data_5ZA7
#
_model_server_result.job_id            JPOMaqzJHAHUV7mwJCxINQ 
_model_server_result.datetime_utc      '2024-11-05 06:37:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5za7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5ZA7 
#
_exptl.entry_id    5ZA7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              311.771 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-azanyl-5-(azepan-1-yl)-N-[bis(azanyl)methylidene]-6-chloranyl-pyrazine-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ZA7 
_cell.length_a            120.462 
_cell.length_b            120.462 
_cell.length_c            42.355 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZA7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
#
_chem_comp.formula           'C12 H18 Cl N7 O' 
_chem_comp.formula_weight    311.771 
_chem_comp.id                HMX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-azanyl-5-(azepan-1-yl)-N-[bis(azanyl)methylidene]-6-chloranyl-pyrazine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HMA 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C3 HMX sing 150 n n 
O1 C5 HMX doub 151 n n 
C3 N1 HMX doub 152 n y 
C3 C4 HMX sing 153 n y 
N6 C12 HMX sing 154 n n 
C5 C4 HMX sing 155 n n 
C5 N5 HMX sing 156 n n 
N1 C2 HMX sing 157 n y 
C4 N2 HMX doub 158 n y 
C10 C11 HMX sing 159 n n 
C10 C9 HMX sing 160 n n 
C12 N5 HMX doub 161 n n 
C12 N7 HMX sing 162 n n 
C11 N4 HMX sing 163 n n 
C2 N4 HMX sing 164 n n 
C2 C1 HMX doub 165 n y 
C9 C8 HMX sing 166 n n 
N2 C1 HMX sing 167 n y 
N4 C6 HMX sing 168 n n 
C1 CL1 HMX sing 169 n n 
C8 C7 HMX sing 170 n n 
C6 C7 HMX sing 171 n n 
C6 H1 HMX sing 172 n n 
C6 H2 HMX sing 173 n n 
C7 H3 HMX sing 174 n n 
C7 H4 HMX sing 175 n n 
C8 H5 HMX sing 176 n n 
C8 H6 HMX sing 177 n n 
C9 H7 HMX sing 178 n n 
C9 H8 HMX sing 179 n n 
C10 H9 HMX sing 180 n n 
C10 H10 HMX sing 181 n n 
C11 H11 HMX sing 182 n n 
C11 H12 HMX sing 183 n n 
N7 H14 HMX sing 184 n n 
N7 H15 HMX sing 185 n n 
N6 H16 HMX sing 186 n n 
N3 H17 HMX sing 187 n n 
N3 H18 HMX sing 188 n n 
N6 H13 HMX sing 189 n n 
#
_atom_sites.entry_id                     5ZA7 
_atom_sites.fract_transf_matrix[1][1]    0.008301 
_atom_sites.fract_transf_matrix[1][2]    0.004793 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009586 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02361 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HMX U 1 301 301 HMX HMX . 
C 3 SO4 U 1 302 302 SO4 SO4 . 
D 4 HOH U 1 401 401 HOH HOH . 
D 4 HOH U 2 402 402 HOH HOH . 
D 4 HOH U 3 403 403 HOH HOH . 
D 4 HOH U 4 404 404 HOH HOH . 
D 4 HOH U 5 405 405 HOH HOH . 
D 4 HOH U 6 406 406 HOH HOH . 
D 4 HOH U 7 407 407 HOH HOH . 
D 4 HOH U 8 408 408 HOH HOH . 
D 4 HOH U 9 409 409 HOH HOH . 
D 4 HOH U 10 410 410 HOH HOH . 
D 4 HOH U 11 411 411 HOH HOH . 
D 4 HOH U 12 412 412 HOH HOH . 
D 4 HOH U 13 413 413 HOH HOH . 
D 4 HOH U 14 414 414 HOH HOH . 
D 4 HOH U 15 415 415 HOH HOH . 
D 4 HOH U 16 416 416 HOH HOH . 
D 4 HOH U 17 417 417 HOH HOH . 
D 4 HOH U 18 418 418 HOH HOH . 
D 4 HOH U 19 419 419 HOH HOH . 
D 4 HOH U 20 420 420 HOH HOH . 
D 4 HOH U 21 421 421 HOH HOH . 
D 4 HOH U 22 422 422 HOH HOH . 
D 4 HOH U 23 423 423 HOH HOH . 
D 4 HOH U 24 424 424 HOH HOH . 
D 4 HOH U 25 425 425 HOH HOH . 
D 4 HOH U 26 426 426 HOH HOH . 
D 4 HOH U 27 427 427 HOH HOH . 
D 4 HOH U 28 428 428 HOH HOH . 
D 4 HOH U 29 429 429 HOH HOH . 
D 4 HOH U 30 430 430 HOH HOH . 
D 4 HOH U 31 431 431 HOH HOH . 
D 4 HOH U 32 432 432 HOH HOH . 
D 4 HOH U 33 433 433 HOH HOH . 
D 4 HOH U 34 434 434 HOH HOH . 
D 4 HOH U 35 435 435 HOH HOH . 
D 4 HOH U 36 436 436 HOH HOH . 
D 4 HOH U 37 437 437 HOH HOH . 
D 4 HOH U 38 438 438 HOH HOH . 
D 4 HOH U 39 439 439 HOH HOH . 
D 4 HOH U 40 440 440 HOH HOH . 
D 4 HOH U 41 441 443 HOH HOH . 
D 4 HOH U 42 442 441 HOH HOH . 
D 4 HOH U 43 443 442 HOH HOH . 
D 4 HOH U 44 444 444 HOH HOH . 
D 4 HOH U 45 445 445 HOH HOH . 
D 4 HOH U 46 446 446 HOH HOH . 
D 4 HOH U 47 447 447 HOH HOH . 
D 4 HOH U 48 448 448 HOH HOH . 
D 4 HOH U 49 449 449 HOH HOH . 
D 4 HOH U 50 450 450 HOH HOH . 
D 4 HOH U 51 451 451 HOH HOH . 
D 4 HOH U 52 452 452 HOH HOH . 
D 4 HOH U 53 453 453 HOH HOH . 
D 4 HOH U 54 454 454 HOH HOH . 
D 4 HOH U 55 455 455 HOH HOH . 
D 4 HOH U 56 456 456 HOH HOH . 
D 4 HOH U 57 457 457 HOH HOH . 
D 4 HOH U 58 458 463 HOH HOH . 
D 4 HOH U 59 459 458 HOH HOH . 
D 4 HOH U 60 460 459 HOH HOH . 
D 4 HOH U 61 461 460 HOH HOH . 
D 4 HOH U 62 462 461 HOH HOH . 
D 4 HOH U 63 463 462 HOH HOH . 
D 4 HOH U 64 464 464 HOH HOH . 
D 4 HOH U 65 465 465 HOH HOH . 
D 4 HOH U 66 466 466 HOH HOH . 
D 4 HOH U 67 467 467 HOH HOH . 
D 4 HOH U 68 468 468 HOH HOH . 
D 4 HOH U 69 469 469 HOH HOH . 
D 4 HOH U 70 470 470 HOH HOH . 
D 4 HOH U 71 471 471 HOH HOH . 
D 4 HOH U 72 472 472 HOH HOH . 
D 4 HOH U 73 473 473 HOH HOH . 
D 4 HOH U 74 474 474 HOH HOH . 
D 4 HOH U 75 475 475 HOH HOH . 
D 4 HOH U 76 476 476 HOH HOH . 
D 4 HOH U 77 477 477 HOH HOH . 
D 4 HOH U 78 478 478 HOH HOH . 
D 4 HOH U 79 479 479 HOH HOH . 
D 4 HOH U 80 480 480 HOH HOH . 
D 4 HOH U 81 481 481 HOH HOH . 
D 4 HOH U 82 482 482 HOH HOH . 
D 4 HOH U 83 483 483 HOH HOH . 
D 4 HOH U 84 484 484 HOH HOH . 
D 4 HOH U 85 485 485 HOH HOH . 
D 4 HOH U 86 486 486 HOH HOH . 
D 4 HOH U 87 487 487 HOH HOH . 
D 4 HOH U 88 488 488 HOH HOH . 
D 4 HOH U 89 489 489 HOH HOH . 
D 4 HOH U 90 490 490 HOH HOH . 
D 4 HOH U 91 491 491 HOH HOH . 
D 4 HOH U 92 492 492 HOH HOH . 
D 4 HOH U 93 493 493 HOH HOH . 
D 4 HOH U 94 494 494 HOH HOH . 
D 4 HOH U 95 495 495 HOH HOH . 
D 4 HOH U 96 496 496 HOH HOH . 
D 4 HOH U 97 497 497 HOH HOH . 
D 4 HOH U 98 498 498 HOH HOH . 
D 4 HOH U 99 499 499 HOH HOH . 
D 4 HOH U 100 500 500 HOH HOH . 
D 4 HOH U 101 501 501 HOH HOH . 
D 4 HOH U 102 502 502 HOH HOH . 
D 4 HOH U 103 503 503 HOH HOH . 
D 4 HOH U 104 504 504 HOH HOH . 
D 4 HOH U 105 505 505 HOH HOH . 
D 4 HOH U 106 506 506 HOH HOH . 
D 4 HOH U 107 507 507 HOH HOH . 
D 4 HOH U 108 508 508 HOH HOH . 
D 4 HOH U 109 509 509 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HMX . . . B 2 -28.079 -16.965 -1.694 1 25.86 ? C1 HMX 301 U 1 
HETATM 2 N N1 HMX . . . B 2 -27.689 -16.044 -3.82 1 23.34 ? N1 HMX 301 U 1 
HETATM 3 C C2 HMX . . . B 2 -27.379 -16.081 -2.499 1 27.04 ? C2 HMX 301 U 1 
HETATM 4 N N2 HMX . . . B 2 -29.015 -17.761 -2.193 1 23.32 ? N2 HMX 301 U 1 
HETATM 5 C C3 HMX . . . B 2 -28.63 -16.856 -4.346 1 21.67 ? C3 HMX 301 U 1 
HETATM 6 C C4 HMX . . . B 2 -29.326 -17.706 -3.503 1 22.18 ? C4 HMX 301 U 1 
HETATM 7 C C5 HMX . . . B 2 -30.376 -18.658 -3.939 1 22.35 ? C5 HMX 301 U 1 
HETATM 8 C C6 HMX . . . B 2 -26.251 -14.913 -0.577 1 33.69 ? C6 HMX 301 U 1 
HETATM 9 C C7 HMX . . . B 2 -25.909 -13.446 -0.329 1 35.74 ? C7 HMX 301 U 1 
HETATM 10 C C8 HMX . . . B 2 -27.001 -12.511 -0.833 1 36.95 ? C8 HMX 301 U 1 
HETATM 11 C C9 HMX . . . B 2 -27.248 -12.604 -2.337 1 37.5 ? C9 HMX 301 U 1 
HETATM 12 C C10 HMX . . . B 2 -26.044 -13.053 -3.173 1 35.06 ? C10 HMX 301 U 1 
HETATM 13 C C11 HMX . . . B 2 -25.555 -14.483 -2.965 1 32.83 ? C11 HMX 301 U 1 
HETATM 14 C C12 HMX . . . B 2 -32.046 -20.136 -3.079 1 20.84 ? C12 HMX 301 U 1 
HETATM 15 O O1 HMX . . . B 2 -30.52 -18.866 -5.134 1 22.11 ? O1 HMX 301 U 1 
HETATM 16 N N5 HMX . . . B 2 -31.075 -19.233 -2.942 1 21.33 ? N5 HMX 301 U 1 
HETATM 17 N N7 HMX . . . B 2 -32.662 -20.594 -1.989 1 20.91 ? N7 HMX 301 U 1 
HETATM 18 N N6 HMX . . . B 2 -32.403 -20.585 -4.277 1 20.56 ? N6 HMX 301 U 1 
HETATM 19 CL CL1 HMX . . . B 2 -27.805 -17.175 0.056 1 32.46 ? CL1 HMX 301 U 1 
HETATM 20 N N3 HMX . . . B 2 -28.888 -16.761 -5.685 1 20.77 ? N3 HMX 301 U 1 
HETATM 21 N N4 HMX . . . B 2 -26.405 -15.189 -2.013 1 31.47 ? N4 HMX 301 U 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           21 
#