data_5ZA1
#
_model_server_result.job_id            Iakk7-BYuTBRh6PcJkIlgw 
_model_server_result.datetime_utc      '2024-11-14 13:22:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5za1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":504}' 
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_entry.id    5ZA1 
#
_exptl.entry_id    5ZA1 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ZA1 
_cell.length_a            97.501 
_cell.length_b            97.501 
_cell.length_c            128.114 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZA1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,P 1 1 
B,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 157 n n 
C1 C2 EDO sing 158 n n 
C1 H11 EDO sing 159 n n 
C1 H12 EDO sing 160 n n 
O1 HO1 EDO sing 161 n n 
C2 O2 EDO sing 162 n n 
C2 H21 EDO sing 163 n n 
C2 H22 EDO sing 164 n n 
O2 HO2 EDO sing 165 n n 
#
_atom_sites.entry_id                     5ZA1 
_atom_sites.fract_transf_matrix[1][1]    0.010256 
_atom_sites.fract_transf_matrix[1][2]    0.005921 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011843 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007806 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 9A0 A 1 501 501 9A0 MOL . 
D 3 EDO A 1 502 603 EDO EDO . 
E 3 EDO A 1 503 606 EDO EDO . 
F 3 EDO A 1 504 613 EDO EDO . 
G 3 EDO A 1 505 614 EDO EDO . 
H 3 EDO A 1 506 616 EDO EDO . 
I 4 DMF A 1 507 701 DMF DMF . 
J 2 9A0 B 1 501 502 9A0 MOL . 
K 3 EDO B 1 502 602 EDO EDO . 
L 3 EDO B 1 503 604 EDO EDO . 
M 3 EDO B 1 504 612 EDO EDO . 
N 3 EDO B 1 505 615 EDO EDO . 
O 4 DMF B 1 506 702 DMF DMF . 
P 5 HOH A 1 601 4 HOH HOH . 
P 5 HOH A 2 602 1 HOH HOH . 
P 5 HOH A 3 603 16 HOH HOH . 
P 5 HOH A 4 604 27 HOH HOH . 
P 5 HOH A 5 605 19 HOH HOH . 
P 5 HOH A 6 606 45 HOH HOH . 
P 5 HOH A 7 607 9 HOH HOH . 
P 5 HOH A 8 608 44 HOH HOH . 
P 5 HOH A 9 609 46 HOH HOH . 
P 5 HOH A 10 610 3 HOH HOH . 
P 5 HOH A 11 611 40 HOH HOH . 
P 5 HOH A 12 612 25 HOH HOH . 
P 5 HOH A 13 613 47 HOH HOH . 
P 5 HOH A 14 614 17 HOH HOH . 
P 5 HOH A 15 615 13 HOH HOH . 
P 5 HOH A 16 616 20 HOH HOH . 
P 5 HOH A 17 617 18 HOH HOH . 
P 5 HOH A 18 618 24 HOH HOH . 
P 5 HOH A 19 619 15 HOH HOH . 
P 5 HOH A 20 620 10 HOH HOH . 
P 5 HOH A 21 621 26 HOH HOH . 
P 5 HOH A 22 622 29 HOH HOH . 
P 5 HOH A 23 623 41 HOH HOH . 
P 5 HOH A 24 624 7 HOH HOH . 
P 5 HOH A 25 625 6 HOH HOH . 
P 5 HOH A 26 626 43 HOH HOH . 
P 5 HOH A 27 627 98 HOH HOH . 
P 5 HOH A 28 628 22 HOH HOH . 
P 5 HOH A 29 629 39 HOH HOH . 
P 5 HOH A 30 630 42 HOH HOH . 
P 5 HOH A 31 631 8 HOH HOH . 
P 5 HOH A 32 632 12 HOH HOH . 
P 5 HOH A 33 633 31 HOH HOH . 
P 5 HOH A 34 634 37 HOH HOH . 
P 5 HOH A 35 635 2 HOH HOH . 
P 5 HOH A 36 636 5 HOH HOH . 
P 5 HOH A 37 637 36 HOH HOH . 
P 5 HOH A 38 638 34 HOH HOH . 
P 5 HOH A 39 639 11 HOH HOH . 
P 5 HOH A 40 640 14 HOH HOH . 
P 5 HOH A 41 641 30 HOH HOH . 
P 5 HOH A 42 642 32 HOH HOH . 
P 5 HOH A 43 643 21 HOH HOH . 
P 5 HOH A 44 644 28 HOH HOH . 
P 5 HOH A 45 645 38 HOH HOH . 
P 5 HOH A 46 646 23 HOH HOH . 
P 5 HOH A 47 647 100 HOH HOH . 
P 5 HOH A 48 648 33 HOH HOH . 
P 5 HOH A 49 649 99 HOH HOH . 
P 5 HOH A 50 650 35 HOH HOH . 
Q 5 HOH B 1 601 82 HOH HOH . 
Q 5 HOH B 2 602 89 HOH HOH . 
Q 5 HOH B 3 603 65 HOH HOH . 
Q 5 HOH B 4 604 85 HOH HOH . 
Q 5 HOH B 5 605 87 HOH HOH . 
Q 5 HOH B 6 606 66 HOH HOH . 
Q 5 HOH B 7 607 92 HOH HOH . 
Q 5 HOH B 8 608 51 HOH HOH . 
Q 5 HOH B 9 609 48 HOH HOH . 
Q 5 HOH B 10 610 58 HOH HOH . 
Q 5 HOH B 11 611 70 HOH HOH . 
Q 5 HOH B 12 612 56 HOH HOH . 
Q 5 HOH B 13 613 53 HOH HOH . 
Q 5 HOH B 14 614 61 HOH HOH . 
Q 5 HOH B 15 615 49 HOH HOH . 
Q 5 HOH B 16 616 50 HOH HOH . 
Q 5 HOH B 17 617 54 HOH HOH . 
Q 5 HOH B 18 618 94 HOH HOH . 
Q 5 HOH B 19 619 96 HOH HOH . 
Q 5 HOH B 20 620 86 HOH HOH . 
Q 5 HOH B 21 621 64 HOH HOH . 
Q 5 HOH B 22 622 74 HOH HOH . 
Q 5 HOH B 23 623 69 HOH HOH . 
Q 5 HOH B 24 624 63 HOH HOH . 
Q 5 HOH B 25 625 57 HOH HOH . 
Q 5 HOH B 26 626 60 HOH HOH . 
Q 5 HOH B 27 627 52 HOH HOH . 
Q 5 HOH B 28 628 88 HOH HOH . 
Q 5 HOH B 29 629 75 HOH HOH . 
Q 5 HOH B 30 630 84 HOH HOH . 
Q 5 HOH B 31 631 71 HOH HOH . 
Q 5 HOH B 32 632 55 HOH HOH . 
Q 5 HOH B 33 633 91 HOH HOH . 
Q 5 HOH B 34 634 93 HOH HOH . 
Q 5 HOH B 35 635 90 HOH HOH . 
Q 5 HOH B 36 636 72 HOH HOH . 
Q 5 HOH B 37 637 62 HOH HOH . 
Q 5 HOH B 38 638 68 HOH HOH . 
Q 5 HOH B 39 639 77 HOH HOH . 
Q 5 HOH B 40 640 78 HOH HOH . 
Q 5 HOH B 41 641 80 HOH HOH . 
Q 5 HOH B 42 642 95 HOH HOH . 
Q 5 HOH B 43 643 79 HOH HOH . 
Q 5 HOH B 44 644 83 HOH HOH . 
Q 5 HOH B 45 645 76 HOH HOH . 
Q 5 HOH B 46 646 73 HOH HOH . 
Q 5 HOH B 47 647 81 HOH HOH . 
Q 5 HOH B 48 648 67 HOH HOH . 
Q 5 HOH B 49 649 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 3 -15.692 29.654 8.065 1 56.04 ? C1 EDO 504 B 1 
HETATM 2 O O1 EDO . . . M 3 -15.706 29.42 9.493 1 48.01 ? O1 EDO 504 B 1 
HETATM 3 C C2 EDO . . . M 3 -14.697 28.811 7.254 1 57.67 ? C2 EDO 504 B 1 
HETATM 4 O O2 EDO . . . M 3 -14.62 27.421 7.617 1 58.16 ? O2 EDO 504 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#