data_5ZBY # _model_server_result.job_id GLCt6bYXylQaBAkD0_bA6Q _model_server_result.datetime_utc '2024-10-19 03:50:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zby # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 5ZBY # _exptl.entry_id 5ZBY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZBY _cell.length_a 50.377 _cell.length_b 50.377 _cell.length_c 146.167 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 5ZBY _atom_sites.fract_transf_matrix[1][1] 0.01985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 200 200 EPE EPE . C 3 HOH A 1 301 41 HOH HOH . C 3 HOH A 2 302 55 HOH HOH . C 3 HOH A 3 303 93 HOH HOH . C 3 HOH A 4 304 29 HOH HOH . C 3 HOH A 5 305 32 HOH HOH . C 3 HOH A 6 306 104 HOH HOH . C 3 HOH A 7 307 4 HOH HOH . C 3 HOH A 8 308 22 HOH HOH . C 3 HOH A 9 309 108 HOH HOH . C 3 HOH A 10 310 49 HOH HOH . C 3 HOH A 11 311 40 HOH HOH . C 3 HOH A 12 312 5 HOH HOH . C 3 HOH A 13 313 70 HOH HOH . C 3 HOH A 14 314 3 HOH HOH . C 3 HOH A 15 315 1 HOH HOH . C 3 HOH A 16 316 12 HOH HOH . C 3 HOH A 17 317 113 HOH HOH . C 3 HOH A 18 318 2 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 21 HOH HOH . C 3 HOH A 21 321 6 HOH HOH . C 3 HOH A 22 322 9 HOH HOH . C 3 HOH A 23 323 33 HOH HOH . C 3 HOH A 24 324 99 HOH HOH . C 3 HOH A 25 325 43 HOH HOH . C 3 HOH A 26 326 59 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 77 HOH HOH . C 3 HOH A 29 329 60 HOH HOH . C 3 HOH A 30 330 7 HOH HOH . C 3 HOH A 31 331 51 HOH HOH . C 3 HOH A 32 332 17 HOH HOH . C 3 HOH A 33 333 35 HOH HOH . C 3 HOH A 34 334 102 HOH HOH . C 3 HOH A 35 335 97 HOH HOH . C 3 HOH A 36 336 73 HOH HOH . C 3 HOH A 37 337 85 HOH HOH . C 3 HOH A 38 338 84 HOH HOH . C 3 HOH A 39 339 103 HOH HOH . C 3 HOH A 40 340 80 HOH HOH . C 3 HOH A 41 341 8 HOH HOH . C 3 HOH A 42 342 45 HOH HOH . C 3 HOH A 43 343 112 HOH HOH . C 3 HOH A 44 344 101 HOH HOH . C 3 HOH A 45 345 20 HOH HOH . C 3 HOH A 46 346 11 HOH HOH . C 3 HOH A 47 347 109 HOH HOH . C 3 HOH A 48 348 74 HOH HOH . C 3 HOH A 49 349 25 HOH HOH . C 3 HOH A 50 350 53 HOH HOH . C 3 HOH A 51 351 47 HOH HOH . C 3 HOH A 52 352 46 HOH HOH . C 3 HOH A 53 353 23 HOH HOH . C 3 HOH A 54 354 114 HOH HOH . C 3 HOH A 55 355 39 HOH HOH . C 3 HOH A 56 356 64 HOH HOH . C 3 HOH A 57 357 24 HOH HOH . C 3 HOH A 58 358 38 HOH HOH . C 3 HOH A 59 359 78 HOH HOH . C 3 HOH A 60 360 79 HOH HOH . C 3 HOH A 61 361 98 HOH HOH . C 3 HOH A 62 362 13 HOH HOH . C 3 HOH A 63 363 69 HOH HOH . C 3 HOH A 64 364 18 HOH HOH . C 3 HOH A 65 365 54 HOH HOH . C 3 HOH A 66 366 10 HOH HOH . C 3 HOH A 67 367 100 HOH HOH . C 3 HOH A 68 368 83 HOH HOH . C 3 HOH A 69 369 67 HOH HOH . C 3 HOH A 70 370 63 HOH HOH . C 3 HOH A 71 371 58 HOH HOH . C 3 HOH A 72 372 57 HOH HOH . C 3 HOH A 73 373 81 HOH HOH . C 3 HOH A 74 374 36 HOH HOH . C 3 HOH A 75 375 110 HOH HOH . C 3 HOH A 76 376 50 HOH HOH . C 3 HOH A 77 377 16 HOH HOH . C 3 HOH A 78 378 15 HOH HOH . C 3 HOH A 79 379 62 HOH HOH . C 3 HOH A 80 380 34 HOH HOH . C 3 HOH A 81 381 30 HOH HOH . C 3 HOH A 82 382 88 HOH HOH . C 3 HOH A 83 383 42 HOH HOH . C 3 HOH A 84 384 72 HOH HOH . C 3 HOH A 85 385 89 HOH HOH . C 3 HOH A 86 386 91 HOH HOH . C 3 HOH A 87 387 52 HOH HOH . C 3 HOH A 88 388 31 HOH HOH . C 3 HOH A 89 389 86 HOH HOH . C 3 HOH A 90 390 92 HOH HOH . C 3 HOH A 91 391 26 HOH HOH . C 3 HOH A 92 392 95 HOH HOH . C 3 HOH A 93 393 94 HOH HOH . C 3 HOH A 94 394 107 HOH HOH . C 3 HOH A 95 395 28 HOH HOH . C 3 HOH A 96 396 44 HOH HOH . C 3 HOH A 97 397 56 HOH HOH . C 3 HOH A 98 398 106 HOH HOH . C 3 HOH A 99 399 87 HOH HOH . C 3 HOH A 100 400 71 HOH HOH . C 3 HOH A 101 401 66 HOH HOH . C 3 HOH A 102 402 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . B 2 18.018 40.147 50.902 1 37.23 ? N1 EPE 200 A 1 HETATM 2 C C2 EPE . . . B 2 19.313 40.07 51.58 1 33.32 ? C2 EPE 200 A 1 HETATM 3 C C3 EPE . . . B 2 20.342 41.074 51.083 1 36.41 ? C3 EPE 200 A 1 HETATM 4 N N4 EPE . . . B 2 19.775 42.431 51.112 1 31.62 ? N4 EPE 200 A 1 HETATM 5 C C5 EPE . . . B 2 18.505 42.445 50.345 1 29.62 ? C5 EPE 200 A 1 HETATM 6 C C6 EPE . . . B 2 17.488 41.509 50.996 1 33.27 ? C6 EPE 200 A 1 HETATM 7 C C7 EPE . . . B 2 20.74 43.356 50.47 1 34.65 ? C7 EPE 200 A 1 HETATM 8 C C8 EPE . . . B 2 22.155 43.274 51.051 1 35.7 ? C8 EPE 200 A 1 HETATM 9 O O8 EPE . . . B 2 22.121 43.277 52.476 1 35.67 ? O8 EPE 200 A 1 HETATM 10 C C9 EPE . . . B 2 17.167 39.223 51.663 1 41.93 ? C9 EPE 200 A 1 HETATM 11 C C10 EPE . . . B 2 15.796 38.901 51.092 1 66.61 ? C10 EPE 200 A 1 HETATM 12 S S EPE . . . B 2 15.114 37.629 51.971 1 58.35 ? S EPE 200 A 1 HETATM 13 O O1S EPE . . . B 2 13.809 37.302 51.339 1 68.15 ? O1S EPE 200 A 1 HETATM 14 O O2S EPE . . . B 2 15.985 36.427 51.884 1 41.12 ? O2S EPE 200 A 1 HETATM 15 O O3S EPE . . . B 2 14.935 38.002 53.408 1 49.85 ? O3S EPE 200 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #