data_5ZAJ # _model_server_result.job_id UQXDfT9-HQW5xbA8fHnqqA _model_server_result.datetime_utc '2024-11-26 13:00:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zaj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5ZAJ # _exptl.entry_id 5ZAJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 415.45 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(2,4-dimethoxypyrimidin-5-yl)pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZAJ _cell.length_a 120.35 _cell.length_b 120.35 _cell.length_c 42.28 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZAJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'C18 H25 N9 O3' _chem_comp.formula_weight 415.45 _chem_comp.id 32I _chem_comp.mon_nstd_flag . _chem_comp.name 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(2,4-dimethoxypyrimidin-5-yl)pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C9 32I sing 1 n n O1 C11 32I doub 2 n n N5 C12 32I doub 3 n n C9 N9 32I doub 4 n y C9 C18 32I sing 5 n y C11 C18 32I sing 6 n n C11 N3 32I sing 7 n n N9 C7 32I sing 8 n y C18 N8 32I doub 9 n y C12 N3 32I sing 10 n n C12 N4 32I sing 11 n n C4 C5 32I sing 12 n n C4 C3 32I sing 13 n n C5 N1 32I sing 14 n n C7 N1 32I sing 15 n n C7 C8 32I doub 16 n y N8 C8 32I sing 17 n y C3 C2 32I sing 18 n n N1 C6 32I sing 19 n n C8 C10 32I sing 20 n n C2 C1 32I sing 21 n n C6 C1 32I sing 22 n n C10 C15 32I doub 23 n y C10 C13 32I sing 24 n y O3 C15 32I sing 25 n n O3 C17 32I sing 26 n n C15 N7 32I sing 27 n y C13 N6 32I doub 28 n y N6 C14 32I sing 29 n y N7 C14 32I doub 30 n y C14 O2 32I sing 31 n n O2 C16 32I sing 32 n n N3 H1 32I sing 33 n n N5 H2 32I sing 34 n n N4 H3 32I sing 35 n n N4 H4 32I sing 36 n n C13 H5 32I sing 37 n n C17 H6 32I sing 38 n n C17 H7 32I sing 39 n n C17 H8 32I sing 40 n n C16 H9 32I sing 41 n n C16 H10 32I sing 42 n n C16 H11 32I sing 43 n n N2 H12 32I sing 44 n n N2 H13 32I sing 45 n n C6 H14 32I sing 46 n n C6 H15 32I sing 47 n n C1 H16 32I sing 48 n n C1 H17 32I sing 49 n n C5 H18 32I sing 50 n n C5 H19 32I sing 51 n n C4 H20 32I sing 52 n n C4 H21 32I sing 53 n n C3 H22 32I sing 54 n n C3 H23 32I sing 55 n n C2 H24 32I sing 56 n n C2 H25 32I sing 57 n n # _atom_sites.entry_id 5ZAJ _atom_sites.fract_transf_matrix[1][1] 0.008309 _atom_sites.fract_transf_matrix[1][2] 0.004797 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023652 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 32I U 1 301 301 32I 32I . C 3 HOH U 1 401 401 HOH HOH . C 3 HOH U 2 402 402 HOH HOH . C 3 HOH U 3 403 403 HOH HOH . C 3 HOH U 4 404 404 HOH HOH . C 3 HOH U 5 405 405 HOH HOH . C 3 HOH U 6 406 406 HOH HOH . C 3 HOH U 7 407 407 HOH HOH . C 3 HOH U 8 408 408 HOH HOH . C 3 HOH U 9 409 409 HOH HOH . C 3 HOH U 10 410 410 HOH HOH . C 3 HOH U 11 411 411 HOH HOH . C 3 HOH U 12 412 412 HOH HOH . C 3 HOH U 13 413 413 HOH HOH . C 3 HOH U 14 414 414 HOH HOH . C 3 HOH U 15 415 415 HOH HOH . C 3 HOH U 16 416 416 HOH HOH . C 3 HOH U 17 417 417 HOH HOH . C 3 HOH U 18 418 418 HOH HOH . C 3 HOH U 19 419 419 HOH HOH . C 3 HOH U 20 420 420 HOH HOH . C 3 HOH U 21 421 421 HOH HOH . C 3 HOH U 22 422 422 HOH HOH . C 3 HOH U 23 423 423 HOH HOH . C 3 HOH U 24 424 424 HOH HOH . C 3 HOH U 25 425 425 HOH HOH . C 3 HOH U 26 426 426 HOH HOH . C 3 HOH U 27 427 427 HOH HOH . C 3 HOH U 28 428 428 HOH HOH . C 3 HOH U 29 429 429 HOH HOH . C 3 HOH U 30 430 430 HOH HOH . C 3 HOH U 31 431 431 HOH HOH . C 3 HOH U 32 432 432 HOH HOH . C 3 HOH U 33 433 433 HOH HOH . C 3 HOH U 34 434 434 HOH HOH . C 3 HOH U 35 435 435 HOH HOH . C 3 HOH U 36 436 436 HOH HOH . C 3 HOH U 37 437 437 HOH HOH . C 3 HOH U 38 438 438 HOH HOH . C 3 HOH U 39 439 439 HOH HOH . C 3 HOH U 40 440 440 HOH HOH . C 3 HOH U 41 441 441 HOH HOH . C 3 HOH U 42 442 442 HOH HOH . C 3 HOH U 43 443 443 HOH HOH . C 3 HOH U 44 444 444 HOH HOH . C 3 HOH U 45 445 445 HOH HOH . C 3 HOH U 46 446 446 HOH HOH . C 3 HOH U 47 447 447 HOH HOH . C 3 HOH U 48 448 448 HOH HOH . C 3 HOH U 49 449 449 HOH HOH . C 3 HOH U 50 450 450 HOH HOH . C 3 HOH U 51 451 451 HOH HOH . C 3 HOH U 52 452 452 HOH HOH . C 3 HOH U 53 453 453 HOH HOH . C 3 HOH U 54 454 454 HOH HOH . C 3 HOH U 55 455 455 HOH HOH . C 3 HOH U 56 456 456 HOH HOH . C 3 HOH U 57 457 457 HOH HOH . C 3 HOH U 58 458 458 HOH HOH . C 3 HOH U 59 459 459 HOH HOH . C 3 HOH U 60 460 460 HOH HOH . C 3 HOH U 61 461 461 HOH HOH . C 3 HOH U 62 462 462 HOH HOH . C 3 HOH U 63 463 463 HOH HOH . C 3 HOH U 64 464 464 HOH HOH . C 3 HOH U 65 465 465 HOH HOH . C 3 HOH U 66 466 466 HOH HOH . C 3 HOH U 67 467 467 HOH HOH . C 3 HOH U 68 468 468 HOH HOH . C 3 HOH U 69 469 469 HOH HOH . C 3 HOH U 70 470 470 HOH HOH . C 3 HOH U 71 471 471 HOH HOH . C 3 HOH U 72 472 472 HOH HOH . C 3 HOH U 73 473 474 HOH HOH . C 3 HOH U 74 474 475 HOH HOH . C 3 HOH U 75 475 476 HOH HOH . C 3 HOH U 76 476 477 HOH HOH . C 3 HOH U 77 477 478 HOH HOH . C 3 HOH U 78 478 479 HOH HOH . C 3 HOH U 79 479 480 HOH HOH . C 3 HOH U 80 480 481 HOH HOH . C 3 HOH U 81 481 482 HOH HOH . C 3 HOH U 82 482 483 HOH HOH . C 3 HOH U 83 483 484 HOH HOH . C 3 HOH U 84 484 485 HOH HOH . C 3 HOH U 85 485 486 HOH HOH . C 3 HOH U 86 486 487 HOH HOH . C 3 HOH U 87 487 488 HOH HOH . C 3 HOH U 88 488 489 HOH HOH . C 3 HOH U 89 489 490 HOH HOH . C 3 HOH U 90 490 491 HOH HOH . C 3 HOH U 91 491 492 HOH HOH . C 3 HOH U 92 492 493 HOH HOH . C 3 HOH U 93 493 494 HOH HOH . C 3 HOH U 94 494 495 HOH HOH . C 3 HOH U 95 495 496 HOH HOH . C 3 HOH U 96 496 497 HOH HOH . C 3 HOH U 97 497 498 HOH HOH . C 3 HOH U 98 498 499 HOH HOH . C 3 HOH U 99 499 500 HOH HOH . C 3 HOH U 100 500 501 HOH HOH . C 3 HOH U 101 501 502 HOH HOH . C 3 HOH U 102 502 503 HOH HOH . C 3 HOH U 103 503 504 HOH HOH . C 3 HOH U 104 504 505 HOH HOH . C 3 HOH U 105 505 506 HOH HOH . C 3 HOH U 106 506 507 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 32I . . . B 2 -26.053 -15.073 -1.488 1 32 ? N1 32I 301 U 1 HETATM 2 O O1 32I . . . B 2 -30.282 -18.653 -4.682 1 24.1 ? O1 32I 301 U 1 HETATM 3 C C11 32I . . . B 2 -30.167 -18.481 -3.476 1 24.55 ? C11 32I 301 U 1 HETATM 4 N N3 32I . . . B 2 -30.993 -18.987 -2.548 1 23.09 ? N3 32I 301 U 1 HETATM 5 C C12 32I . . . B 2 -31.942 -19.896 -2.75 1 22.77 ? C12 32I 301 U 1 HETATM 6 N N5 32I . . . B 2 -32.142 -20.375 -3.896 1 22.75 ? N5 32I 301 U 1 HETATM 7 N N4 32I . . . B 2 -32.685 -20.263 -1.714 1 23.12 ? N4 32I 301 U 1 HETATM 8 C C18 32I . . . B 2 -29.078 -17.598 -2.963 1 25.59 ? C18 32I 301 U 1 HETATM 9 N N8 32I . . . B 2 -28.893 -17.528 -1.626 1 27.52 ? N8 32I 301 U 1 HETATM 10 C C8 32I . . . B 2 -27.936 -16.749 -1.068 1 29.49 ? C8 32I 301 U 1 HETATM 11 C C10 32I . . . B 2 -27.945 -16.853 0.421 1 30.73 ? C10 32I 301 U 1 HETATM 12 C C13 32I . . . B 2 -28.88 -16.093 1.132 1 32.61 ? C13 32I 301 U 1 HETATM 13 C C15 32I . . . B 2 -27.087 -17.692 1.131 1 32.08 ? C15 32I 301 U 1 HETATM 14 O O3 32I . . . B 2 -26.148 -18.471 0.505 1 32.25 ? O3 32I 301 U 1 HETATM 15 C C17 32I . . . B 2 -25.153 -19.18 1.253 1 32.2 ? C17 32I 301 U 1 HETATM 16 N N7 32I . . . B 2 -27.178 -17.731 2.482 1 33.11 ? N7 32I 301 U 1 HETATM 17 C C14 32I . . . B 2 -28.081 -16.985 3.156 1 34.16 ? C14 32I 301 U 1 HETATM 18 N N6 32I . . . B 2 -28.934 -16.167 2.479 1 33.42 ? N6 32I 301 U 1 HETATM 19 O O2 32I . . . B 2 -28.095 -17.082 4.523 1 35.8 ? O2 32I 301 U 1 HETATM 20 C C16 32I . . . B 2 -29.254 -17.404 5.288 1 36.68 ? C16 32I 301 U 1 HETATM 21 C C9 32I . . . B 2 -28.275 -16.835 -3.798 1 26.29 ? C9 32I 301 U 1 HETATM 22 N N2 32I . . . B 2 -28.443 -16.871 -5.139 1 25.88 ? N2 32I 301 U 1 HETATM 23 N N9 32I . . . B 2 -27.322 -16.047 -3.25 1 27.56 ? N9 32I 301 U 1 HETATM 24 C C7 32I . . . B 2 -27.102 -15.956 -1.896 1 29.65 ? C7 32I 301 U 1 HETATM 25 C C6 32I . . . B 2 -25.665 -14.837 -0.081 1 33.87 ? C6 32I 301 U 1 HETATM 26 C C1 32I . . . B 2 -25.202 -13.401 0.189 1 35.04 ? C1 32I 301 U 1 HETATM 27 C C5 32I . . . B 2 -25.291 -14.348 -2.523 1 33.26 ? C5 32I 301 U 1 HETATM 28 C C4 32I . . . B 2 -25.749 -12.888 -2.626 1 34.42 ? C4 32I 301 U 1 HETATM 29 C C3 32I . . . B 2 -26.793 -12.429 -1.602 1 35.11 ? C3 32I 301 U 1 HETATM 30 C C2 32I . . . B 2 -26.262 -12.361 -0.17 1 35.26 ? C2 32I 301 U 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 631 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 30 #