data_5ZA9 # _model_server_result.job_id OvUkGrJQH0Zq1ffwU_eMKA _model_server_result.datetime_utc '2024-11-05 04:51:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5za9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5ZA9 # _exptl.entry_id 5ZA9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 393.442 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-azanyl-5-(azepan-1-yl)-6-(1-benzofuran-2-yl)-Ncarbamimidoyl-pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZA9 _cell.length_a 120.51 _cell.length_b 120.51 _cell.length_c 42.403 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZA9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? # _chem_comp.formula 'C20 H23 N7 O2' _chem_comp.formula_weight 393.442 _chem_comp.id 50I _chem_comp.mon_nstd_flag . _chem_comp.name 3-azanyl-5-(azepan-1-yl)-6-(1-benzofuran-2-yl)-Ncarbamimidoyl-pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 50I doub 1 n y C19 C20 50I sing 2 n y C18 C17 50I sing 3 n y C20 C15 50I doub 4 n y C17 C14 50I doub 5 n y C15 C14 50I sing 6 n y C15 C16 50I sing 7 n y C14 O2 50I sing 8 n y C16 C11 50I doub 9 n y O2 C11 50I sing 10 n y C1 C2 50I sing 11 n n C1 C6 50I sing 12 n n C11 C8 50I sing 13 n n C2 C3 50I sing 14 n n C3 C4 50I sing 15 n n C6 N1 50I sing 16 n n C8 N2 50I doub 17 n y C8 C7 50I sing 18 n y N1 C5 50I sing 19 n n N1 C7 50I sing 20 n n C5 C4 50I sing 21 n n N2 C9 50I sing 22 n y C7 N3 50I doub 23 n y N7 C13 50I doub 24 n n N5 C13 50I sing 25 n n N5 C12 50I sing 26 n n C13 N6 50I sing 27 n n C9 C12 50I sing 28 n n C9 C10 50I doub 29 n y N3 C10 50I sing 30 n y C12 O1 50I doub 31 n n C10 N4 50I sing 32 n n C4 H1 50I sing 33 n n C4 H2 50I sing 34 n n C5 H3 50I sing 35 n n C5 H4 50I sing 36 n n C6 H5 50I sing 37 n n C6 H6 50I sing 38 n n C1 H7 50I sing 39 n n C1 H8 50I sing 40 n n C2 H9 50I sing 41 n n C2 H10 50I sing 42 n n C16 H11 50I sing 43 n n C17 H12 50I sing 44 n n C18 H13 50I sing 45 n n C19 H14 50I sing 46 n n C20 H15 50I sing 47 n n N5 H16 50I sing 48 n n N7 H17 50I sing 49 n n N6 H18 50I sing 50 n n N6 H19 50I sing 51 n n N4 H20 50I sing 52 n n N4 H21 50I sing 53 n n C3 H22 50I sing 54 n n C3 H23 50I sing 55 n n # _atom_sites.entry_id 5ZA9 _atom_sites.fract_transf_matrix[1][1] 0.008298 _atom_sites.fract_transf_matrix[1][2] 0.004791 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 50I U 1 301 301 50I 50I . C 3 HOH U 1 401 401 HOH HOH . C 3 HOH U 2 402 402 HOH HOH . C 3 HOH U 3 403 403 HOH HOH . C 3 HOH U 4 404 404 HOH HOH . C 3 HOH U 5 405 405 HOH HOH . C 3 HOH U 6 406 406 HOH HOH . C 3 HOH U 7 407 407 HOH HOH . C 3 HOH U 8 408 408 HOH HOH . C 3 HOH U 9 409 409 HOH HOH . C 3 HOH U 10 410 410 HOH HOH . C 3 HOH U 11 411 411 HOH HOH . C 3 HOH U 12 412 412 HOH HOH . C 3 HOH U 13 413 413 HOH HOH . C 3 HOH U 14 414 414 HOH HOH . C 3 HOH U 15 415 415 HOH HOH . C 3 HOH U 16 416 416 HOH HOH . C 3 HOH U 17 417 417 HOH HOH . C 3 HOH U 18 418 418 HOH HOH . C 3 HOH U 19 419 419 HOH HOH . C 3 HOH U 20 420 420 HOH HOH . C 3 HOH U 21 421 421 HOH HOH . C 3 HOH U 22 422 422 HOH HOH . C 3 HOH U 23 423 423 HOH HOH . C 3 HOH U 24 424 424 HOH HOH . C 3 HOH U 25 425 425 HOH HOH . C 3 HOH U 26 426 426 HOH HOH . C 3 HOH U 27 427 427 HOH HOH . C 3 HOH U 28 428 428 HOH HOH . C 3 HOH U 29 429 429 HOH HOH . C 3 HOH U 30 430 430 HOH HOH . C 3 HOH U 31 431 431 HOH HOH . C 3 HOH U 32 432 432 HOH HOH . C 3 HOH U 33 433 433 HOH HOH . C 3 HOH U 34 434 434 HOH HOH . C 3 HOH U 35 435 435 HOH HOH . C 3 HOH U 36 436 436 HOH HOH . C 3 HOH U 37 437 437 HOH HOH . C 3 HOH U 38 438 438 HOH HOH . C 3 HOH U 39 439 439 HOH HOH . C 3 HOH U 40 440 440 HOH HOH . C 3 HOH U 41 441 441 HOH HOH . C 3 HOH U 42 442 442 HOH HOH . C 3 HOH U 43 443 443 HOH HOH . C 3 HOH U 44 444 444 HOH HOH . C 3 HOH U 45 445 445 HOH HOH . C 3 HOH U 46 446 446 HOH HOH . C 3 HOH U 47 447 447 HOH HOH . C 3 HOH U 48 448 448 HOH HOH . C 3 HOH U 49 449 449 HOH HOH . C 3 HOH U 50 450 450 HOH HOH . C 3 HOH U 51 451 451 HOH HOH . C 3 HOH U 52 452 452 HOH HOH . C 3 HOH U 53 453 453 HOH HOH . C 3 HOH U 54 454 454 HOH HOH . C 3 HOH U 55 455 455 HOH HOH . C 3 HOH U 56 456 456 HOH HOH . C 3 HOH U 57 457 457 HOH HOH . C 3 HOH U 58 458 458 HOH HOH . C 3 HOH U 59 459 459 HOH HOH . C 3 HOH U 60 460 460 HOH HOH . C 3 HOH U 61 461 461 HOH HOH . C 3 HOH U 62 462 462 HOH HOH . C 3 HOH U 63 463 463 HOH HOH . C 3 HOH U 64 464 464 HOH HOH . C 3 HOH U 65 465 465 HOH HOH . C 3 HOH U 66 466 466 HOH HOH . C 3 HOH U 67 467 467 HOH HOH . C 3 HOH U 68 468 468 HOH HOH . C 3 HOH U 69 469 469 HOH HOH . C 3 HOH U 70 470 470 HOH HOH . C 3 HOH U 71 471 471 HOH HOH . C 3 HOH U 72 472 472 HOH HOH . C 3 HOH U 73 473 473 HOH HOH . C 3 HOH U 74 474 474 HOH HOH . C 3 HOH U 75 475 475 HOH HOH . C 3 HOH U 76 476 476 HOH HOH . C 3 HOH U 77 477 477 HOH HOH . C 3 HOH U 78 478 478 HOH HOH . C 3 HOH U 79 479 479 HOH HOH . C 3 HOH U 80 480 481 HOH HOH . C 3 HOH U 81 481 482 HOH HOH . C 3 HOH U 82 482 483 HOH HOH . C 3 HOH U 83 483 484 HOH HOH . C 3 HOH U 84 484 485 HOH HOH . C 3 HOH U 85 485 486 HOH HOH . C 3 HOH U 86 486 488 HOH HOH . C 3 HOH U 87 487 489 HOH HOH . C 3 HOH U 88 488 490 HOH HOH . C 3 HOH U 89 489 487 HOH HOH . C 3 HOH U 90 490 491 HOH HOH . C 3 HOH U 91 491 492 HOH HOH . C 3 HOH U 92 492 493 HOH HOH . C 3 HOH U 93 493 494 HOH HOH . C 3 HOH U 94 494 495 HOH HOH . C 3 HOH U 95 495 496 HOH HOH . C 3 HOH U 96 496 497 HOH HOH . C 3 HOH U 97 497 498 HOH HOH . C 3 HOH U 98 498 499 HOH HOH . C 3 HOH U 99 499 500 HOH HOH . C 3 HOH U 100 500 501 HOH HOH . C 3 HOH U 101 501 502 HOH HOH . C 3 HOH U 102 502 503 HOH HOH . C 3 HOH U 103 503 504 HOH HOH . C 3 HOH U 104 504 505 HOH HOH . C 3 HOH U 105 505 506 HOH HOH . C 3 HOH U 106 506 507 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 50I . . . B 2 24.276 14.487 -12.031 1 36.88 ? C4 50I 301 U 1 HETATM 2 C C5 50I . . . B 2 25.352 15.504 -12.402 1 34.81 ? C5 50I 301 U 1 HETATM 3 C C6 50I . . . B 2 26.739 13.444 -13.027 1 35.85 ? C6 50I 301 U 1 HETATM 4 C C11 50I . . . B 2 28.92 14.953 -14.096 1 30.85 ? C11 50I 301 U 1 HETATM 5 C C7 50I . . . B 2 27.768 15.398 -11.934 1 30.55 ? C7 50I 301 U 1 HETATM 6 C C10 50I . . . B 2 28.863 16.487 -10.178 1 27.7 ? C10 50I 301 U 1 HETATM 7 C C12 50I . . . B 2 31.234 17.246 -10.398 1 26.05 ? C12 50I 301 U 1 HETATM 8 N N3 50I . . . B 2 27.759 15.893 -10.678 1 28.63 ? N3 50I 301 U 1 HETATM 9 C C1 50I . . . B 2 25.865 13.414 -14.276 1 37.39 ? C1 50I 301 U 1 HETATM 10 C C2 50I . . . B 2 24.479 12.869 -13.951 1 38.2 ? C2 50I 301 U 1 HETATM 11 C C15 50I . . . B 2 28.868 14.714 -16.325 1 32.72 ? C15 50I 301 U 1 HETATM 12 C C16 50I . . . B 2 28.798 15.702 -15.282 1 31.05 ? C16 50I 301 U 1 HETATM 13 C C17 50I . . . B 2 29.122 12.318 -16.496 1 34.21 ? C17 50I 301 U 1 HETATM 14 C C18 50I . . . B 2 29.061 12.435 -17.882 1 34.77 ? C18 50I 301 U 1 HETATM 15 C C19 50I . . . B 2 28.904 13.686 -18.479 1 34.47 ? C19 50I 301 U 1 HETATM 16 C C20 50I . . . B 2 28.805 14.841 -17.706 1 33.46 ? C20 50I 301 U 1 HETATM 17 O O1 50I . . . B 2 31.438 17.209 -9.195 1 26.06 ? O1 50I 301 U 1 HETATM 18 N N5 50I . . . B 2 32.213 17.637 -11.398 1 24.55 ? N5 50I 301 U 1 HETATM 19 C C13 50I . . . B 2 33.392 17.832 -11.05 1 24.32 ? C13 50I 301 U 1 HETATM 20 N N7 50I . . . B 2 34.088 18.325 -11.923 1 24.76 ? N7 50I 301 U 1 HETATM 21 N N6 50I . . . B 2 33.963 17.503 -9.84 1 24.31 ? N6 50I 301 U 1 HETATM 22 C C9 50I . . . B 2 30.005 16.587 -10.953 1 26.61 ? C9 50I 301 U 1 HETATM 23 N N2 50I . . . B 2 30.014 16.092 -12.209 1 27.95 ? N2 50I 301 U 1 HETATM 24 N N4 50I . . . B 2 28.854 16.983 -8.918 1 27.46 ? N4 50I 301 U 1 HETATM 25 N N1 50I . . . B 2 26.621 14.784 -12.453 1 33.75 ? N1 50I 301 U 1 HETATM 26 C C3 50I . . . B 2 23.608 13.928 -13.283 1 38.05 ? C3 50I 301 U 1 HETATM 27 C C8 50I . . . B 2 28.91 15.499 -12.709 1 29.61 ? C8 50I 301 U 1 HETATM 28 C C14 50I . . . B 2 29.021 13.485 -15.755 1 33 ? C14 50I 301 U 1 HETATM 29 O O2 50I . . . B 2 29.053 13.621 -14.444 1 32.99 ? O2 50I 301 U 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #