data_5ZCU
#
_model_server_result.job_id            1Netu7Es6gKbEi4eqy1pJQ 
_model_server_result.datetime_utc      '2024-11-14 03:07:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zcu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    5ZCU 
#
_exptl.entry_id    5ZCU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              377.256 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZCU 
_cell.length_a            75.036 
_cell.length_b            134.577 
_cell.length_c            190.267 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZCU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,I,J,M,O 1 1 
B,D,G,H,K,L,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 61 A ASP 118 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? 
metalc ? metalc2 A OD1 ASP 61 A ASP 118 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc3 A O GLY 62 A GLY 119 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc4 A OD1 ASP 249 A ASP 306 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc5 A OD2 ASP 311 A ASP 368 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc6 E MG MG . A MG 401 1_555 M O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc7 E MG MG . A MG 401 1_555 M O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc8 E MG MG . A MG 401 1_555 O O HOH . C HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc9 F MG MG . A MG 402 1_555 M O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc10 F MG MG . A MG 402 1_555 M O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc11 F MG MG . A MG 402 1_555 O O HOH . C HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc12 B OD2 ASP 61 B ASP 118 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc13 B OD1 ASP 61 B ASP 118 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc14 B O GLY 62 B GLY 119 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc15 B OD1 ASP 249 B ASP 306 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc16 B OD2 ASP 311 B ASP 368 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc17 G MG MG . B MG 401 1_555 N O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc18 G MG MG . B MG 401 1_555 N O HOH . B HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc19 H MG MG . B MG 402 1_555 N O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc20 H MG MG . B MG 402 1_555 N O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
#
_chem_comp.formula           'C16 H13 Br N2 O2 S' 
_chem_comp.formula_weight    377.256 
_chem_comp.id                PYV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Pyrabactin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S N1 PYV sing 277 n n 
S O1 PYV doub 278 n n 
S O2 PYV doub 279 n n 
S C4 PYV sing 280 n n 
BR C1 PYV sing 281 n n 
C1 C2 PYV doub 282 n y 
C1 C6 PYV sing 283 n y 
N1 C11 PYV sing 284 n n 
C2 C3 PYV sing 285 n y 
C2 C10 PYV sing 286 n y 
N2 C12 PYV doub 287 n y 
N2 C13 PYV sing 288 n y 
C3 C4 PYV doub 289 n y 
C3 C7 PYV sing 290 n y 
C4 C5 PYV sing 291 n y 
C5 C6 PYV doub 292 n y 
C7 C8 PYV doub 293 n y 
C8 C9 PYV sing 294 n y 
C9 C10 PYV doub 295 n y 
C11 C12 PYV sing 296 n n 
C12 C16 PYV sing 297 n y 
C13 C14 PYV doub 298 n y 
C14 C15 PYV sing 299 n y 
C15 C16 PYV doub 300 n y 
N1 HN1 PYV sing 301 n n 
C5 H5 PYV sing 302 n n 
C6 H6 PYV sing 303 n n 
C7 H7 PYV sing 304 n n 
C8 H8 PYV sing 305 n n 
C9 H9 PYV sing 306 n n 
C10 H10 PYV sing 307 n n 
C11 H11 PYV sing 308 n n 
C11 H11A PYV sing 309 n n 
C13 H13 PYV sing 310 n n 
C14 H14 PYV sing 311 n n 
C15 H15 PYV sing 312 n n 
C16 H16 PYV sing 313 n n 
#
_atom_sites.entry_id                     5ZCU 
_atom_sites.fract_transf_matrix[1][1]    0.013327 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007431 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005256 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG A 1 401 1 MG MG . 
F 3 MG A 1 402 2 MG MG . 
G 3 MG B 1 401 1 MG MG . 
H 3 MG B 1 402 2 MG MG . 
I 4 PYV C 1 301 1 PYV PYV . 
J 5 SO4 C 1 302 1 SO4 SO4 . 
K 4 PYV D 1 301 1 PYV PYV . 
L 5 SO4 D 1 302 2 SO4 SO4 . 
M 6 HOH A 1 501 21 HOH HOH . 
M 6 HOH A 2 502 97 HOH HOH . 
M 6 HOH A 3 503 117 HOH HOH . 
M 6 HOH A 4 504 87 HOH HOH . 
M 6 HOH A 5 505 47 HOH HOH . 
M 6 HOH A 6 506 11 HOH HOH . 
M 6 HOH A 7 507 53 HOH HOH . 
M 6 HOH A 8 508 9 HOH HOH . 
M 6 HOH A 9 509 3 HOH HOH . 
M 6 HOH A 10 510 79 HOH HOH . 
M 6 HOH A 11 511 65 HOH HOH . 
M 6 HOH A 12 512 10 HOH HOH . 
M 6 HOH A 13 513 34 HOH HOH . 
M 6 HOH A 14 514 31 HOH HOH . 
M 6 HOH A 15 515 61 HOH HOH . 
M 6 HOH A 16 516 67 HOH HOH . 
M 6 HOH A 17 517 5 HOH HOH . 
M 6 HOH A 18 518 2 HOH HOH . 
M 6 HOH A 19 519 17 HOH HOH . 
M 6 HOH A 20 520 22 HOH HOH . 
M 6 HOH A 21 521 37 HOH HOH . 
M 6 HOH A 22 522 80 HOH HOH . 
M 6 HOH A 23 523 15 HOH HOH . 
M 6 HOH A 24 524 121 HOH HOH . 
M 6 HOH A 25 525 81 HOH HOH . 
M 6 HOH A 26 526 115 HOH HOH . 
M 6 HOH A 27 527 76 HOH HOH . 
M 6 HOH A 28 528 24 HOH HOH . 
M 6 HOH A 29 529 35 HOH HOH . 
M 6 HOH A 30 530 119 HOH HOH . 
M 6 HOH A 31 531 83 HOH HOH . 
M 6 HOH A 32 532 52 HOH HOH . 
M 6 HOH A 33 533 84 HOH HOH . 
M 6 HOH A 34 534 42 HOH HOH . 
M 6 HOH A 35 535 58 HOH HOH . 
M 6 HOH A 36 536 36 HOH HOH . 
M 6 HOH A 37 537 55 HOH HOH . 
M 6 HOH A 38 538 122 HOH HOH . 
M 6 HOH A 39 539 13 HOH HOH . 
M 6 HOH A 40 540 114 HOH HOH . 
M 6 HOH A 41 541 39 HOH HOH . 
M 6 HOH A 42 542 27 HOH HOH . 
N 6 HOH B 1 501 89 HOH HOH . 
N 6 HOH B 2 502 8 HOH HOH . 
N 6 HOH B 3 503 85 HOH HOH . 
N 6 HOH B 4 504 66 HOH HOH . 
N 6 HOH B 5 505 82 HOH HOH . 
N 6 HOH B 6 506 46 HOH HOH . 
N 6 HOH B 7 507 113 HOH HOH . 
N 6 HOH B 8 508 70 HOH HOH . 
N 6 HOH B 9 509 20 HOH HOH . 
N 6 HOH B 10 510 109 HOH HOH . 
N 6 HOH B 11 511 90 HOH HOH . 
N 6 HOH B 12 512 32 HOH HOH . 
N 6 HOH B 13 513 12 HOH HOH . 
N 6 HOH B 14 514 41 HOH HOH . 
N 6 HOH B 15 515 88 HOH HOH . 
N 6 HOH B 16 516 106 HOH HOH . 
N 6 HOH B 17 517 6 HOH HOH . 
N 6 HOH B 18 518 118 HOH HOH . 
N 6 HOH B 19 519 103 HOH HOH . 
N 6 HOH B 20 520 63 HOH HOH . 
N 6 HOH B 21 521 111 HOH HOH . 
N 6 HOH B 22 522 30 HOH HOH . 
N 6 HOH B 23 523 33 HOH HOH . 
N 6 HOH B 24 524 68 HOH HOH . 
N 6 HOH B 25 525 28 HOH HOH . 
N 6 HOH B 26 526 19 HOH HOH . 
N 6 HOH B 27 527 16 HOH HOH . 
N 6 HOH B 28 528 64 HOH HOH . 
N 6 HOH B 29 529 86 HOH HOH . 
N 6 HOH B 30 530 104 HOH HOH . 
N 6 HOH B 31 531 7 HOH HOH . 
N 6 HOH B 32 532 101 HOH HOH . 
N 6 HOH B 33 533 56 HOH HOH . 
N 6 HOH B 34 534 124 HOH HOH . 
N 6 HOH B 35 535 74 HOH HOH . 
N 6 HOH B 36 536 92 HOH HOH . 
N 6 HOH B 37 537 72 HOH HOH . 
N 6 HOH B 38 538 59 HOH HOH . 
N 6 HOH B 39 539 40 HOH HOH . 
N 6 HOH B 40 540 62 HOH HOH . 
N 6 HOH B 41 541 125 HOH HOH . 
N 6 HOH B 42 542 112 HOH HOH . 
N 6 HOH B 43 543 120 HOH HOH . 
N 6 HOH B 44 544 99 HOH HOH . 
N 6 HOH B 45 545 105 HOH HOH . 
O 6 HOH C 1 401 73 HOH HOH . 
O 6 HOH C 2 402 23 HOH HOH . 
O 6 HOH C 3 403 57 HOH HOH . 
O 6 HOH C 4 404 26 HOH HOH . 
O 6 HOH C 5 405 110 HOH HOH . 
O 6 HOH C 6 406 98 HOH HOH . 
O 6 HOH C 7 407 18 HOH HOH . 
O 6 HOH C 8 408 49 HOH HOH . 
O 6 HOH C 9 409 91 HOH HOH . 
O 6 HOH C 10 410 25 HOH HOH . 
O 6 HOH C 11 411 43 HOH HOH . 
O 6 HOH C 12 412 1 HOH HOH . 
O 6 HOH C 13 413 50 HOH HOH . 
O 6 HOH C 14 414 4 HOH HOH . 
O 6 HOH C 15 415 116 HOH HOH . 
O 6 HOH C 16 416 38 HOH HOH . 
O 6 HOH C 17 417 60 HOH HOH . 
O 6 HOH C 18 418 69 HOH HOH . 
O 6 HOH C 19 419 77 HOH HOH . 
O 6 HOH C 20 420 48 HOH HOH . 
O 6 HOH C 21 421 94 HOH HOH . 
O 6 HOH C 22 422 54 HOH HOH . 
O 6 HOH C 23 423 51 HOH HOH . 
O 6 HOH C 24 424 100 HOH HOH . 
P 6 HOH D 1 401 102 HOH HOH . 
P 6 HOH D 2 402 45 HOH HOH . 
P 6 HOH D 3 403 29 HOH HOH . 
P 6 HOH D 4 404 14 HOH HOH . 
P 6 HOH D 5 405 71 HOH HOH . 
P 6 HOH D 6 406 78 HOH HOH . 
P 6 HOH D 7 407 95 HOH HOH . 
P 6 HOH D 8 408 93 HOH HOH . 
P 6 HOH D 9 409 44 HOH HOH . 
P 6 HOH D 10 410 75 HOH HOH . 
P 6 HOH D 11 411 107 HOH HOH . 
P 6 HOH D 12 412 108 HOH HOH . 
P 6 HOH D 13 413 123 HOH HOH . 
P 6 HOH D 14 414 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S PYV . . . I 4 -21.984 -3.493 30.267 1 38.74 ? S PYV 301 C 1 
HETATM 2 BR BR PYV . . . I 4 -24.121 -0.64 35.679 1 66.42 ? BR PYV 301 C 1 
HETATM 3 C C1 PYV . . . I 4 -23.447 -1.703 34.203 1 60.14 ? C1 PYV 301 C 1 
HETATM 4 N N1 PYV . . . I 4 -23.033 -4.756 29.787 1 41.85 ? N1 PYV 301 C 1 
HETATM 5 O O1 PYV . . . I 4 -20.587 -3.929 30.288 1 33.37 ? O1 PYV 301 C 1 
HETATM 6 C C2 PYV . . . I 4 -23.04 -3.049 34.25 1 57.54 ? C2 PYV 301 C 1 
HETATM 7 N N2 PYV . . . I 4 -25.672 -6.38 30.757 1 53.89 ? N2 PYV 301 C 1 
HETATM 8 O O2 PYV . . . I 4 -21.945 -2.404 29.288 1 42.2 ? O2 PYV 301 C 1 
HETATM 9 C C3 PYV . . . I 4 -22.584 -3.66 33.11 1 55.99 ? C3 PYV 301 C 1 
HETATM 10 C C4 PYV . . . I 4 -22.527 -2.945 31.906 1 51.02 ? C4 PYV 301 C 1 
HETATM 11 C C5 PYV . . . I 4 -22.929 -1.618 31.851 1 53.9 ? C5 PYV 301 C 1 
HETATM 12 C C6 PYV . . . I 4 -23.39 -0.995 33.007 1 55.59 ? C6 PYV 301 C 1 
HETATM 13 C C7 PYV . . . I 4 -22.177 -5.006 33.132 1 55.68 ? C7 PYV 301 C 1 
HETATM 14 C C8 PYV . . . I 4 -22.231 -5.725 34.315 1 56.5 ? C8 PYV 301 C 1 
HETATM 15 C C9 PYV . . . I 4 -22.688 -5.108 35.472 1 60.23 ? C9 PYV 301 C 1 
HETATM 16 C C10 PYV . . . I 4 -23.094 -3.779 35.451 1 58.78 ? C10 PYV 301 C 1 
HETATM 17 C C11 PYV . . . I 4 -24.458 -4.504 29.655 1 49.22 ? C11 PYV 301 C 1 
HETATM 18 C C12 PYV . . . I 4 -25.258 -5.096 30.815 1 51.49 ? C12 PYV 301 C 1 
HETATM 19 C C13 PYV . . . I 4 -26.385 -6.908 31.777 1 57.64 ? C13 PYV 301 C 1 
HETATM 20 C C14 PYV . . . I 4 -26.701 -6.134 32.88 1 58.27 ? C14 PYV 301 C 1 
HETATM 21 C C15 PYV . . . I 4 -26.293 -4.843 32.939 1 56.66 ? C15 PYV 301 C 1 
HETATM 22 C C16 PYV . . . I 4 -25.58 -4.315 31.915 1 56.12 ? C16 PYV 301 C 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           22 
#