data_5ZCH # _model_server_result.job_id rVn1mDc7j3ibeYIJbIBV9Q _model_server_result.datetime_utc '2024-10-19 14:23:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zch # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 5ZCH # _exptl.entry_id 5ZCH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 62.3 _cell.angle_beta 73.09 _cell.angle_gamma 65.01 _cell.entry_id 5ZCH _cell.length_a 71.731 _cell.length_b 76.028 _cell.length_c 78.586 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZCH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 61 A ASP 118 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc2 A OD1 ASP 61 A ASP 118 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 A O GLY 62 A GLY 119 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc4 A OD1 ASP 249 A ASP 306 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 A OD2 ASP 311 A ASP 368 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc6 E MG MG . A MG 401 1_555 K O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc7 E MG MG . A MG 401 1_555 K O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc8 E MG MG . A MG 401 1_555 K O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc9 F MG MG . A MG 402 1_555 K O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc10 F MG MG . A MG 402 1_555 K O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc11 F MG MG . A MG 402 1_555 K O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc12 F MG MG . A MG 402 1_555 K O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc13 C OD1 ASP 61 B ASP 118 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc14 C OD2 ASP 61 B ASP 118 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc15 C O GLY 62 B GLY 119 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc16 C OD1 ASP 249 B ASP 306 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc17 C OD2 ASP 311 B ASP 368 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc18 H MG MG . B MG 401 1_555 M O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc19 H MG MG . B MG 401 1_555 M O HOH . B HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc20 H MG MG . B MG 401 1_555 M O HOH . B HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc21 H MG MG . B MG 401 1_555 M O HOH . B HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc22 I MG MG . B MG 402 1_555 M O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc23 I MG MG . B MG 402 1_555 M O HOH . B HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc24 I MG MG . B MG 402 1_555 M O HOH . B HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ZCH _atom_sites.fract_transf_matrix[1][1] 0.013941 _atom_sites.fract_transf_matrix[1][2] -0.006497 _atom_sites.fract_transf_matrix[1][3] -0.001823 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014511 _atom_sites.fract_transf_matrix[2][3] -0.006228 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 401 10 MG MG . F 3 MG A 1 402 13 MG MG . G 4 A8S C 1 301 202 A8S A8S . H 3 MG B 1 401 12 MG MG . I 3 MG B 1 402 10 MG MG . J 4 A8S D 1 301 202 A8S A8S . K 5 HOH A 1 501 153 HOH HOH . K 5 HOH A 2 502 30 HOH HOH . K 5 HOH A 3 503 114 HOH HOH . K 5 HOH A 4 504 145 HOH HOH . K 5 HOH A 5 505 58 HOH HOH . K 5 HOH A 6 506 163 HOH HOH . K 5 HOH A 7 507 17 HOH HOH . K 5 HOH A 8 508 3 HOH HOH . K 5 HOH A 9 509 126 HOH HOH . K 5 HOH A 10 510 131 HOH HOH . K 5 HOH A 11 511 127 HOH HOH . K 5 HOH A 12 512 85 HOH HOH . K 5 HOH A 13 513 13 HOH HOH . K 5 HOH A 14 514 134 HOH HOH . K 5 HOH A 15 515 119 HOH HOH . K 5 HOH A 16 516 98 HOH HOH . K 5 HOH A 17 517 63 HOH HOH . K 5 HOH A 18 518 165 HOH HOH . K 5 HOH A 19 519 26 HOH HOH . K 5 HOH A 20 520 48 HOH HOH . K 5 HOH A 21 521 65 HOH HOH . K 5 HOH A 22 522 32 HOH HOH . K 5 HOH A 23 523 110 HOH HOH . K 5 HOH A 24 524 70 HOH HOH . K 5 HOH A 25 525 28 HOH HOH . K 5 HOH A 26 526 45 HOH HOH . K 5 HOH A 27 527 12 HOH HOH . K 5 HOH A 28 528 56 HOH HOH . K 5 HOH A 29 529 124 HOH HOH . K 5 HOH A 30 530 14 HOH HOH . K 5 HOH A 31 531 5 HOH HOH . K 5 HOH A 32 532 2 HOH HOH . K 5 HOH A 33 533 39 HOH HOH . K 5 HOH A 34 534 102 HOH HOH . K 5 HOH A 35 535 72 HOH HOH . K 5 HOH A 36 536 107 HOH HOH . K 5 HOH A 37 537 87 HOH HOH . K 5 HOH A 38 538 94 HOH HOH . K 5 HOH A 39 539 92 HOH HOH . K 5 HOH A 40 540 164 HOH HOH . K 5 HOH A 41 541 82 HOH HOH . K 5 HOH A 42 542 154 HOH HOH . K 5 HOH A 43 543 71 HOH HOH . K 5 HOH A 44 544 104 HOH HOH . K 5 HOH A 45 545 157 HOH HOH . K 5 HOH A 46 546 55 HOH HOH . K 5 HOH A 47 547 116 HOH HOH . K 5 HOH A 48 548 129 HOH HOH . K 5 HOH A 49 549 151 HOH HOH . L 5 HOH C 1 401 125 HOH HOH . L 5 HOH C 2 402 123 HOH HOH . L 5 HOH C 3 403 80 HOH HOH . L 5 HOH C 4 404 133 HOH HOH . L 5 HOH C 5 405 99 HOH HOH . L 5 HOH C 6 406 64 HOH HOH . L 5 HOH C 7 407 22 HOH HOH . L 5 HOH C 8 408 73 HOH HOH . L 5 HOH C 9 409 118 HOH HOH . L 5 HOH C 10 410 112 HOH HOH . L 5 HOH C 11 411 100 HOH HOH . L 5 HOH C 12 412 147 HOH HOH . L 5 HOH C 13 413 148 HOH HOH . L 5 HOH C 14 414 159 HOH HOH . L 5 HOH C 15 415 54 HOH HOH . L 5 HOH C 16 416 89 HOH HOH . L 5 HOH C 17 417 42 HOH HOH . L 5 HOH C 18 418 41 HOH HOH . L 5 HOH C 19 419 31 HOH HOH . L 5 HOH C 20 420 75 HOH HOH . L 5 HOH C 21 421 96 HOH HOH . L 5 HOH C 22 422 1 HOH HOH . L 5 HOH C 23 423 113 HOH HOH . L 5 HOH C 24 424 46 HOH HOH . L 5 HOH C 25 425 162 HOH HOH . L 5 HOH C 26 426 60 HOH HOH . L 5 HOH C 27 427 66 HOH HOH . L 5 HOH C 28 428 155 HOH HOH . L 5 HOH C 29 429 143 HOH HOH . L 5 HOH C 30 430 144 HOH HOH . L 5 HOH C 31 431 53 HOH HOH . L 5 HOH C 32 432 69 HOH HOH . L 5 HOH C 33 433 16 HOH HOH . M 5 HOH B 1 501 23 HOH HOH . M 5 HOH B 2 502 47 HOH HOH . M 5 HOH B 3 503 19 HOH HOH . M 5 HOH B 4 504 137 HOH HOH . M 5 HOH B 5 505 109 HOH HOH . M 5 HOH B 6 506 149 HOH HOH . M 5 HOH B 7 507 115 HOH HOH . M 5 HOH B 8 508 95 HOH HOH . M 5 HOH B 9 509 10 HOH HOH . M 5 HOH B 10 510 111 HOH HOH . M 5 HOH B 11 511 101 HOH HOH . M 5 HOH B 12 512 138 HOH HOH . M 5 HOH B 13 513 59 HOH HOH . M 5 HOH B 14 514 128 HOH HOH . M 5 HOH B 15 515 74 HOH HOH . M 5 HOH B 16 516 21 HOH HOH . M 5 HOH B 17 517 141 HOH HOH . M 5 HOH B 18 518 62 HOH HOH . M 5 HOH B 19 519 7 HOH HOH . M 5 HOH B 20 520 139 HOH HOH . M 5 HOH B 21 521 120 HOH HOH . M 5 HOH B 22 522 84 HOH HOH . M 5 HOH B 23 523 34 HOH HOH . M 5 HOH B 24 524 18 HOH HOH . M 5 HOH B 25 525 122 HOH HOH . M 5 HOH B 26 526 8 HOH HOH . M 5 HOH B 27 527 91 HOH HOH . M 5 HOH B 28 528 11 HOH HOH . M 5 HOH B 29 529 156 HOH HOH . M 5 HOH B 30 530 136 HOH HOH . M 5 HOH B 31 531 25 HOH HOH . M 5 HOH B 32 532 27 HOH HOH . M 5 HOH B 33 533 132 HOH HOH . M 5 HOH B 34 534 33 HOH HOH . M 5 HOH B 35 535 24 HOH HOH . M 5 HOH B 36 536 9 HOH HOH . M 5 HOH B 37 537 146 HOH HOH . M 5 HOH B 38 538 36 HOH HOH . M 5 HOH B 39 539 88 HOH HOH . M 5 HOH B 40 540 79 HOH HOH . M 5 HOH B 41 541 37 HOH HOH . M 5 HOH B 42 542 142 HOH HOH . M 5 HOH B 43 543 29 HOH HOH . M 5 HOH B 44 544 161 HOH HOH . M 5 HOH B 45 545 6 HOH HOH . M 5 HOH B 46 546 38 HOH HOH . M 5 HOH B 47 547 83 HOH HOH . M 5 HOH B 48 548 35 HOH HOH . M 5 HOH B 49 549 68 HOH HOH . M 5 HOH B 50 550 93 HOH HOH . M 5 HOH B 51 551 140 HOH HOH . M 5 HOH B 52 552 105 HOH HOH . M 5 HOH B 53 553 166 HOH HOH . M 5 HOH B 54 554 117 HOH HOH . M 5 HOH B 55 555 121 HOH HOH . N 5 HOH D 1 401 57 HOH HOH . N 5 HOH D 2 402 44 HOH HOH . N 5 HOH D 3 403 20 HOH HOH . N 5 HOH D 4 404 49 HOH HOH . N 5 HOH D 5 405 51 HOH HOH . N 5 HOH D 6 406 15 HOH HOH . N 5 HOH D 7 407 50 HOH HOH . N 5 HOH D 8 408 90 HOH HOH . N 5 HOH D 9 409 152 HOH HOH . N 5 HOH D 10 410 52 HOH HOH . N 5 HOH D 11 411 43 HOH HOH . N 5 HOH D 12 412 106 HOH HOH . N 5 HOH D 13 413 135 HOH HOH . N 5 HOH D 14 414 40 HOH HOH . N 5 HOH D 15 415 103 HOH HOH . N 5 HOH D 16 416 61 HOH HOH . N 5 HOH D 17 417 150 HOH HOH . N 5 HOH D 18 418 78 HOH HOH . N 5 HOH D 19 419 97 HOH HOH . N 5 HOH D 20 420 81 HOH HOH . N 5 HOH D 21 421 160 HOH HOH . N 5 HOH D 22 422 130 HOH HOH . N 5 HOH D 23 423 77 HOH HOH . N 5 HOH D 24 424 86 HOH HOH . N 5 HOH D 25 425 76 HOH HOH . N 5 HOH D 26 426 108 HOH HOH . N 5 HOH D 27 427 158 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.786 _atom_site.Cartn_y -23.924 _atom_site.Cartn_z -36.136 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #