data_5ZBZ
#
_model_server_result.job_id            47n1F1Hlktyx1XZy_RAFhw 
_model_server_result.datetime_utc      '2024-10-15 08:23:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zbz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    5ZBZ 
#
_exptl.entry_id    5ZBZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.775 
_cell.angle_gamma         90 
_cell.entry_id            5ZBZ 
_cell.length_a            73.471 
_cell.length_b            56.63 
_cell.length_c            66.324 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZBZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 35 A GLU 53 1_555 A N MLY 36 A MLY 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale2 A C MLY 36 A MLY 54 1_555 A N PRO 37 A PRO 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 A C ILE 49 A ILE 67 1_555 A N MLY 50 A MLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 A C MLY 50 A MLY 68 1_555 A N GLY 51 A GLY 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 A C GLY 63 A GLY 81 1_555 A N MLY 64 A MLY 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale6 A C MLY 64 A MLY 82 1_555 A N THR 65 A THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 A C LEU 80 A LEU 98 1_555 A N MLY 81 A MLY 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 A C MLY 81 A MLY 99 1_555 A N ALA 82 A ALA 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 A C GLN 99 A GLN 117 1_555 A N MLY 100 A MLY 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale10 A C MLY 100 A MLY 118 1_555 A N VAL 101 A VAL 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale11 A C GLN 127 A GLN 145 1_555 A N MLY 128 A MLY 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale12 A C MLY 128 A MLY 146 1_555 A N LEU 129 A LEU 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale13 A C PRO 155 A PRO 173 1_555 A N MLY 156 A MLY 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale14 A C MLY 156 A MLY 174 1_555 A N TYR 157 A TYR 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale15 A C ILE 158 A ILE 176 1_555 A N MLY 159 A MLY 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale16 A C MLY 159 A MLY 177 1_555 A N MET 160 A MET 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale17 A C PHE 174 A PHE 192 1_555 A N MLY 175 A MLY 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale18 A C MLY 175 A MLY 193 1_555 A N ASP 176 A ASP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale19 A C GLN 183 A GLN 201 1_555 A N MLY 184 A MLY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 A C MLY 184 A MLY 202 1_555 A N LEU 185 A LEU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale21 A C THR 206 A THR 224 1_555 A N MLY 207 A MLY 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale22 A C MLY 207 A MLY 225 1_555 A N MLY 208 A MLY 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale23 A C MLY 208 A MLY 226 1_555 A N PHE 209 A PHE 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale24 A C VAL 218 A VAL 236 1_555 A N MLY 219 A MLY 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale25 A C MLY 219 A MLY 237 1_555 A N MLY 220 A MLY 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 213 n n 
C1 C3 MLI sing 214 n n 
C1 H11 MLI sing 215 n n 
C1 H12 MLI sing 216 n n 
C2 O6 MLI doub 217 n n 
C2 O7 MLI sing 218 n n 
C3 O8 MLI doub 219 n n 
C3 O9 MLI sing 220 n n 
#
_atom_sites.entry_id                     5ZBZ 
_atom_sites.fract_transf_matrix[1][1]    0.013611 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006868 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017658 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016888 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAU A 1 301 301 SAU SAU . 
C 3 MLI A 1 302 302 MLI MLI . 
D 4 HOH A 1 401 402 HOH HOH . 
D 4 HOH A 2 402 403 HOH HOH . 
D 4 HOH A 3 403 401 HOH HOH . 
D 4 HOH A 4 404 405 HOH HOH . 
D 4 HOH A 5 405 440 HOH HOH . 
D 4 HOH A 6 406 407 HOH HOH . 
D 4 HOH A 7 407 406 HOH HOH . 
D 4 HOH A 8 408 413 HOH HOH . 
D 4 HOH A 9 409 404 HOH HOH . 
D 4 HOH A 10 410 409 HOH HOH . 
D 4 HOH A 11 411 411 HOH HOH . 
D 4 HOH A 12 412 410 HOH HOH . 
D 4 HOH A 13 413 408 HOH HOH . 
D 4 HOH A 14 414 412 HOH HOH . 
D 4 HOH A 15 415 439 HOH HOH . 
D 4 HOH A 16 416 417 HOH HOH . 
D 4 HOH A 17 417 414 HOH HOH . 
D 4 HOH A 18 418 415 HOH HOH . 
D 4 HOH A 19 419 424 HOH HOH . 
D 4 HOH A 20 420 420 HOH HOH . 
D 4 HOH A 21 421 416 HOH HOH . 
D 4 HOH A 22 422 435 HOH HOH . 
D 4 HOH A 23 423 419 HOH HOH . 
D 4 HOH A 24 424 422 HOH HOH . 
D 4 HOH A 25 425 423 HOH HOH . 
D 4 HOH A 26 426 426 HOH HOH . 
D 4 HOH A 27 427 425 HOH HOH . 
D 4 HOH A 28 428 418 HOH HOH . 
D 4 HOH A 29 429 433 HOH HOH . 
D 4 HOH A 30 430 443 HOH HOH . 
D 4 HOH A 31 431 429 HOH HOH . 
D 4 HOH A 32 432 436 HOH HOH . 
D 4 HOH A 33 433 451 HOH HOH . 
D 4 HOH A 34 434 427 HOH HOH . 
D 4 HOH A 35 435 437 HOH HOH . 
D 4 HOH A 36 436 432 HOH HOH . 
D 4 HOH A 37 437 438 HOH HOH . 
D 4 HOH A 38 438 445 HOH HOH . 
D 4 HOH A 39 439 450 HOH HOH . 
D 4 HOH A 40 440 463 HOH HOH . 
D 4 HOH A 41 441 421 HOH HOH . 
D 4 HOH A 42 442 457 HOH HOH . 
D 4 HOH A 43 443 459 HOH HOH . 
D 4 HOH A 44 444 434 HOH HOH . 
D 4 HOH A 45 445 428 HOH HOH . 
D 4 HOH A 46 446 441 HOH HOH . 
D 4 HOH A 47 447 442 HOH HOH . 
D 4 HOH A 48 448 444 HOH HOH . 
D 4 HOH A 49 449 431 HOH HOH . 
D 4 HOH A 50 450 449 HOH HOH . 
D 4 HOH A 51 451 460 HOH HOH . 
D 4 HOH A 52 452 488 HOH HOH . 
D 4 HOH A 53 453 448 HOH HOH . 
D 4 HOH A 54 454 477 HOH HOH . 
D 4 HOH A 55 455 486 HOH HOH . 
D 4 HOH A 56 456 458 HOH HOH . 
D 4 HOH A 57 457 455 HOH HOH . 
D 4 HOH A 58 458 454 HOH HOH . 
D 4 HOH A 59 459 452 HOH HOH . 
D 4 HOH A 60 460 462 HOH HOH . 
D 4 HOH A 61 461 447 HOH HOH . 
D 4 HOH A 62 462 469 HOH HOH . 
D 4 HOH A 63 463 465 HOH HOH . 
D 4 HOH A 64 464 453 HOH HOH . 
D 4 HOH A 65 465 497 HOH HOH . 
D 4 HOH A 66 466 468 HOH HOH . 
D 4 HOH A 67 467 456 HOH HOH . 
D 4 HOH A 68 468 476 HOH HOH . 
D 4 HOH A 69 469 430 HOH HOH . 
D 4 HOH A 70 470 481 HOH HOH . 
D 4 HOH A 71 471 464 HOH HOH . 
D 4 HOH A 72 472 467 HOH HOH . 
D 4 HOH A 73 473 461 HOH HOH . 
D 4 HOH A 74 474 466 HOH HOH . 
D 4 HOH A 75 475 482 HOH HOH . 
D 4 HOH A 76 476 496 HOH HOH . 
D 4 HOH A 77 477 474 HOH HOH . 
D 4 HOH A 78 478 473 HOH HOH . 
D 4 HOH A 79 479 489 HOH HOH . 
D 4 HOH A 80 480 472 HOH HOH . 
D 4 HOH A 81 481 484 HOH HOH . 
D 4 HOH A 82 482 492 HOH HOH . 
D 4 HOH A 83 483 446 HOH HOH . 
D 4 HOH A 84 484 470 HOH HOH . 
D 4 HOH A 85 485 479 HOH HOH . 
D 4 HOH A 86 486 483 HOH HOH . 
D 4 HOH A 87 487 478 HOH HOH . 
D 4 HOH A 88 488 480 HOH HOH . 
D 4 HOH A 89 489 487 HOH HOH . 
D 4 HOH A 90 490 485 HOH HOH . 
D 4 HOH A 91 491 493 HOH HOH . 
D 4 HOH A 92 492 500 HOH HOH . 
D 4 HOH A 93 493 471 HOH HOH . 
D 4 HOH A 94 494 475 HOH HOH . 
D 4 HOH A 95 495 490 HOH HOH . 
D 4 HOH A 96 496 491 HOH HOH . 
D 4 HOH A 97 497 495 HOH HOH . 
D 4 HOH A 98 498 499 HOH HOH . 
D 4 HOH A 99 499 502 HOH HOH . 
D 4 HOH A 100 500 494 HOH HOH . 
D 4 HOH A 101 501 501 HOH HOH . 
D 4 HOH A 102 502 504 HOH HOH . 
D 4 HOH A 103 503 503 HOH HOH . 
D 4 HOH A 104 504 506 HOH HOH . 
D 4 HOH A 105 505 507 HOH HOH . 
D 4 HOH A 106 506 510 HOH HOH . 
D 4 HOH A 107 507 509 HOH HOH . 
D 4 HOH A 108 508 505 HOH HOH . 
D 4 HOH A 109 509 512 HOH HOH . 
D 4 HOH A 110 510 498 HOH HOH . 
D 4 HOH A 111 511 511 HOH HOH . 
D 4 HOH A 112 512 514 HOH HOH . 
D 4 HOH A 113 513 513 HOH HOH . 
D 4 HOH A 114 514 508 HOH HOH . 
D 4 HOH A 115 515 519 HOH HOH . 
D 4 HOH A 116 516 516 HOH HOH . 
D 4 HOH A 117 517 515 HOH HOH . 
D 4 HOH A 118 518 520 HOH HOH . 
D 4 HOH A 119 519 518 HOH HOH . 
D 4 HOH A 120 520 523 HOH HOH . 
D 4 HOH A 121 521 524 HOH HOH . 
D 4 HOH A 122 522 521 HOH HOH . 
D 4 HOH A 123 523 522 HOH HOH . 
D 4 HOH A 124 524 517 HOH HOH . 
D 4 HOH A 125 525 525 HOH HOH . 
D 4 HOH A 126 526 526 HOH HOH . 
D 4 HOH A 127 527 527 HOH HOH . 
D 4 HOH A 128 528 528 HOH HOH . 
D 4 HOH A 129 529 529 HOH HOH . 
D 4 HOH A 130 530 530 HOH HOH . 
D 4 HOH A 131 531 531 HOH HOH . 
D 4 HOH A 132 532 532 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . C 3 -13.866 -5.551 24.91 1 14.73 ? C1 MLI 302 A 1 
HETATM 2 C C2 MLI . . . C 3 -14.905 -6.491 24.323 1 14.94 ? C2 MLI 302 A 1 
HETATM 3 C C3 MLI . . . C 3 -12.457 -6.005 24.724 1 15.89 ? C3 MLI 302 A 1 
HETATM 4 O O6 MLI . . . C 3 -15.564 -5.927 23.416 1 17.75 ? O6 MLI 302 A 1 
HETATM 5 O O7 MLI . . . C 3 -15.125 -7.698 24.59 1 17.27 ? O7 MLI 302 A 1 
HETATM 6 O O8 MLI . . . C 3 -11.758 -5.096 24.266 1 15.87 ? O8 MLI 302 A 1 
HETATM 7 O O9 MLI . . . C 3 -12.055 -7.165 24.933 1 15.47 ? O9 MLI 302 A 1 
HETATM 8 H H11 MLI . . . C 3 -13.967 -4.682 24.493 1 17.71 ? H11 MLI 302 A 1 
HETATM 9 H H12 MLI . . . C 3 -14.037 -5.459 25.861 1 17.71 ? H12 MLI 302 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           9 
#