data_5ZC5 # _model_server_result.job_id J1CnB5sNqmUfHzuHf7pZJg _model_server_result.datetime_utc '2024-11-05 04:48:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5ZC5 # _exptl.entry_id 5ZC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 411.433 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(4-fluoranyl-1-benzofuran-2-yl)pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZC5 _cell.length_a 120.698 _cell.length_b 120.698 _cell.length_c 42.769 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'C20 H22 F N7 O2' _chem_comp.formula_weight 411.433 _chem_comp.id 09I _chem_comp.mon_nstd_flag . _chem_comp.name 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(4-fluoranyl-1-benzofuran-2-yl)pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C5 09I sing 1 n n C4 C5 09I doub 2 n y C4 C3 09I sing 3 n y C5 C6 09I sing 4 n y C3 C2 09I doub 5 n y C6 C1 09I doub 6 n y C6 C7 09I sing 7 n y C2 C1 09I sing 8 n y C1 O1 09I sing 9 n y C7 C8 09I doub 10 n y O1 C8 09I sing 11 n y C18 C19 09I sing 12 n n C18 C17 09I sing 13 n n C8 C9 09I sing 14 n n C19 N3 09I sing 15 n n C17 C16 09I sing 16 n n C9 N1 09I doub 17 n y C9 C12 09I sing 18 n y N7 C20 09I doub 19 n n N3 C12 09I sing 20 n n N3 C14 09I sing 21 n n N1 C10 09I sing 22 n y C16 C15 09I sing 23 n n C12 N2 09I doub 24 n y N5 C20 09I sing 25 n n N5 C13 09I sing 26 n n C20 N6 09I sing 27 n n C14 C15 09I sing 28 n n C10 C13 09I sing 29 n n C10 C11 09I doub 30 n y N2 C11 09I sing 31 n y C13 O2 09I doub 32 n n C11 N4 09I sing 33 n n C3 H1 09I sing 34 n n C17 H2 09I sing 35 n n C17 H3 09I sing 36 n n C14 H4 09I sing 37 n n C14 H5 09I sing 38 n n C19 H6 09I sing 39 n n C19 H7 09I sing 40 n n C4 H8 09I sing 41 n n C7 H9 09I sing 42 n n C18 H10 09I sing 43 n n C18 H11 09I sing 44 n n C2 H12 09I sing 45 n n C16 H13 09I sing 46 n n C16 H14 09I sing 47 n n C15 H15 09I sing 48 n n C15 H16 09I sing 49 n n N4 H17 09I sing 50 n n N4 H18 09I sing 51 n n N5 H19 09I sing 52 n n N7 H20 09I sing 53 n n N6 H21 09I sing 54 n n N6 H22 09I sing 55 n n # _atom_sites.entry_id 5ZC5 _atom_sites.fract_transf_matrix[1][1] 0.008285 _atom_sites.fract_transf_matrix[1][2] 0.004783 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 09I U 1 301 301 09I 09I . C 3 HOH U 1 401 401 HOH HOH . C 3 HOH U 2 402 402 HOH HOH . C 3 HOH U 3 403 403 HOH HOH . C 3 HOH U 4 404 404 HOH HOH . C 3 HOH U 5 405 405 HOH HOH . C 3 HOH U 6 406 406 HOH HOH . C 3 HOH U 7 407 408 HOH HOH . C 3 HOH U 8 408 409 HOH HOH . C 3 HOH U 9 409 410 HOH HOH . C 3 HOH U 10 410 407 HOH HOH . C 3 HOH U 11 411 411 HOH HOH . C 3 HOH U 12 412 412 HOH HOH . C 3 HOH U 13 413 413 HOH HOH . C 3 HOH U 14 414 414 HOH HOH . C 3 HOH U 15 415 415 HOH HOH . C 3 HOH U 16 416 416 HOH HOH . C 3 HOH U 17 417 417 HOH HOH . C 3 HOH U 18 418 418 HOH HOH . C 3 HOH U 19 419 419 HOH HOH . C 3 HOH U 20 420 420 HOH HOH . C 3 HOH U 21 421 421 HOH HOH . C 3 HOH U 22 422 422 HOH HOH . C 3 HOH U 23 423 423 HOH HOH . C 3 HOH U 24 424 424 HOH HOH . C 3 HOH U 25 425 425 HOH HOH . C 3 HOH U 26 426 426 HOH HOH . C 3 HOH U 27 427 427 HOH HOH . C 3 HOH U 28 428 428 HOH HOH . C 3 HOH U 29 429 429 HOH HOH . C 3 HOH U 30 430 430 HOH HOH . C 3 HOH U 31 431 431 HOH HOH . C 3 HOH U 32 432 432 HOH HOH . C 3 HOH U 33 433 433 HOH HOH . C 3 HOH U 34 434 434 HOH HOH . C 3 HOH U 35 435 435 HOH HOH . C 3 HOH U 36 436 436 HOH HOH . C 3 HOH U 37 437 437 HOH HOH . C 3 HOH U 38 438 438 HOH HOH . C 3 HOH U 39 439 439 HOH HOH . C 3 HOH U 40 440 440 HOH HOH . C 3 HOH U 41 441 441 HOH HOH . C 3 HOH U 42 442 442 HOH HOH . C 3 HOH U 43 443 443 HOH HOH . C 3 HOH U 44 444 444 HOH HOH . C 3 HOH U 45 445 445 HOH HOH . C 3 HOH U 46 446 446 HOH HOH . C 3 HOH U 47 447 447 HOH HOH . C 3 HOH U 48 448 448 HOH HOH . C 3 HOH U 49 449 449 HOH HOH . C 3 HOH U 50 450 450 HOH HOH . C 3 HOH U 51 451 451 HOH HOH . C 3 HOH U 52 452 452 HOH HOH . C 3 HOH U 53 453 453 HOH HOH . C 3 HOH U 54 454 454 HOH HOH . C 3 HOH U 55 455 455 HOH HOH . C 3 HOH U 56 456 456 HOH HOH . C 3 HOH U 57 457 457 HOH HOH . C 3 HOH U 58 458 458 HOH HOH . C 3 HOH U 59 459 459 HOH HOH . C 3 HOH U 60 460 460 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 09I . . . B 2 -2.256 -32.862 -31.988 1 41.53 ? C5 09I 301 U 1 HETATM 2 C C8 09I . . . B 2 -1.553 -32.611 -28.4 1 36.94 ? C8 09I 301 U 1 HETATM 3 C C3 09I . . . B 2 -4.324 -31.593 -31.898 1 40.43 ? C3 09I 301 U 1 HETATM 4 C C6 09I . . . B 2 -2.104 -32.706 -30.609 1 40.39 ? C6 09I 301 U 1 HETATM 5 C C1 09I . . . B 2 -3.059 -32.005 -29.921 1 39.61 ? C1 09I 301 U 1 HETATM 6 C C17 09I . . . B 2 1.839 -28.692 -27.753 1 41.32 ? C17 09I 301 U 1 HETATM 7 C C14 09I . . . B 2 -0.108 -29.292 -25.587 1 37.91 ? C14 09I 301 U 1 HETATM 8 C C9 09I . . . B 2 -1.031 -32.721 -27.025 1 34.88 ? C9 09I 301 U 1 HETATM 9 C C20 09I . . . B 2 -1.47 -37.843 -25.789 1 28.27 ? C20 09I 301 U 1 HETATM 10 C C19 09I . . . B 2 -0.403 -29.789 -27.985 1 39.86 ? C19 09I 301 U 1 HETATM 11 C C4 09I . . . B 2 -3.373 -32.308 -32.626 1 41.89 ? C4 09I 301 U 1 HETATM 12 C C13 09I . . . B 2 -0.937 -35.701 -24.873 1 30.59 ? C13 09I 301 U 1 HETATM 13 C C7 09I . . . B 2 -1.127 -33.117 -29.626 1 38.39 ? C7 09I 301 U 1 HETATM 14 C C18 09I . . . B 2 1.035 -29.772 -28.478 1 41.01 ? C18 09I 301 U 1 HETATM 15 C C2 09I . . . B 2 -4.174 -31.43 -30.52 1 41.13 ? C2 09I 301 U 1 HETATM 16 F F1 09I . . . B 2 -1.332 -33.543 -32.687 1 42.48 ? F1 09I 301 U 1 HETATM 17 O O1 09I . . . B 2 -2.743 -31.966 -28.647 1 38.71 ? O1 09I 301 U 1 HETATM 18 C C12 09I . . . B 2 -0.571 -31.672 -26.217 1 34.5 ? C12 09I 301 U 1 HETATM 19 N N3 09I . . . B 2 -0.393 -30.31 -26.606 1 36.71 ? N3 09I 301 U 1 HETATM 20 C C16 09I . . . B 2 2.388 -29.207 -26.419 1 40.78 ? C16 09I 301 U 1 HETATM 21 C C15 09I . . . B 2 1.39 -29.308 -25.256 1 38.94 ? C15 09I 301 U 1 HETATM 22 N N2 09I . . . B 2 -0.212 -32.017 -24.939 1 34.04 ? N2 09I 301 U 1 HETATM 23 C C11 09I . . . B 2 -0.315 -33.275 -24.455 1 32.65 ? C11 09I 301 U 1 HETATM 24 N N4 09I . . . B 2 0.055 -33.546 -23.18 1 34.44 ? N4 09I 301 U 1 HETATM 25 C C10 09I . . . B 2 -0.809 -34.276 -25.279 1 31.66 ? C10 09I 301 U 1 HETATM 26 N N1 09I . . . B 2 -1.149 -33.973 -26.545 1 33 ? N1 09I 301 U 1 HETATM 27 O O2 09I . . . B 2 -0.809 -36.018 -23.703 1 30.69 ? O2 09I 301 U 1 HETATM 28 N N5 09I . . . B 2 -1.092 -36.576 -25.886 1 29.22 ? N5 09I 301 U 1 HETATM 29 N N7 09I . . . B 2 -1.535 -38.571 -26.905 1 26.55 ? N7 09I 301 U 1 HETATM 30 N N6 09I . . . B 2 -1.767 -38.38 -24.609 1 28.61 ? N6 09I 301 U 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 30 #