data_5ZBJ # _model_server_result.job_id KJBPAL7TyGZnqQDQZbxL6Q _model_server_result.datetime_utc '2024-10-28 02:24:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5ZBJ # _exptl.entry_id 5ZBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZBJ _cell.length_a 64.931 _cell.length_b 97.917 _cell.length_c 71.665 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 35.8325 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 5ZBJ _atom_sites.fract_transf_matrix[1][1] 0.015401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 2 GOL A 1 302 3 GOL GOL . D 2 GOL A 1 303 4 GOL GOL . E 3 PO4 A 1 304 1 PO4 PO4 . F 4 IMD A 1 305 1 IMD IMD . G 5 EDO A 1 306 1 EDO EDO . H 6 HOH A 1 401 92 HOH HOH . H 6 HOH A 2 402 42 HOH HOH . H 6 HOH A 3 403 95 HOH HOH . H 6 HOH A 4 404 54 HOH HOH . H 6 HOH A 5 405 59 HOH HOH . H 6 HOH A 6 406 64 HOH HOH . H 6 HOH A 7 407 22 HOH HOH . H 6 HOH A 8 408 65 HOH HOH . H 6 HOH A 9 409 79 HOH HOH . H 6 HOH A 10 410 15 HOH HOH . H 6 HOH A 11 411 66 HOH HOH . H 6 HOH A 12 412 55 HOH HOH . H 6 HOH A 13 413 2 HOH HOH . H 6 HOH A 14 414 11 HOH HOH . H 6 HOH A 15 415 45 HOH HOH . H 6 HOH A 16 416 61 HOH HOH . H 6 HOH A 17 417 48 HOH HOH . H 6 HOH A 18 418 62 HOH HOH . H 6 HOH A 19 419 69 HOH HOH . H 6 HOH A 20 420 74 HOH HOH . H 6 HOH A 21 421 96 HOH HOH . H 6 HOH A 22 422 3 HOH HOH . H 6 HOH A 23 423 82 HOH HOH . H 6 HOH A 24 424 56 HOH HOH . H 6 HOH A 25 425 60 HOH HOH . H 6 HOH A 26 426 78 HOH HOH . H 6 HOH A 27 427 17 HOH HOH . H 6 HOH A 28 428 93 HOH HOH . H 6 HOH A 29 429 43 HOH HOH . H 6 HOH A 30 430 53 HOH HOH . H 6 HOH A 31 431 1 HOH HOH . H 6 HOH A 32 432 13 HOH HOH . H 6 HOH A 33 433 23 HOH HOH . H 6 HOH A 34 434 5 HOH HOH . H 6 HOH A 35 435 7 HOH HOH . H 6 HOH A 36 436 33 HOH HOH . H 6 HOH A 37 437 36 HOH HOH . H 6 HOH A 38 438 47 HOH HOH . H 6 HOH A 39 439 21 HOH HOH . H 6 HOH A 40 440 35 HOH HOH . H 6 HOH A 41 441 57 HOH HOH . H 6 HOH A 42 442 67 HOH HOH . H 6 HOH A 43 443 38 HOH HOH . H 6 HOH A 44 444 37 HOH HOH . H 6 HOH A 45 445 18 HOH HOH . H 6 HOH A 46 446 34 HOH HOH . H 6 HOH A 47 447 31 HOH HOH . H 6 HOH A 48 448 105 HOH HOH . H 6 HOH A 49 449 40 HOH HOH . H 6 HOH A 50 450 30 HOH HOH . H 6 HOH A 51 451 4 HOH HOH . H 6 HOH A 52 452 39 HOH HOH . H 6 HOH A 53 453 70 HOH HOH . H 6 HOH A 54 454 97 HOH HOH . H 6 HOH A 55 455 12 HOH HOH . H 6 HOH A 56 456 76 HOH HOH . H 6 HOH A 57 457 9 HOH HOH . H 6 HOH A 58 458 46 HOH HOH . H 6 HOH A 59 459 28 HOH HOH . H 6 HOH A 60 460 29 HOH HOH . H 6 HOH A 61 461 8 HOH HOH . H 6 HOH A 62 462 52 HOH HOH . H 6 HOH A 63 463 32 HOH HOH . H 6 HOH A 64 464 100 HOH HOH . H 6 HOH A 65 465 86 HOH HOH . H 6 HOH A 66 466 68 HOH HOH . H 6 HOH A 67 467 81 HOH HOH . H 6 HOH A 68 468 58 HOH HOH . H 6 HOH A 69 469 10 HOH HOH . H 6 HOH A 70 470 16 HOH HOH . H 6 HOH A 71 471 106 HOH HOH . H 6 HOH A 72 472 20 HOH HOH . H 6 HOH A 73 473 6 HOH HOH . H 6 HOH A 74 474 14 HOH HOH . H 6 HOH A 75 475 50 HOH HOH . H 6 HOH A 76 476 108 HOH HOH . H 6 HOH A 77 477 26 HOH HOH . H 6 HOH A 78 478 24 HOH HOH . H 6 HOH A 79 479 104 HOH HOH . H 6 HOH A 80 480 80 HOH HOH . H 6 HOH A 81 481 103 HOH HOH . H 6 HOH A 82 482 83 HOH HOH . H 6 HOH A 83 483 25 HOH HOH . H 6 HOH A 84 484 98 HOH HOH . H 6 HOH A 85 485 44 HOH HOH . H 6 HOH A 86 486 71 HOH HOH . H 6 HOH A 87 487 19 HOH HOH . H 6 HOH A 88 488 27 HOH HOH . H 6 HOH A 89 489 77 HOH HOH . H 6 HOH A 90 490 84 HOH HOH . H 6 HOH A 91 491 85 HOH HOH . H 6 HOH A 92 492 41 HOH HOH . H 6 HOH A 93 493 87 HOH HOH . H 6 HOH A 94 494 101 HOH HOH . H 6 HOH A 95 495 99 HOH HOH . H 6 HOH A 96 496 49 HOH HOH . H 6 HOH A 97 497 102 HOH HOH . H 6 HOH A 98 498 94 HOH HOH . H 6 HOH A 99 499 107 HOH HOH . H 6 HOH A 100 500 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 16.101 23.063 26.312 1 20 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 2 14.885 22.322 26.002 1 20 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 2 16.818 22.278 27.402 1 20 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 2 16.023 22.063 28.562 1 20 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 2 18.159 22.845 27.812 1 20 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 2 17.959 23.942 28.607 1 20 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 6 #