data_5ZAH # _model_server_result.job_id emU0ad3uhSAydoQNk5_bGg _model_server_result.datetime_utc '2024-11-05 06:39:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5ZAH # _exptl.entry_id 5ZAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(2-methoxypyrimidin-5-yl)pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZAH _cell.length_a 120.434 _cell.length_b 120.434 _cell.length_c 42.227 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'C17 H23 N9 O2' _chem_comp.formula_weight 385.424 _chem_comp.id 30I _chem_comp.mon_nstd_flag . _chem_comp.name 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(2-methoxypyrimidin-5-yl)pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C4 30I sing 1 n n O1 C2 30I doub 2 n n N2 C1 30I doub 3 n n C4 C3 30I doub 4 n y C4 N5 30I sing 5 n y C2 C3 30I sing 6 n n C2 N3 30I sing 7 n n C1 N3 30I sing 8 n n C1 N1 30I sing 9 n n C3 N7 30I sing 10 n y N5 C5 30I doub 11 n y C11 N6 30I sing 12 n n C11 C10 30I sing 13 n n C5 N6 30I sing 14 n n C5 C12 30I sing 15 n y N7 C12 30I doub 16 n y N6 C6 30I sing 17 n n C12 C13 30I sing 18 n n C10 C9 30I sing 19 n n C9 C8 30I sing 20 n n C7 C6 30I sing 21 n n C7 C8 30I sing 22 n n C13 C16 30I doub 23 n y C13 C14 30I sing 24 n y C16 N9 30I sing 25 n y C14 N8 30I doub 26 n y N9 C15 30I doub 27 n y N8 C15 30I sing 28 n y C15 O2 30I sing 29 n n O2 C17 30I sing 30 n n C10 H1 30I sing 31 n n C10 H2 30I sing 32 n n N3 H3 30I sing 33 n n N2 H4 30I sing 34 n n N1 H5 30I sing 35 n n N1 H6 30I sing 36 n n C14 H7 30I sing 37 n n C16 H8 30I sing 38 n n C17 H9 30I sing 39 n n C17 H10 30I sing 40 n n C17 H11 30I sing 41 n n N4 H12 30I sing 42 n n N4 H13 30I sing 43 n n C11 H14 30I sing 44 n n C11 H15 30I sing 45 n n C9 H16 30I sing 46 n n C9 H17 30I sing 47 n n C8 H18 30I sing 48 n n C8 H19 30I sing 49 n n C7 H20 30I sing 50 n n C7 H21 30I sing 51 n n C6 H22 30I sing 52 n n C6 H23 30I sing 53 n n # _atom_sites.entry_id 5ZAH _atom_sites.fract_transf_matrix[1][1] 0.008303 _atom_sites.fract_transf_matrix[1][2] 0.004794 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 30I U 1 301 301 30I 30I . C 3 HOH U 1 401 401 HOH HOH . C 3 HOH U 2 402 402 HOH HOH . C 3 HOH U 3 403 403 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 30I . . . B 2 0.315 27.673 -0.979 1 100.55 ? C10 30I 301 U 1 HETATM 2 O O2 30I . . . B 2 -2.708 32.429 4.29 1 88.66 ? O2 30I 301 U 1 HETATM 3 O O1 30I . . . B 2 -1.121 35.065 -4.881 1 69.74 ? O1 30I 301 U 1 HETATM 4 C C2 30I . . . B 2 -1.07 35.004 -3.66 1 71.63 ? C2 30I 301 U 1 HETATM 5 N N3 30I . . . B 2 -1.222 36.046 -2.825 1 75.3 ? N3 30I 301 U 1 HETATM 6 C C1 30I . . . B 2 -1.459 37.334 -3.112 1 75.92 ? C1 30I 301 U 1 HETATM 7 N N2 30I . . . B 2 -1.573 37.788 -4.358 1 78.19 ? N2 30I 301 U 1 HETATM 8 N N1 30I . . . B 2 -1.566 38.133 -2.145 1 71.46 ? N1 30I 301 U 1 HETATM 9 C C3 30I . . . B 2 -0.737 33.699 -2.998 1 72.3 ? C3 30I 301 U 1 HETATM 10 N N7 30I . . . B 2 -1.033 33.542 -1.688 1 75.37 ? N7 30I 301 U 1 HETATM 11 C C12 30I . . . B 2 -0.742 32.416 -0.997 1 77.52 ? C12 30I 301 U 1 HETATM 12 C C13 30I . . . B 2 -1.207 32.419 0.43 1 81.96 ? C13 30I 301 U 1 HETATM 13 C C14 30I . . . B 2 -0.683 33.265 1.392 1 84.73 ? C14 30I 301 U 1 HETATM 14 C C16 30I . . . B 2 -2.282 31.602 0.821 1 80.23 ? C16 30I 301 U 1 HETATM 15 N N9 30I . . . B 2 -2.756 31.607 2.077 1 78.59 ? N9 30I 301 U 1 HETATM 16 C C15 30I . . . B 2 -2.215 32.429 3.004 1 83.93 ? C15 30I 301 U 1 HETATM 17 N N8 30I . . . B 2 -1.188 33.247 2.648 1 86.31 ? N8 30I 301 U 1 HETATM 18 C C17 30I . . . B 2 -1.909 32.074 5.424 1 90.51 ? C17 30I 301 U 1 HETATM 19 C C5 30I . . . B 2 -0.138 31.364 -1.69 1 77.68 ? C5 30I 301 U 1 HETATM 20 N N5 30I . . . B 2 0.171 31.522 -2.99 1 72.89 ? N5 30I 301 U 1 HETATM 21 C C4 30I . . . B 2 -0.112 32.656 -3.664 1 75.46 ? C4 30I 301 U 1 HETATM 22 N N4 30I . . . B 2 0.23 32.73 -4.975 1 81.28 ? N4 30I 301 U 1 HETATM 23 N N6 30I . . . B 2 0.293 30.163 -1.122 1 93.88 ? N6 30I 301 U 1 HETATM 24 C C11 30I . . . B 2 0.14 28.912 -1.875 1 98.19 ? C11 30I 301 U 1 HETATM 25 C C9 30I . . . B 2 1.778 27.298 -0.734 1 100.8 ? C9 30I 301 U 1 HETATM 26 C C8 30I . . . B 2 2.408 28.13 0.378 1 99.3 ? C8 30I 301 U 1 HETATM 27 C C7 30I . . . B 2 2.423 29.605 -0.007 1 98.6 ? C7 30I 301 U 1 HETATM 28 C C6 30I . . . B 2 1.044 30.251 0.154 1 98.6 ? C6 30I 301 U 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #