data_5ZC6 # _model_server_result.job_id cij8_hdfcqisTXnUEMEwvQ _model_server_result.datetime_utc '2024-11-26 05:55:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zc6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5ZC6 # _exptl.entry_id 5ZC6 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 B O1G GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc3 B O2B GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 5ZC6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 KBF A 1 202 202 KBF KBF . D 4 MG A 1 203 203 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -8.406 8.176 8.619 1 0 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . B 2 -8.543 6.75 8.136 1 0 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . B 2 -6.972 8.64 8.536 1 0 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . B 2 -8.929 8.307 10.032 1 0 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . B 2 -9.308 9.096 7.639 1 0 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . B 2 -8.854 9.269 6.087 1 0 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . B 2 -10.059 9.124 5.168 1 0 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . B 2 -7.832 8.205 5.712 1 0 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . B 2 -8.237 10.653 5.845 1 0 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . B 2 -6.77 11.04 6.134 1 0 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . B 2 -5.917 9.799 6.375 1 0 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . B 2 -6.676 11.929 7.371 1 0 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . B 2 -6.149 11.834 4.967 1 0 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . B 2 -7.002 12.664 4.139 1 0 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . B 2 -6.185 13.899 3.719 1 0 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . B 2 -5.1 13.479 2.89 1 0 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . B 2 -6.934 14.977 2.899 1 0 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . B 2 -6.544 16.252 3.41 1 0 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . B 2 -6.434 14.765 1.474 1 0 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . B 2 -6.648 15.937 0.693 1 0 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . B 2 -4.982 14.334 1.743 1 0 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . B 2 -4.367 13.57 0.613 1 0 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . B 2 -4.253 12.2 0.498 1 0 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . B 2 -3.656 11.807 -0.591 1 0 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . B 2 -3.324 12.983 -1.264 1 0 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . B 2 -2.639 13.227 -2.521 1 0 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . B 2 -2.179 12.441 -3.336 1 0 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . B 2 -2.481 14.572 -2.833 1 0 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . B 2 -2.93 15.597 -2.048 1 0 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . B 2 -2.701 16.831 -2.445 1 0 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . B 2 -3.588 15.407 -0.882 1 0 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . B 2 -3.755 14.078 -0.528 1 0 ? C4 GNP 201 A 1 HETATM 33 H HNB3 GNP . . . B 2 -10.302 9.126 7.854 1 0.01 ? HNB3 GNP 201 A 1 HETATM 34 H "H5'2" GNP . . . B 2 -7.886 12.976 4.711 1 0.01 ? "H5'2" GNP 201 A 1 HETATM 35 H "H5'1" GNP . . . B 2 -7.346 12.11 3.262 1 0.01 ? "H5'1" GNP 201 A 1 HETATM 36 H H4' GNP . . . B 2 -5.79 14.353 4.647 1 0.01 ? H4' GNP 201 A 1 HETATM 37 H H3' GNP . . . B 2 -8.021 14.849 2.942 1 0.01 ? H3' GNP 201 A 1 HETATM 38 H HO3' GNP . . . B 2 -5.579 16.348 3.388 1 0.01 ? HO3' GNP 201 A 1 HETATM 39 H H2' GNP . . . B 2 -7.007 13.93 1.037 1 0.01 ? H2' GNP 201 A 1 HETATM 40 H HO2' GNP . . . B 2 -6.769 15.702 -0.246 1 0.01 ? HO2' GNP 201 A 1 HETATM 41 H H1' GNP . . . B 2 -4.378 15.221 1.973 1 0.01 ? H1' GNP 201 A 1 HETATM 42 H H8 GNP . . . B 2 -4.622 11.498 1.24 1 0.01 ? H8 GNP 201 A 1 HETATM 43 H HN1 GNP . . . B 2 -1.996 14.729 -3.695 1 0.01 ? HN1 GNP 201 A 1 HETATM 44 H HN21 GNP . . . B 2 -2.213 17.045 -3.301 1 0.01 ? HN21 GNP 201 A 1 HETATM 45 H HN22 GNP . . . B 2 -3.012 17.595 -1.865 1 0.01 ? HN22 GNP 201 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 4648 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #