data_5ZA8 # _model_server_result.job_id vq3vE4hb_Zw8S2B9BhixVg _model_server_result.datetime_utc '2024-11-05 06:37:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5za8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5ZA8 # _exptl.entry_id 5ZA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.414 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(1-methylpyrazol-4-yl)pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZA8 _cell.length_a 120.768 _cell.length_b 120.768 _cell.length_c 42.717 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? # _chem_comp.formula 'C16 H23 N9 O' _chem_comp.formula_weight 357.414 _chem_comp.id 27I _chem_comp.mon_nstd_flag . _chem_comp.name 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(1-methylpyrazol-4-yl)pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C7 27I sing 1 n n O1 C9 27I doub 2 n n N8 C10 27I doub 3 n n C7 N4 27I doub 4 n y C7 C6 27I sing 5 n y C9 C6 27I sing 6 n n C9 N7 27I sing 7 n n N4 C8 27I sing 8 n y C12 C11 27I sing 9 n n C12 C13 27I sing 10 n n C6 N3 27I doub 11 n y C10 N7 27I sing 12 n n C10 N9 27I sing 13 n n C11 N5 27I sing 14 n n C8 N5 27I sing 15 n n C8 C5 27I doub 16 n y C13 C14 27I sing 17 n n N3 C5 27I sing 18 n y N5 C16 27I sing 19 n n C5 C3 27I sing 20 n n C14 C15 27I sing 21 n n C15 C16 27I sing 22 n n C3 C2 27I sing 23 n y C3 C1 27I doub 24 n y C2 N2 27I doub 25 n y C1 N1 27I sing 26 n y N2 N1 27I sing 27 n y N1 C4 27I sing 28 n n N7 H1 27I sing 29 n n N9 H2 27I sing 30 n n N9 H3 27I sing 31 n n N8 H4 27I sing 32 n n N6 H5 27I sing 33 n n N6 H6 27I sing 34 n n C2 H7 27I sing 35 n n C4 H8 27I sing 36 n n C4 H9 27I sing 37 n n C4 H10 27I sing 38 n n C1 H11 27I sing 39 n n C16 H12 27I sing 40 n n C16 H13 27I sing 41 n n C15 H14 27I sing 42 n n C15 H15 27I sing 43 n n C14 H16 27I sing 44 n n C13 H17 27I sing 45 n n C12 H18 27I sing 46 n n C12 H19 27I sing 47 n n C11 H20 27I sing 48 n n C11 H21 27I sing 49 n n C14 H22 27I sing 50 n n C13 H23 27I sing 51 n n # _atom_sites.entry_id 5ZA8 _atom_sites.fract_transf_matrix[1][1] 0.00828 _atom_sites.fract_transf_matrix[1][2] 0.004781 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 27I U 1 301 301 27I 27I . C 3 HOH U 1 401 401 HOH HOH . C 3 HOH U 2 402 402 HOH HOH . C 3 HOH U 3 403 403 HOH HOH . C 3 HOH U 4 404 404 HOH HOH . C 3 HOH U 5 405 405 HOH HOH . C 3 HOH U 6 406 406 HOH HOH . C 3 HOH U 7 407 407 HOH HOH . C 3 HOH U 8 408 408 HOH HOH . C 3 HOH U 9 409 409 HOH HOH . C 3 HOH U 10 410 410 HOH HOH . C 3 HOH U 11 411 411 HOH HOH . C 3 HOH U 12 412 412 HOH HOH . C 3 HOH U 13 413 413 HOH HOH . C 3 HOH U 14 414 414 HOH HOH . C 3 HOH U 15 415 415 HOH HOH . C 3 HOH U 16 416 416 HOH HOH . C 3 HOH U 17 417 417 HOH HOH . C 3 HOH U 18 418 418 HOH HOH . C 3 HOH U 19 419 419 HOH HOH . C 3 HOH U 20 420 420 HOH HOH . C 3 HOH U 21 421 421 HOH HOH . C 3 HOH U 22 422 422 HOH HOH . C 3 HOH U 23 423 423 HOH HOH . C 3 HOH U 24 424 424 HOH HOH . C 3 HOH U 25 425 425 HOH HOH . C 3 HOH U 26 426 426 HOH HOH . C 3 HOH U 27 427 427 HOH HOH . C 3 HOH U 28 428 428 HOH HOH . C 3 HOH U 29 429 429 HOH HOH . C 3 HOH U 30 430 430 HOH HOH . C 3 HOH U 31 431 431 HOH HOH . C 3 HOH U 32 432 432 HOH HOH . C 3 HOH U 33 433 433 HOH HOH . C 3 HOH U 34 434 434 HOH HOH . C 3 HOH U 35 435 435 HOH HOH . C 3 HOH U 36 436 436 HOH HOH . C 3 HOH U 37 437 437 HOH HOH . C 3 HOH U 38 438 438 HOH HOH . C 3 HOH U 39 439 439 HOH HOH . C 3 HOH U 40 440 440 HOH HOH . C 3 HOH U 41 441 441 HOH HOH . C 3 HOH U 42 442 442 HOH HOH . C 3 HOH U 43 443 443 HOH HOH . C 3 HOH U 44 444 444 HOH HOH . C 3 HOH U 45 445 445 HOH HOH . C 3 HOH U 46 446 446 HOH HOH . C 3 HOH U 47 447 447 HOH HOH . C 3 HOH U 48 448 448 HOH HOH . C 3 HOH U 49 449 449 HOH HOH . C 3 HOH U 50 450 450 HOH HOH . C 3 HOH U 51 451 451 HOH HOH . C 3 HOH U 52 452 452 HOH HOH . C 3 HOH U 53 453 453 HOH HOH . C 3 HOH U 54 454 454 HOH HOH . C 3 HOH U 55 455 455 HOH HOH . C 3 HOH U 56 456 456 HOH HOH . C 3 HOH U 57 457 457 HOH HOH . C 3 HOH U 58 458 458 HOH HOH . C 3 HOH U 59 459 459 HOH HOH . C 3 HOH U 60 460 460 HOH HOH . C 3 HOH U 61 461 461 HOH HOH . C 3 HOH U 62 462 462 HOH HOH . C 3 HOH U 63 463 463 HOH HOH . C 3 HOH U 64 464 464 HOH HOH . C 3 HOH U 65 465 465 HOH HOH . C 3 HOH U 66 466 466 HOH HOH . C 3 HOH U 67 467 467 HOH HOH . C 3 HOH U 68 468 468 HOH HOH . C 3 HOH U 69 469 469 HOH HOH . C 3 HOH U 70 470 470 HOH HOH . C 3 HOH U 71 471 471 HOH HOH . C 3 HOH U 72 472 472 HOH HOH . C 3 HOH U 73 473 473 HOH HOH . C 3 HOH U 74 474 474 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 27I . . . B 2 -26.322 -17.646 2.093 1 42.3 ? N1 27I 301 U 1 HETATM 2 O O1 27I . . . B 2 -30.385 -18.865 -4.703 1 26.76 ? O1 27I 301 U 1 HETATM 3 C C9 27I . . . B 2 -30.171 -18.747 -3.51 1 28.46 ? C9 27I 301 U 1 HETATM 4 N N7 27I . . . B 2 -30.871 -19.363 -2.544 1 26.95 ? N7 27I 301 U 1 HETATM 5 C C10 27I . . . B 2 -31.866 -20.23 -2.705 1 25.46 ? C10 27I 301 U 1 HETATM 6 N N9 27I . . . B 2 -32.455 -20.729 -1.624 1 25.11 ? N9 27I 301 U 1 HETATM 7 N N8 27I . . . B 2 -32.297 -20.586 -3.905 1 25.95 ? N8 27I 301 U 1 HETATM 8 C C6 27I . . . B 2 -29.082 -17.826 -3.055 1 31.76 ? C6 27I 301 U 1 HETATM 9 N N3 27I . . . B 2 -28.598 -17.977 -1.793 1 33.23 ? N3 27I 301 U 1 HETATM 10 C C7 27I . . . B 2 -28.546 -16.839 -3.866 1 33.61 ? C7 27I 301 U 1 HETATM 11 N N6 27I . . . B 2 -28.978 -16.62 -5.136 1 35.44 ? N6 27I 301 U 1 HETATM 12 N N4 27I . . . B 2 -27.569 -16.054 -3.355 1 35.2 ? N4 27I 301 U 1 HETATM 13 C C8 27I . . . B 2 -27.08 -16.204 -2.092 1 36.85 ? C8 27I 301 U 1 HETATM 14 C C5 27I . . . B 2 -27.609 -17.205 -1.257 1 36.69 ? C5 27I 301 U 1 HETATM 15 C C3 27I . . . B 2 -27.226 -17.518 0.08 1 38.16 ? C3 27I 301 U 1 HETATM 16 C C2 27I . . . B 2 -27.813 -18.539 0.822 1 40.53 ? C2 27I 301 U 1 HETATM 17 N N2 27I . . . B 2 -27.275 -18.646 2.055 1 41.1 ? N2 27I 301 U 1 HETATM 18 C C4 27I . . . B 2 -25.578 -17.525 3.374 1 43.97 ? C4 27I 301 U 1 HETATM 19 C C1 27I . . . B 2 -26.274 -16.98 0.944 1 39.67 ? C1 27I 301 U 1 HETATM 20 N N5 27I . . . B 2 -26.11 -15.264 -1.716 1 41.64 ? N5 27I 301 U 1 HETATM 21 C C16 27I . . . B 2 -26.448 -14.336 -0.614 1 45.31 ? C16 27I 301 U 1 HETATM 22 C C15 27I . . . B 2 -26.715 -12.917 -1.097 1 46.67 ? C15 27I 301 U 1 HETATM 23 C C14 27I . . . B 2 -25.416 -12.112 -1.144 1 46.99 ? C14 27I 301 U 1 HETATM 24 C C13 27I . . . B 2 -24.325 -12.671 -2.067 1 47.51 ? C13 27I 301 U 1 HETATM 25 C C12 27I . . . B 2 -24.755 -13.768 -3.056 1 46.38 ? C12 27I 301 U 1 HETATM 26 C C11 27I . . . B 2 -24.837 -15.143 -2.403 1 44.43 ? C11 27I 301 U 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #