data_5ZB2 # _model_server_result.job_id JuQK19WrmeFcrSI-5cNaxA _model_server_result.datetime_utc '2024-12-11 21:49:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":605}' # _entry.id 5ZB2 # _exptl.entry_id 5ZB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZB2 _cell.length_a 110.921 _cell.length_b 67.764 _cell.length_c 69.015 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 67.764 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 K OAG 9FO . A 9FO 609 1_555 L NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? metalc ? metalc2 K OAV 9FO . A 9FO 609 1_555 L NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc3 K OAY 9FO . A 9FO 609 1_555 L NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.063 ? metalc ? metalc4 K OBW 9FO . A 9FO 609 1_555 L NA NA . A NA 610 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc5 K OBZ 9FO . A 9FO 609 1_555 L NA NA . A NA 610 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc6 L NA NA . A NA 610 1_555 M O HOH . A HOH 770 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 271 n n C1 C2 GOL sing 272 n n C1 H11 GOL sing 273 n n C1 H12 GOL sing 274 n n O1 HO1 GOL sing 275 n n C2 O2 GOL sing 276 n n C2 C3 GOL sing 277 n n C2 H2 GOL sing 278 n n O2 HO2 GOL sing 279 n n C3 O3 GOL sing 280 n n C3 H31 GOL sing 281 n n C3 H32 GOL sing 282 n n O3 HO3 GOL sing 283 n n # _atom_sites.entry_id 5ZB2 _atom_sites.fract_transf_matrix[1][1] 0.009015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 601 1 GOL GOL . D 3 GOL A 1 602 2 GOL GOL . E 3 GOL A 1 603 3 GOL GOL . F 3 GOL A 1 604 4 GOL GOL . G 3 GOL A 1 605 5 GOL GOL . H 4 PG0 A 1 606 1 PG0 PG0 . I 5 P33 A 1 607 1 P33 P33 . J 6 P6G A 1 608 1 P6G P6G . K 7 9FO A 1 609 1 9FO DRG . L 8 NA A 1 610 1 NA NA . M 9 HOH A 1 701 149 HOH HOH . M 9 HOH A 2 702 95 HOH HOH . M 9 HOH A 3 703 214 HOH HOH . M 9 HOH A 4 704 51 HOH HOH . M 9 HOH A 5 705 168 HOH HOH . M 9 HOH A 6 706 227 HOH HOH . M 9 HOH A 7 707 171 HOH HOH . M 9 HOH A 8 708 250 HOH HOH . M 9 HOH A 9 709 44 HOH HOH . M 9 HOH A 10 710 113 HOH HOH . M 9 HOH A 11 711 174 HOH HOH . M 9 HOH A 12 712 172 HOH HOH . M 9 HOH A 13 713 228 HOH HOH . M 9 HOH A 14 714 221 HOH HOH . M 9 HOH A 15 715 45 HOH HOH . M 9 HOH A 16 716 58 HOH HOH . M 9 HOH A 17 717 2 HOH HOH . M 9 HOH A 18 718 22 HOH HOH . M 9 HOH A 19 719 190 HOH HOH . M 9 HOH A 20 720 74 HOH HOH . M 9 HOH A 21 721 54 HOH HOH . M 9 HOH A 22 722 59 HOH HOH . M 9 HOH A 23 723 6 HOH HOH . M 9 HOH A 24 724 238 HOH HOH . M 9 HOH A 25 725 17 HOH HOH . M 9 HOH A 26 726 20 HOH HOH . M 9 HOH A 27 727 180 HOH HOH . M 9 HOH A 28 728 86 HOH HOH . M 9 HOH A 29 729 35 HOH HOH . M 9 HOH A 30 730 38 HOH HOH . M 9 HOH A 31 731 19 HOH HOH . M 9 HOH A 32 732 14 HOH HOH . M 9 HOH A 33 733 94 HOH HOH . M 9 HOH A 34 734 156 HOH HOH . M 9 HOH A 35 735 163 HOH HOH . M 9 HOH A 36 736 4 HOH HOH . M 9 HOH A 37 737 12 HOH HOH . M 9 HOH A 38 738 93 HOH HOH . M 9 HOH A 39 739 34 HOH HOH . M 9 HOH A 40 740 147 HOH HOH . M 9 HOH A 41 741 219 HOH HOH . M 9 HOH A 42 742 215 HOH HOH . M 9 HOH A 43 743 3 HOH HOH . M 9 HOH A 44 744 11 HOH HOH . M 9 HOH A 45 745 8 HOH HOH . M 9 HOH A 46 746 5 HOH HOH . M 9 HOH A 47 747 72 HOH HOH . M 9 HOH A 48 748 36 HOH HOH . M 9 HOH A 49 749 31 HOH HOH . M 9 HOH A 50 750 39 HOH HOH . M 9 HOH A 51 751 42 HOH HOH . M 9 HOH A 52 752 107 HOH HOH . M 9 HOH A 53 753 133 HOH HOH . M 9 HOH A 54 754 40 HOH HOH . M 9 HOH A 55 755 1 HOH HOH . M 9 HOH A 56 756 26 HOH HOH . M 9 HOH A 57 757 91 HOH HOH . M 9 HOH A 58 758 92 HOH HOH . M 9 HOH A 59 759 85 HOH HOH . M 9 HOH A 60 760 24 HOH HOH . M 9 HOH A 61 761 7 HOH HOH . M 9 HOH A 62 762 13 HOH HOH . M 9 HOH A 63 763 49 HOH HOH . M 9 HOH A 64 764 218 HOH HOH . M 9 HOH A 65 765 154 HOH HOH . M 9 HOH A 66 766 48 HOH HOH . M 9 HOH A 67 767 252 HOH HOH . M 9 HOH A 68 768 78 HOH HOH . M 9 HOH A 69 769 108 HOH HOH . M 9 HOH A 70 770 55 HOH HOH . M 9 HOH A 71 771 47 HOH HOH . M 9 HOH A 72 772 216 HOH HOH . M 9 HOH A 73 773 16 HOH HOH . M 9 HOH A 74 774 46 HOH HOH . M 9 HOH A 75 775 15 HOH HOH . M 9 HOH A 76 776 223 HOH HOH . M 9 HOH A 77 777 41 HOH HOH . M 9 HOH A 78 778 153 HOH HOH . M 9 HOH A 79 779 164 HOH HOH . M 9 HOH A 80 780 23 HOH HOH . M 9 HOH A 81 781 71 HOH HOH . M 9 HOH A 82 782 30 HOH HOH . M 9 HOH A 83 783 29 HOH HOH . M 9 HOH A 84 784 226 HOH HOH . M 9 HOH A 85 785 9 HOH HOH . M 9 HOH A 86 786 28 HOH HOH . M 9 HOH A 87 787 33 HOH HOH . M 9 HOH A 88 788 89 HOH HOH . M 9 HOH A 89 789 37 HOH HOH . M 9 HOH A 90 790 67 HOH HOH . M 9 HOH A 91 791 25 HOH HOH . M 9 HOH A 92 792 65 HOH HOH . M 9 HOH A 93 793 18 HOH HOH . M 9 HOH A 94 794 173 HOH HOH . M 9 HOH A 95 795 32 HOH HOH . M 9 HOH A 96 796 10 HOH HOH . M 9 HOH A 97 797 50 HOH HOH . M 9 HOH A 98 798 165 HOH HOH . M 9 HOH A 99 799 204 HOH HOH . M 9 HOH A 100 800 132 HOH HOH . M 9 HOH A 101 801 83 HOH HOH . M 9 HOH A 102 802 212 HOH HOH . M 9 HOH A 103 803 98 HOH HOH . M 9 HOH A 104 804 134 HOH HOH . M 9 HOH A 105 805 246 HOH HOH . M 9 HOH A 106 806 122 HOH HOH . M 9 HOH A 107 807 211 HOH HOH . M 9 HOH A 108 808 70 HOH HOH . M 9 HOH A 109 809 60 HOH HOH . M 9 HOH A 110 810 81 HOH HOH . M 9 HOH A 111 811 135 HOH HOH . M 9 HOH A 112 812 76 HOH HOH . M 9 HOH A 113 813 213 HOH HOH . M 9 HOH A 114 814 155 HOH HOH . M 9 HOH A 115 815 146 HOH HOH . M 9 HOH A 116 816 21 HOH HOH . M 9 HOH A 117 817 105 HOH HOH . M 9 HOH A 118 818 128 HOH HOH . M 9 HOH A 119 819 64 HOH HOH . M 9 HOH A 120 820 182 HOH HOH . M 9 HOH A 121 821 123 HOH HOH . M 9 HOH A 122 822 53 HOH HOH . M 9 HOH A 123 823 151 HOH HOH . M 9 HOH A 124 824 202 HOH HOH . M 9 HOH A 125 825 43 HOH HOH . M 9 HOH A 126 826 68 HOH HOH . M 9 HOH A 127 827 100 HOH HOH . M 9 HOH A 128 828 66 HOH HOH . M 9 HOH A 129 829 125 HOH HOH . M 9 HOH A 130 830 167 HOH HOH . M 9 HOH A 131 831 177 HOH HOH . M 9 HOH A 132 832 79 HOH HOH . M 9 HOH A 133 833 52 HOH HOH . M 9 HOH A 134 834 56 HOH HOH . M 9 HOH A 135 835 205 HOH HOH . M 9 HOH A 136 836 195 HOH HOH . M 9 HOH A 137 837 209 HOH HOH . M 9 HOH A 138 838 191 HOH HOH . M 9 HOH A 139 839 63 HOH HOH . M 9 HOH A 140 840 217 HOH HOH . M 9 HOH A 141 841 251 HOH HOH . M 9 HOH A 142 842 118 HOH HOH . M 9 HOH A 143 843 144 HOH HOH . M 9 HOH A 144 844 75 HOH HOH . M 9 HOH A 145 845 139 HOH HOH . M 9 HOH A 146 846 130 HOH HOH . M 9 HOH A 147 847 196 HOH HOH . M 9 HOH A 148 848 126 HOH HOH . M 9 HOH A 149 849 200 HOH HOH . M 9 HOH A 150 850 210 HOH HOH . M 9 HOH A 151 851 90 HOH HOH . M 9 HOH A 152 852 111 HOH HOH . M 9 HOH A 153 853 237 HOH HOH . M 9 HOH A 154 854 179 HOH HOH . M 9 HOH A 155 855 137 HOH HOH . M 9 HOH A 156 856 162 HOH HOH . M 9 HOH A 157 857 96 HOH HOH . M 9 HOH A 158 858 136 HOH HOH . M 9 HOH A 159 859 239 HOH HOH . M 9 HOH A 160 860 101 HOH HOH . M 9 HOH A 161 861 161 HOH HOH . M 9 HOH A 162 862 197 HOH HOH . M 9 HOH A 163 863 150 HOH HOH . M 9 HOH A 164 864 103 HOH HOH . M 9 HOH A 165 865 240 HOH HOH . M 9 HOH A 166 866 160 HOH HOH . M 9 HOH A 167 867 187 HOH HOH . M 9 HOH A 168 868 57 HOH HOH . M 9 HOH A 169 869 199 HOH HOH . M 9 HOH A 170 870 242 HOH HOH . M 9 HOH A 171 871 178 HOH HOH . M 9 HOH A 172 872 181 HOH HOH . M 9 HOH A 173 873 170 HOH HOH . M 9 HOH A 174 874 148 HOH HOH . M 9 HOH A 175 875 249 HOH HOH . M 9 HOH A 176 876 62 HOH HOH . M 9 HOH A 177 877 61 HOH HOH . M 9 HOH A 178 878 145 HOH HOH . M 9 HOH A 179 879 166 HOH HOH . M 9 HOH A 180 880 176 HOH HOH . M 9 HOH A 181 881 104 HOH HOH . M 9 HOH A 182 882 129 HOH HOH . M 9 HOH A 183 883 201 HOH HOH . M 9 HOH A 184 884 99 HOH HOH . M 9 HOH A 185 885 97 HOH HOH . M 9 HOH A 186 886 112 HOH HOH . M 9 HOH A 187 887 231 HOH HOH . M 9 HOH A 188 888 220 HOH HOH . M 9 HOH A 189 889 247 HOH HOH . M 9 HOH A 190 890 207 HOH HOH . M 9 HOH A 191 891 143 HOH HOH . M 9 HOH A 192 892 115 HOH HOH . M 9 HOH A 193 893 185 HOH HOH . M 9 HOH A 194 894 169 HOH HOH . M 9 HOH A 195 895 152 HOH HOH . M 9 HOH A 196 896 124 HOH HOH . M 9 HOH A 197 897 224 HOH HOH . M 9 HOH A 198 898 27 HOH HOH . M 9 HOH A 199 899 248 HOH HOH . M 9 HOH A 200 900 157 HOH HOH . M 9 HOH A 201 901 175 HOH HOH . M 9 HOH A 202 902 230 HOH HOH . M 9 HOH A 203 903 241 HOH HOH . M 9 HOH A 204 904 159 HOH HOH . M 9 HOH A 205 905 206 HOH HOH . M 9 HOH A 206 906 84 HOH HOH . M 9 HOH A 207 907 232 HOH HOH . M 9 HOH A 208 908 114 HOH HOH . M 9 HOH A 209 909 102 HOH HOH . M 9 HOH A 210 910 158 HOH HOH . M 9 HOH A 211 911 198 HOH HOH . M 9 HOH A 212 912 127 HOH HOH . M 9 HOH A 213 913 142 HOH HOH . M 9 HOH A 214 914 203 HOH HOH . M 9 HOH A 215 915 225 HOH HOH . M 9 HOH A 216 916 229 HOH HOH . M 9 HOH A 217 917 131 HOH HOH . M 9 HOH A 218 918 140 HOH HOH . M 9 HOH A 219 919 208 HOH HOH . M 9 HOH A 220 920 106 HOH HOH . M 9 HOH A 221 921 243 HOH HOH . M 9 HOH A 222 922 141 HOH HOH . M 9 HOH A 223 923 245 HOH HOH . M 9 HOH A 224 924 244 HOH HOH . N 9 HOH B 1 101 188 HOH HOH . N 9 HOH B 2 102 183 HOH HOH . N 9 HOH B 3 103 189 HOH HOH . N 9 HOH B 4 104 234 HOH HOH . N 9 HOH B 5 105 193 HOH HOH . N 9 HOH B 6 106 87 HOH HOH . N 9 HOH B 7 107 236 HOH HOH . N 9 HOH B 8 108 186 HOH HOH . N 9 HOH B 9 109 194 HOH HOH . N 9 HOH B 10 110 184 HOH HOH . N 9 HOH B 11 111 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 23.831 8.584 85.862 1 64.18 ? C1 GOL 605 A 1 HETATM 2 O O1 GOL . . . G 3 24.874 7.824 85.291 1 64.56 ? O1 GOL 605 A 1 HETATM 3 C C2 GOL . . . G 3 24.424 9.731 86.678 1 76.8 ? C2 GOL 605 A 1 HETATM 4 O O2 GOL . . . G 3 23.618 10.02 87.801 1 58.64 ? O2 GOL 605 A 1 HETATM 5 C C3 GOL . . . G 3 25.836 9.369 87.127 1 68.41 ? C3 GOL 605 A 1 HETATM 6 O O3 GOL . . . G 3 26.77 9.71 86.126 1 68.14 ? O3 GOL 605 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 58 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #