data_5ZC7
#
_model_server_result.job_id            e47UC186y0Zaix5CMPGjqg 
_model_server_result.datetime_utc      '2025-07-05 14:07:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zc7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    5ZC7 
#
_exptl.entry_id    5ZC7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              135.127 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ZC7 
_cell.length_a            121.074 
_cell.length_b            121.074 
_cell.length_c            50.035 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZC7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 117 A THR 117 1_555 E NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc2 A O ILE 120 A ILE 120 1_555 E NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
metalc ? metalc3 A NE2 HIS 177 A HIS 177 1_555 C NI NI . A NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc4 A NE2 HIS 177 A HIS 177 1_555 C NI NI . A NI 200 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc5 C NI NI . A NI 200 1_555 G CL CL . A CL 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc6 C NI NI . A NI 200 1_555 G CL CL . A CL 204 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc7 E NA NA . A NA 202 1_555 L O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc8 E NA NA . A NA 202 1_555 L O HOH . A HOH 362 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc9 B O THR 117 B THR 117 1_555 J NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc10 B O ILE 120 B ILE 120 1_555 J NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc11 J NA NA . B NA 202 1_555 M O HOH . B HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc12 J NA NA . B NA 202 1_555 M O HOH . B HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc13 J NA NA . B NA 202 1_555 M O HOH . B HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
#
_chem_comp.formula           'C5 H5 N5' 
_chem_comp.formula_weight    135.127 
_chem_comp.id                ADE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N9 C8 ADE sing 7 n y 
N9 C4 ADE sing 8 n y 
N9 HN9 ADE sing 9 n n 
C8 N7 ADE doub 10 n y 
C8 H8 ADE sing 11 n n 
N7 C5 ADE sing 12 n y 
C5 C6 ADE sing 13 n y 
C5 C4 ADE doub 14 n y 
C6 N6 ADE sing 15 n n 
C6 N1 ADE doub 16 n y 
N6 HN61 ADE sing 17 n n 
N6 HN62 ADE sing 18 n n 
N1 C2 ADE sing 19 n y 
C2 N3 ADE doub 20 n y 
C2 H2 ADE sing 21 n n 
N3 C4 ADE sing 22 n y 
#
_atom_sites.entry_id                     5ZC7 
_atom_sites.fract_transf_matrix[1][1]    0.008259 
_atom_sites.fract_transf_matrix[1][2]    0.004769 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009537 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019986 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NI A 1 200 200 NI NI . 
D 3 ADE A 1 201 201 ADE ADE . 
E 4 NA A 1 202 202 NA NA . 
F 5 CL A 1 203 203 CL CL . 
G 5 CL A 1 204 204 CL CL . 
H 6 ACT A 1 205 205 ACT ACT . 
I 3 ADE B 1 201 201 ADE ADE . 
J 4 NA B 1 202 202 NA NA . 
K 5 CL B 1 203 203 CL CL . 
L 7 HOH A 1 301 125 HOH HOH . 
L 7 HOH A 2 302 86 HOH HOH . 
L 7 HOH A 3 303 128 HOH HOH . 
L 7 HOH A 4 304 126 HOH HOH . 
L 7 HOH A 5 305 54 HOH HOH . 
L 7 HOH A 6 306 123 HOH HOH . 
L 7 HOH A 7 307 67 HOH HOH . 
L 7 HOH A 8 308 26 HOH HOH . 
L 7 HOH A 9 309 7 HOH HOH . 
L 7 HOH A 10 310 32 HOH HOH . 
L 7 HOH A 11 311 31 HOH HOH . 
L 7 HOH A 12 312 38 HOH HOH . 
L 7 HOH A 13 313 21 HOH HOH . 
L 7 HOH A 14 314 117 HOH HOH . 
L 7 HOH A 15 315 5 HOH HOH . 
L 7 HOH A 16 316 14 HOH HOH . 
L 7 HOH A 17 317 85 HOH HOH . 
L 7 HOH A 18 318 39 HOH HOH . 
L 7 HOH A 19 319 28 HOH HOH . 
L 7 HOH A 20 320 115 HOH HOH . 
L 7 HOH A 21 321 52 HOH HOH . 
L 7 HOH A 22 322 106 HOH HOH . 
L 7 HOH A 23 323 110 HOH HOH . 
L 7 HOH A 24 324 136 HOH HOH . 
L 7 HOH A 25 325 56 HOH HOH . 
L 7 HOH A 26 326 143 HOH HOH . 
L 7 HOH A 27 327 95 HOH HOH . 
L 7 HOH A 28 328 99 HOH HOH . 
L 7 HOH A 29 329 44 HOH HOH . 
L 7 HOH A 30 330 150 HOH HOH . 
L 7 HOH A 31 331 29 HOH HOH . 
L 7 HOH A 32 332 107 HOH HOH . 
L 7 HOH A 33 333 133 HOH HOH . 
L 7 HOH A 34 334 132 HOH HOH . 
L 7 HOH A 35 335 80 HOH HOH . 
L 7 HOH A 36 336 33 HOH HOH . 
L 7 HOH A 37 337 45 HOH HOH . 
L 7 HOH A 38 338 4 HOH HOH . 
L 7 HOH A 39 339 157 HOH HOH . 
L 7 HOH A 40 340 134 HOH HOH . 
L 7 HOH A 41 341 41 HOH HOH . 
L 7 HOH A 42 342 73 HOH HOH . 
L 7 HOH A 43 343 75 HOH HOH . 
L 7 HOH A 44 344 82 HOH HOH . 
L 7 HOH A 45 345 111 HOH HOH . 
L 7 HOH A 46 346 156 HOH HOH . 
L 7 HOH A 47 347 81 HOH HOH . 
L 7 HOH A 48 348 87 HOH HOH . 
L 7 HOH A 49 349 93 HOH HOH . 
L 7 HOH A 50 350 19 HOH HOH . 
L 7 HOH A 51 351 84 HOH HOH . 
L 7 HOH A 52 352 120 HOH HOH . 
L 7 HOH A 53 353 131 HOH HOH . 
L 7 HOH A 54 354 17 HOH HOH . 
L 7 HOH A 55 355 83 HOH HOH . 
L 7 HOH A 56 356 15 HOH HOH . 
L 7 HOH A 57 357 64 HOH HOH . 
L 7 HOH A 58 358 162 HOH HOH . 
L 7 HOH A 59 359 104 HOH HOH . 
L 7 HOH A 60 360 72 HOH HOH . 
L 7 HOH A 61 361 77 HOH HOH . 
L 7 HOH A 62 362 142 HOH HOH . 
L 7 HOH A 63 363 36 HOH HOH . 
L 7 HOH A 64 364 94 HOH HOH . 
L 7 HOH A 65 365 50 HOH HOH . 
L 7 HOH A 66 366 10 HOH HOH . 
L 7 HOH A 67 367 158 HOH HOH . 
L 7 HOH A 68 368 137 HOH HOH . 
L 7 HOH A 69 369 129 HOH HOH . 
L 7 HOH A 70 370 57 HOH HOH . 
L 7 HOH A 71 371 23 HOH HOH . 
L 7 HOH A 72 372 11 HOH HOH . 
L 7 HOH A 73 373 89 HOH HOH . 
L 7 HOH A 74 374 145 HOH HOH . 
L 7 HOH A 75 375 147 HOH HOH . 
L 7 HOH A 76 376 108 HOH HOH . 
L 7 HOH A 77 377 140 HOH HOH . 
L 7 HOH A 78 378 122 HOH HOH . 
L 7 HOH A 79 379 124 HOH HOH . 
L 7 HOH A 80 380 148 HOH HOH . 
L 7 HOH A 81 381 152 HOH HOH . 
L 7 HOH A 82 382 159 HOH HOH . 
M 7 HOH B 1 301 101 HOH HOH . 
M 7 HOH B 2 302 42 HOH HOH . 
M 7 HOH B 3 303 161 HOH HOH . 
M 7 HOH B 4 304 149 HOH HOH . 
M 7 HOH B 5 305 121 HOH HOH . 
M 7 HOH B 6 306 139 HOH HOH . 
M 7 HOH B 7 307 90 HOH HOH . 
M 7 HOH B 8 308 151 HOH HOH . 
M 7 HOH B 9 309 112 HOH HOH . 
M 7 HOH B 10 310 114 HOH HOH . 
M 7 HOH B 11 311 69 HOH HOH . 
M 7 HOH B 12 312 25 HOH HOH . 
M 7 HOH B 13 313 37 HOH HOH . 
M 7 HOH B 14 314 97 HOH HOH . 
M 7 HOH B 15 315 88 HOH HOH . 
M 7 HOH B 16 316 119 HOH HOH . 
M 7 HOH B 17 317 8 HOH HOH . 
M 7 HOH B 18 318 3 HOH HOH . 
M 7 HOH B 19 319 135 HOH HOH . 
M 7 HOH B 20 320 12 HOH HOH . 
M 7 HOH B 21 321 40 HOH HOH . 
M 7 HOH B 22 322 27 HOH HOH . 
M 7 HOH B 23 323 91 HOH HOH . 
M 7 HOH B 24 324 1 HOH HOH . 
M 7 HOH B 25 325 59 HOH HOH . 
M 7 HOH B 26 326 100 HOH HOH . 
M 7 HOH B 27 327 92 HOH HOH . 
M 7 HOH B 28 328 96 HOH HOH . 
M 7 HOH B 29 329 160 HOH HOH . 
M 7 HOH B 30 330 43 HOH HOH . 
M 7 HOH B 31 331 154 HOH HOH . 
M 7 HOH B 32 332 55 HOH HOH . 
M 7 HOH B 33 333 35 HOH HOH . 
M 7 HOH B 34 334 24 HOH HOH . 
M 7 HOH B 35 335 30 HOH HOH . 
M 7 HOH B 36 336 74 HOH HOH . 
M 7 HOH B 37 337 113 HOH HOH . 
M 7 HOH B 38 338 155 HOH HOH . 
M 7 HOH B 39 339 58 HOH HOH . 
M 7 HOH B 40 340 16 HOH HOH . 
M 7 HOH B 41 341 60 HOH HOH . 
M 7 HOH B 42 342 98 HOH HOH . 
M 7 HOH B 43 343 46 HOH HOH . 
M 7 HOH B 44 344 63 HOH HOH . 
M 7 HOH B 45 345 18 HOH HOH . 
M 7 HOH B 46 346 103 HOH HOH . 
M 7 HOH B 47 347 102 HOH HOH . 
M 7 HOH B 48 348 76 HOH HOH . 
M 7 HOH B 49 349 146 HOH HOH . 
M 7 HOH B 50 350 130 HOH HOH . 
M 7 HOH B 51 351 78 HOH HOH . 
M 7 HOH B 52 352 47 HOH HOH . 
M 7 HOH B 53 353 2 HOH HOH . 
M 7 HOH B 54 354 109 HOH HOH . 
M 7 HOH B 55 355 138 HOH HOH . 
M 7 HOH B 56 356 127 HOH HOH . 
M 7 HOH B 57 357 116 HOH HOH . 
M 7 HOH B 58 358 153 HOH HOH . 
M 7 HOH B 59 359 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N9 ADE . . . D 3 39.707 -25.315 11.737 1 21.03 ? N9 ADE 201 A 1 
HETATM 2 C C8 ADE . . . D 3 40.38 -25.137 12.908 1 21.09 ? C8 ADE 201 A 1 
HETATM 3 N N7 ADE . . . D 3 40.426 -23.81 13.146 1 21.58 ? N7 ADE 201 A 1 
HETATM 4 C C5 ADE . . . D 3 39.797 -23.189 12.169 1 19.17 ? C5 ADE 201 A 1 
HETATM 5 C C6 ADE . . . D 3 39.616 -21.779 11.867 1 19.61 ? C6 ADE 201 A 1 
HETATM 6 N N6 ADE . . . D 3 40.101 -20.814 12.664 1 19.33 ? N6 ADE 201 A 1 
HETATM 7 N N1 ADE . . . D 3 38.986 -21.486 10.76 1 20.34 ? N1 ADE 201 A 1 
HETATM 8 C C2 ADE . . . D 3 38.568 -22.451 9.889 1 21.45 ? C2 ADE 201 A 1 
HETATM 9 N N3 ADE . . . D 3 38.678 -23.779 10.15 1 21.09 ? N3 ADE 201 A 1 
HETATM 10 C C4 ADE . . . D 3 39.344 -24.161 11.25 1 20.68 ? C4 ADE 201 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           933 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           10 
#