A 9 409 29 HOH HOH . G 4 HOH A 10 410 11 HOH HOH . G 4 HOH A 11 411 22 HOH HOH . G 4 HOH A 12 412 21 HOH HOH . G 4 HOH A 13 413 30 HOH HOH . G 4 HOH A 14 414 17 HOH HOH . G 4 HOH A 15 415 25 HOH HOH . G 4 HOH A 16 416 19 HOH HOH . G 4 HOH A 17 417 10 HOH HOH . G 4 HOH A 18 418 16 HOH HOH . G 4 HOH A 19 419 6 HOH HOH . G 4 HOH A 20 420 14 HOH HOH . G 4 HOH A 21 421 4 HOH HOH . G 4 HOH A 22 422 5 HOH HOH . G 4 HOH A 23 423 18 HOH HOH . G 4 HOH A 24 424 23 HOH HOH . G 4 HOH A 25 425 7 HOH HOH . G 4 HOH A 26 426 8 HOH HOH . G 4 HOH A 27 427 2 HOH HOH . G 4 HOH A 28 428 3 HOH HOH . G 4 HOH A 29 429 32 HOH HOH . G 4 HOH A 30 430 28 HOH HOH . G 4 HOH A 31 431 31 HOH HOH . G 4 HOH A 32 432 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HX5 . . . B 2 -37.19 -5.886 -21.149 1 79.55 ? C1 HX5 301 A 1 HETATM 2 C C2 HX5 . . . B 2 -36.389 -4.981 -20.506 1 78.67 ? C2 HX5 301 A 1 HETATM 3 N N3 HX5 . . . B 2 -35.068 -4.903 -20.602 1 77.41 ? N3 HX5 301 A 1 HETATM 4 C C4 HX5 . . . B 2 -34.51 -5.846 -21.369 1 78.22 ? C4 HX5 301 A 1 HETATM 5 N N5 HX5 . . . B 2 -35.154 -6.808 -22.041 1 79.56 ? N5 HX5 301 A 1 HETATM 6 C C6 HX5 . . . B 2 -36.473 -6.799 -21.879 1 81.61 ? C6 HX5 301 A 1 HETATM 7 S S7 HX5 . . . B 2 -32.768 -6.029 -21.463 1 77.49 ? S7 HX5 301 A 1 HETATM 8 C C8 HX5 . . . B 2 -32.174 -4.78 -20.328 1 73 ? C8 HX5 301 A 1 HETATM 9 CL CL9 HX5 . . . B 2 -37.318 -8.175 -22.519 1 91.64 ? CL9 HX5 301 A 1 HETATM 10 CL CL1 HX5 . . . B 2 -37.109 -3.964 -19.3 1 86.48 ? CL1 HX5 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #