data_5ZC6
#
_model_server_result.job_id            eJOSQXRhVuFclJJ2TUtg5A 
_model_server_result.datetime_utc      '2024-11-26 05:56:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zc6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5ZC6 
#
_exptl.entry_id    5ZC6 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              271.311 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-oxidanyl-~{N}-[[(2~{R})-oxolan-2-yl]methyl]naphthalene-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc2 B O1G GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc3 B O2B GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
#
_chem_comp.formula           'C16 H17 N O3' 
_chem_comp.formula_weight    271.311 
_chem_comp.id                KBF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-oxidanyl-~{N}-[[(2~{R})-oxolan-2-yl]methyl]naphthalene-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-hydroxy-N-(tetrahydrofuran-2-ylmethyl)naphthalene-2-carboxamide 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C5 KBF doub 222 n y 
C4 C3 KBF sing 223 n y 
C15 C16 KBF sing 224 n n 
C15 C14 KBF sing 225 n n 
C5 C6 KBF sing 226 n y 
C2 C3 KBF doub 227 n y 
C2 C1 KBF sing 228 n y 
C3 C8 KBF sing 229 n y 
O1 C1 KBF sing 230 n n 
C16 O3 KBF sing 231 n n 
C1 C10 KBF doub 232 n y 
C14 C13 KBF sing 233 n n 
C6 C7 KBF doub 234 n y 
C8 C7 KBF sing 235 n y 
C8 C9 KBF doub 236 n y 
C10 C9 KBF sing 237 n y 
C10 C11 KBF sing 238 n n 
O3 C13 KBF sing 239 n n 
C13 C12 KBF sing 240 n n 
N C11 KBF sing 241 n n 
N C12 KBF sing 242 n n 
C11 O2 KBF doub 243 n n 
C4 H2 KBF sing 244 n n 
C5 H3 KBF sing 245 n n 
C6 H4 KBF sing 246 n n 
C7 H5 KBF sing 247 n n 
C9 H6 KBF sing 248 n n 
O1 H22 KBF sing 249 n n 
C2 H1 KBF sing 250 n n 
N H21 KBF sing 251 n n 
C12 H8 KBF sing 252 n n 
C12 H7 KBF sing 253 n n 
C15 H12 KBF sing 254 n n 
C15 H13 KBF sing 255 n n 
C14 H10 KBF sing 256 n n 
C14 H11 KBF sing 257 n n 
C13 H9 KBF sing 258 n n 
C16 H15 KBF sing 259 n n 
C16 H14 KBF sing 260 n n 
#
_atom_sites.entry_id                     5ZC6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GNP A 1 201 201 GNP GNP . 
C 3 KBF A 1 202 202 KBF KBF . 
D 4 MG A 1 203 203 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 KBF . . . C 3 -10.187 -9.083 7.263 1 0 ? C3 KBF 202 A 1 
HETATM 2 C C4 KBF . . . C 3 -9.526 -7.995 6.634 1 0 ? C4 KBF 202 A 1 
HETATM 3 C C5 KBF . . . C 3 -8.25 -7.638 7.008 1 0 ? C5 KBF 202 A 1 
HETATM 4 C C6 KBF . . . C 3 -7.579 -8.35 8.026 1 0 ? C6 KBF 202 A 1 
HETATM 5 C C7 KBF . . . C 3 -8.196 -9.408 8.652 1 0 ? C7 KBF 202 A 1 
HETATM 6 C C8 KBF . . . C 3 -9.512 -9.799 8.286 1 0 ? C8 KBF 202 A 1 
HETATM 7 C C9 KBF . . . C 3 -10.165 -10.885 8.919 1 0 ? C9 KBF 202 A 1 
HETATM 8 C C10 KBF . . . C 3 -11.452 -11.277 8.572 1 0 ? C10 KBF 202 A 1 
HETATM 9 C C1 KBF . . . C 3 -12.111 -10.535 7.533 1 0 ? C1 KBF 202 A 1 
HETATM 10 O O1 KBF . . . C 3 -13.381 -10.84 7.116 1 0 ? O1 KBF 202 A 1 
HETATM 11 C C2 KBF . . . C 3 -11.499 -9.474 6.901 1 0 ? C2 KBF 202 A 1 
HETATM 12 C C11 KBF . . . C 3 -12.046 -12.394 9.266 1 0 ? C11 KBF 202 A 1 
HETATM 13 N N KBF . . . C 3 -13.383 -12.67 9.12 1 0 ? N KBF 202 A 1 
HETATM 14 C C12 KBF . . . C 3 -14.087 -13.835 9.705 1 0 ? C12 KBF 202 A 1 
HETATM 15 O O2 KBF . . . C 3 -11.405 -13.133 10.014 1 0 ? O2 KBF 202 A 1 
HETATM 16 C C15 KBF . . . C 3 -13.433 -14.305 6.485 1 0 ? C15 KBF 202 A 1 
HETATM 17 C C14 KBF . . . C 3 -14.642 -14.632 7.342 1 0 ? C14 KBF 202 A 1 
HETATM 18 C C13 KBF . . . C 3 -14.018 -14.99 8.688 1 0 ? C13 KBF 202 A 1 
HETATM 19 O O3 KBF . . . C 3 -12.65 -15.335 8.44 1 0 ? O3 KBF 202 A 1 
HETATM 20 C C16 KBF . . . C 3 -12.368 -15.226 7.053 1 0 ? C16 KBF 202 A 1 
HETATM 21 H H2 KBF . . . C 3 -10.024 -7.456 5.87 1 0.01 ? H2 KBF 202 A 1 
HETATM 22 H H3 KBF . . . C 3 -7.76 -6.824 6.535 1 0.01 ? H3 KBF 202 A 1 
HETATM 23 H H4 KBF . . . C 3 -6.597 -8.061 8.301 1 0.01 ? H4 KBF 202 A 1 
HETATM 24 H H5 KBF . . . C 3 -7.69 -9.943 9.417 1 0.01 ? H5 KBF 202 A 1 
HETATM 25 H H6 KBF . . . C 3 -9.648 -11.409 9.68 1 0.01 ? H6 KBF 202 A 1 
HETATM 26 H H22 KBF . . . C 3 -13.487 -10.641 6.166 1 0.01 ? H22 KBF 202 A 1 
HETATM 27 H H1 KBF . . . C 3 -11.998 -8.937 6.139 1 0.01 ? H1 KBF 202 A 1 
HETATM 28 H H21 KBF . . . C 3 -13.92 -11.993 8.553 1 0.01 ? H21 KBF 202 A 1 
HETATM 29 H H8 KBF . . . C 3 -13.636 -14.147 10.649 1 0.01 ? H8 KBF 202 A 1 
HETATM 30 H H7 KBF . . . C 3 -15.132 -13.582 9.883 1 0.01 ? H7 KBF 202 A 1 
HETATM 31 H H12 KBF . . . C 3 -13.618 -14.546 5.436 1 0.01 ? H12 KBF 202 A 1 
HETATM 32 H H13 KBF . . . C 3 -13.148 -13.259 6.598 1 0.01 ? H13 KBF 202 A 1 
HETATM 33 H H10 KBF . . . C 3 -15.219 -15.465 6.937 1 0.01 ? H10 KBF 202 A 1 
HETATM 34 H H11 KBF . . . C 3 -15.274 -13.75 7.452 1 0.01 ? H11 KBF 202 A 1 
HETATM 35 H H9 KBF . . . C 3 -14.512 -15.858 9.142 1 0.01 ? H9 KBF 202 A 1 
HETATM 36 H H15 KBF . . . C 3 -11.369 -14.817 6.895 1 0.01 ? H15 KBF 202 A 1 
HETATM 37 H H14 KBF . . . C 3 -12.443 -16.21 6.584 1 0.01 ? H14 KBF 202 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           4639 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           37 
#