data_5ZC9 # _model_server_result.job_id 58Cro0H0un3wvRFqfaNuVg _model_server_result.datetime_utc '2024-11-25 18:08:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5ZC9 # _exptl.entry_id 5ZC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZC9 _cell.length_a 68.508 _cell.length_b 100.263 _cell.length_c 155.422 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O3G ANP . A ANP 500 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc2 C O1B ANP . A ANP 500 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 D MG MG . A MG 501 1_555 F O HOH . A HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc4 D MG MG . A MG 501 1_555 F O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc5 D MG MG . A MG 501 1_555 F O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc6 D MG MG . A MG 501 1_555 F O HOH . A HOH 673 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ZC9 _atom_sites.fract_transf_matrix[1][1] 0.014597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 500 500 ANP ANP . D 4 MG A 1 501 501 MG MG . E 5 RCG B 1 600 600 RCG RCG . F 6 HOH A 1 601 214 HOH HOH . F 6 HOH A 2 602 239 HOH HOH . F 6 HOH A 3 603 128 HOH HOH . F 6 HOH A 4 604 140 HOH HOH . F 6 HOH A 5 605 222 HOH HOH . F 6 HOH A 6 606 45 HOH HOH . F 6 HOH A 7 607 120 HOH HOH . F 6 HOH A 8 608 10 HOH HOH . F 6 HOH A 9 609 102 HOH HOH . F 6 HOH A 10 610 80 HOH HOH . F 6 HOH A 11 611 172 HOH HOH . F 6 HOH A 12 612 167 HOH HOH . F 6 HOH A 13 613 2 HOH HOH . F 6 HOH A 14 614 24 HOH HOH . F 6 HOH A 15 615 206 HOH HOH . F 6 HOH A 16 616 36 HOH HOH . F 6 HOH A 17 617 42 HOH HOH . F 6 HOH A 18 618 3 HOH HOH . F 6 HOH A 19 619 19 HOH HOH . F 6 HOH A 20 620 34 HOH HOH . F 6 HOH A 21 621 41 HOH HOH . F 6 HOH A 22 622 67 HOH HOH . F 6 HOH A 23 623 240 HOH HOH . F 6 HOH A 24 624 40 HOH HOH . F 6 HOH A 25 625 37 HOH HOH . F 6 HOH A 26 626 18 HOH HOH . F 6 HOH A 27 627 54 HOH HOH . F 6 HOH A 28 628 84 HOH HOH . F 6 HOH A 29 629 168 HOH HOH . F 6 HOH A 30 630 23 HOH HOH . F 6 HOH A 31 631 112 HOH HOH . F 6 HOH A 32 632 116 HOH HOH . F 6 HOH A 33 633 27 HOH HOH . F 6 HOH A 34 634 231 HOH HOH . F 6 HOH A 35 635 158 HOH HOH . F 6 HOH A 36 636 50 HOH HOH . F 6 HOH A 37 637 62 HOH HOH . F 6 HOH A 38 638 63 HOH HOH . F 6 HOH A 39 639 66 HOH HOH . F 6 HOH A 40 640 151 HOH HOH . F 6 HOH A 41 641 65 HOH HOH . F 6 HOH A 42 642 189 HOH HOH . F 6 HOH A 43 643 46 HOH HOH . F 6 HOH A 44 644 143 HOH HOH . F 6 HOH A 45 645 134 HOH HOH . F 6 HOH A 46 646 125 HOH HOH . F 6 HOH A 47 647 241 HOH HOH . F 6 HOH A 48 648 58 HOH HOH . F 6 HOH A 49 649 107 HOH HOH . F 6 HOH A 50 650 237 HOH HOH . F 6 HOH A 51 651 5 HOH HOH . F 6 HOH A 52 652 44 HOH HOH . F 6 HOH A 53 653 93 HOH HOH . F 6 HOH A 54 654 88 HOH HOH . F 6 HOH A 55 655 86 HOH HOH . F 6 HOH A 56 656 114 HOH HOH . F 6 HOH A 57 657 32 HOH HOH . F 6 HOH A 58 658 85 HOH HOH . F 6 HOH A 59 659 16 HOH HOH . F 6 HOH A 60 660 1 HOH HOH . F 6 HOH A 61 661 72 HOH HOH . F 6 HOH A 62 662 69 HOH HOH . F 6 HOH A 63 663 108 HOH HOH . F 6 HOH A 64 664 142 HOH HOH . F 6 HOH A 65 665 6 HOH HOH . F 6 HOH A 66 666 39 HOH HOH . F 6 HOH A 67 667 22 HOH HOH . F 6 HOH A 68 668 73 HOH HOH . F 6 HOH A 69 669 89 HOH HOH . F 6 HOH A 70 670 236 HOH HOH . F 6 HOH A 71 671 56 HOH HOH . F 6 HOH A 72 672 28 HOH HOH . F 6 HOH A 73 673 4 HOH HOH . F 6 HOH A 74 674 81 HOH HOH . F 6 HOH A 75 675 14 HOH HOH . F 6 HOH A 76 676 135 HOH HOH . F 6 HOH A 77 677 74 HOH HOH . F 6 HOH A 78 678 144 HOH HOH . F 6 HOH A 79 679 43 HOH HOH . F 6 HOH A 80 680 145 HOH HOH . F 6 HOH A 81 681 193 HOH HOH . F 6 HOH A 82 682 111 HOH HOH . F 6 HOH A 83 683 82 HOH HOH . F 6 HOH A 84 684 51 HOH HOH . F 6 HOH A 85 685 139 HOH HOH . F 6 HOH A 86 686 250 HOH HOH . F 6 HOH A 87 687 61 HOH HOH . F 6 HOH A 88 688 94 HOH HOH . F 6 HOH A 89 689 75 HOH HOH . F 6 HOH A 90 690 148 HOH HOH . F 6 HOH A 91 691 64 HOH HOH . F 6 HOH A 92 692 83 HOH HOH . F 6 HOH A 93 693 17 HOH HOH . F 6 HOH A 94 694 29 HOH HOH . F 6 HOH A 95 695 95 HOH HOH . F 6 HOH A 96 696 38 HOH HOH . F 6 HOH A 97 697 101 HOH HOH . F 6 HOH A 98 698 8 HOH HOH . F 6 HOH A 99 699 234 HOH HOH . F 6 HOH A 100 700 161 HOH HOH . F 6 HOH A 101 701 200 HOH HOH . F 6 HOH A 102 702 7 HOH HOH . F 6 HOH A 103 703 12 HOH HOH . F 6 HOH A 104 704 244 HOH HOH . F 6 HOH A 105 705 77 HOH HOH . F 6 HOH A 106 706 70 HOH HOH . F 6 HOH A 107 707 150 HOH HOH . F 6 HOH A 108 708 99 HOH HOH . F 6 HOH A 109 709 136 HOH HOH . F 6 HOH A 110 710 33 HOH HOH . F 6 HOH A 111 711 49 HOH HOH . F 6 HOH A 112 712 181 HOH HOH . F 6 HOH A 113 713 162 HOH HOH . F 6 HOH A 114 714 31 HOH HOH . F 6 HOH A 115 715 92 HOH HOH . F 6 HOH A 116 716 122 HOH HOH . F 6 HOH A 117 717 53 HOH HOH . F 6 HOH A 118 718 127 HOH HOH . F 6 HOH A 119 719 48 HOH HOH . F 6 HOH A 120 720 11 HOH HOH . F 6 HOH A 121 721 124 HOH HOH . F 6 HOH A 122 722 121 HOH HOH . F 6 HOH A 123 723 224 HOH HOH . F 6 HOH A 124 724 147 HOH HOH . F 6 HOH A 125 725 115 HOH HOH . F 6 HOH A 126 726 30 HOH HOH . F 6 HOH A 127 727 190 HOH HOH . F 6 HOH A 128 728 155 HOH HOH . F 6 HOH A 129 729 60 HOH HOH . F 6 HOH A 130 730 15 HOH HOH . F 6 HOH A 131 731 204 HOH HOH . F 6 HOH A 132 732 131 HOH HOH . F 6 HOH A 133 733 146 HOH HOH . F 6 HOH A 134 734 153 HOH HOH . F 6 HOH A 135 735 156 HOH HOH . F 6 HOH A 136 736 232 HOH HOH . F 6 HOH A 137 737 199 HOH HOH . F 6 HOH A 138 738 188 HOH HOH . F 6 HOH A 139 739 213 HOH HOH . F 6 HOH A 140 740 118 HOH HOH . F 6 HOH A 141 741 79 HOH HOH . F 6 HOH A 142 742 157 HOH HOH . F 6 HOH A 143 743 9 HOH HOH . F 6 HOH A 144 744 59 HOH HOH . F 6 HOH A 145 745 35 HOH HOH . F 6 HOH A 146 746 254 HOH HOH . F 6 HOH A 147 747 220 HOH HOH . F 6 HOH A 148 748 259 HOH HOH . F 6 HOH A 149 749 130 HOH HOH . F 6 HOH A 150 750 170 HOH HOH . F 6 HOH A 151 751 163 HOH HOH . F 6 HOH A 152 752 113 HOH HOH . F 6 HOH A 153 753 133 HOH HOH . F 6 HOH A 154 754 171 HOH HOH . F 6 HOH A 155 755 255 HOH HOH . F 6 HOH A 156 756 221 HOH HOH . F 6 HOH A 157 757 96 HOH HOH . F 6 HOH A 158 758 207 HOH HOH . F 6 HOH A 159 759 216 HOH HOH . F 6 HOH A 160 760 87 HOH HOH . F 6 HOH A 161 761 195 HOH HOH . F 6 HOH A 162 762 174 HOH HOH . F 6 HOH A 163 763 149 HOH HOH . F 6 HOH A 164 764 230 HOH HOH . F 6 HOH A 165 765 229 HOH HOH . F 6 HOH A 166 766 209 HOH HOH . F 6 HOH A 167 767 132 HOH HOH . F 6 HOH A 168 768 166 HOH HOH . F 6 HOH A 169 769 223 HOH HOH . F 6 HOH A 170 770 78 HOH HOH . F 6 HOH A 171 771 26 HOH HOH . F 6 HOH A 172 772 217 HOH HOH . F 6 HOH A 173 773 218 HOH HOH . F 6 HOH A 174 774 228 HOH HOH . F 6 HOH A 175 775 215 HOH HOH . F 6 HOH A 176 776 251 HOH HOH . F 6 HOH A 177 777 211 HOH HOH . F 6 HOH A 178 778 180 HOH HOH . F 6 HOH A 179 779 55 HOH HOH . F 6 HOH A 180 780 233 HOH HOH . F 6 HOH A 181 781 137 HOH HOH . F 6 HOH A 182 782 184 HOH HOH . F 6 HOH A 183 783 246 HOH HOH . F 6 HOH A 184 784 68 HOH HOH . F 6 HOH A 185 785 159 HOH HOH . F 6 HOH A 186 786 109 HOH HOH . F 6 HOH A 187 787 169 HOH HOH . F 6 HOH A 188 788 245 HOH HOH . F 6 HOH A 189 789 91 HOH HOH . F 6 HOH A 190 790 201 HOH HOH . F 6 HOH A 191 791 205 HOH HOH . F 6 HOH A 192 792 225 HOH HOH . F 6 HOH A 193 793 192 HOH HOH . F 6 HOH A 194 794 123 HOH HOH . F 6 HOH A 195 795 256 HOH HOH . F 6 HOH A 196 796 185 HOH HOH . F 6 HOH A 197 797 243 HOH HOH . F 6 HOH A 198 798 98 HOH HOH . F 6 HOH A 199 799 104 HOH HOH . F 6 HOH A 200 800 182 HOH HOH . F 6 HOH A 201 801 183 HOH HOH . F 6 HOH A 202 802 219 HOH HOH . F 6 HOH A 203 803 242 HOH HOH . F 6 HOH A 204 804 202 HOH HOH . F 6 HOH A 205 805 165 HOH HOH . F 6 HOH A 206 806 226 HOH HOH . F 6 HOH A 207 807 258 HOH HOH . F 6 HOH A 208 808 178 HOH HOH . G 6 HOH B 1 701 119 HOH HOH . G 6 HOH B 2 702 100 HOH HOH . G 6 HOH B 3 703 103 HOH HOH . G 6 HOH B 4 704 97 HOH HOH . G 6 HOH B 5 705 13 HOH HOH . G 6 HOH B 6 706 71 HOH HOH . G 6 HOH B 7 707 257 HOH HOH . G 6 HOH B 8 708 105 HOH HOH . G 6 HOH B 9 709 21 HOH HOH . G 6 HOH B 10 710 110 HOH HOH . G 6 HOH B 11 711 57 HOH HOH . G 6 HOH B 12 712 20 HOH HOH . G 6 HOH B 13 713 138 HOH HOH . G 6 HOH B 14 714 197 HOH HOH . G 6 HOH B 15 715 126 HOH HOH . G 6 HOH B 16 716 141 HOH HOH . G 6 HOH B 17 717 52 HOH HOH . G 6 HOH B 18 718 175 HOH HOH . G 6 HOH B 19 719 194 HOH HOH . G 6 HOH B 20 720 47 HOH HOH . G 6 HOH B 21 721 25 HOH HOH . G 6 HOH B 22 722 198 HOH HOH . G 6 HOH B 23 723 253 HOH HOH . G 6 HOH B 24 724 212 HOH HOH . G 6 HOH B 25 725 129 HOH HOH . G 6 HOH B 26 726 90 HOH HOH . G 6 HOH B 27 727 186 HOH HOH . G 6 HOH B 28 728 106 HOH HOH . G 6 HOH B 29 729 173 HOH HOH . G 6 HOH B 30 730 117 HOH HOH . G 6 HOH B 31 731 187 HOH HOH . G 6 HOH B 32 732 177 HOH HOH . G 6 HOH B 33 733 196 HOH HOH . G 6 HOH B 34 734 154 HOH HOH . G 6 HOH B 35 735 238 HOH HOH . G 6 HOH B 36 736 191 HOH HOH . G 6 HOH B 37 737 152 HOH HOH . G 6 HOH B 38 738 164 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 47.219 _atom_site.Cartn_y 21.888 _atom_site.Cartn_z 60.446 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #