data_5ZCU # _model_server_result.job_id pvvam4i-lhf3oWbVkoRiSw _model_server_result.datetime_utc '2024-11-14 03:02:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 5ZCU # _exptl.entry_id 5ZCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZCU _cell.length_a 75.036 _cell.length_b 134.577 _cell.length_c 190.267 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,J,M,O 1 1 B,D,G,H,K,L,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 61 A ASP 118 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc2 A OD1 ASP 61 A ASP 118 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 A O GLY 62 A GLY 119 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 A OD1 ASP 249 A ASP 306 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc5 A OD2 ASP 311 A ASP 368 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc6 E MG MG . A MG 401 1_555 M O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc7 E MG MG . A MG 401 1_555 M O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc8 E MG MG . A MG 401 1_555 O O HOH . C HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc9 F MG MG . A MG 402 1_555 M O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc10 F MG MG . A MG 402 1_555 M O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc11 F MG MG . A MG 402 1_555 O O HOH . C HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc12 B OD2 ASP 61 B ASP 118 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc13 B OD1 ASP 61 B ASP 118 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc14 B O GLY 62 B GLY 119 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc15 B OD1 ASP 249 B ASP 306 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc16 B OD2 ASP 311 B ASP 368 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc17 G MG MG . B MG 401 1_555 N O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc18 G MG MG . B MG 401 1_555 N O HOH . B HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc19 H MG MG . B MG 402 1_555 N O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc20 H MG MG . B MG 402 1_555 N O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ZCU _atom_sites.fract_transf_matrix[1][1] 0.013327 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 401 1 MG MG . F 3 MG A 1 402 2 MG MG . G 3 MG B 1 401 1 MG MG . H 3 MG B 1 402 2 MG MG . I 4 PYV C 1 301 1 PYV PYV . J 5 SO4 C 1 302 1 SO4 SO4 . K 4 PYV D 1 301 1 PYV PYV . L 5 SO4 D 1 302 2 SO4 SO4 . M 6 HOH A 1 501 21 HOH HOH . M 6 HOH A 2 502 97 HOH HOH . M 6 HOH A 3 503 117 HOH HOH . M 6 HOH A 4 504 87 HOH HOH . M 6 HOH A 5 505 47 HOH HOH . M 6 HOH A 6 506 11 HOH HOH . M 6 HOH A 7 507 53 HOH HOH . M 6 HOH A 8 508 9 HOH HOH . M 6 HOH A 9 509 3 HOH HOH . M 6 HOH A 10 510 79 HOH HOH . M 6 HOH A 11 511 65 HOH HOH . M 6 HOH A 12 512 10 HOH HOH . M 6 HOH A 13 513 34 HOH HOH . M 6 HOH A 14 514 31 HOH HOH . M 6 HOH A 15 515 61 HOH HOH . M 6 HOH A 16 516 67 HOH HOH . M 6 HOH A 17 517 5 HOH HOH . M 6 HOH A 18 518 2 HOH HOH . M 6 HOH A 19 519 17 HOH HOH . M 6 HOH A 20 520 22 HOH HOH . M 6 HOH A 21 521 37 HOH HOH . M 6 HOH A 22 522 80 HOH HOH . M 6 HOH A 23 523 15 HOH HOH . M 6 HOH A 24 524 121 HOH HOH . M 6 HOH A 25 525 81 HOH HOH . M 6 HOH A 26 526 115 HOH HOH . M 6 HOH A 27 527 76 HOH HOH . M 6 HOH A 28 528 24 HOH HOH . M 6 HOH A 29 529 35 HOH HOH . M 6 HOH A 30 530 119 HOH HOH . M 6 HOH A 31 531 83 HOH HOH . M 6 HOH A 32 532 52 HOH HOH . M 6 HOH A 33 533 84 HOH HOH . M 6 HOH A 34 534 42 HOH HOH . M 6 HOH A 35 535 58 HOH HOH . M 6 HOH A 36 536 36 HOH HOH . M 6 HOH A 37 537 55 HOH HOH . M 6 HOH A 38 538 122 HOH HOH . M 6 HOH A 39 539 13 HOH HOH . M 6 HOH A 40 540 114 HOH HOH . M 6 HOH A 41 541 39 HOH HOH . M 6 HOH A 42 542 27 HOH HOH . N 6 HOH B 1 501 89 HOH HOH . N 6 HOH B 2 502 8 HOH HOH . N 6 HOH B 3 503 85 HOH HOH . N 6 HOH B 4 504 66 HOH HOH . N 6 HOH B 5 505 82 HOH HOH . N 6 HOH B 6 506 46 HOH HOH . N 6 HOH B 7 507 113 HOH HOH . N 6 HOH B 8 508 70 HOH HOH . N 6 HOH B 9 509 20 HOH HOH . N 6 HOH B 10 510 109 HOH HOH . N 6 HOH B 11 511 90 HOH HOH . N 6 HOH B 12 512 32 HOH HOH . N 6 HOH B 13 513 12 HOH HOH . N 6 HOH B 14 514 41 HOH HOH . N 6 HOH B 15 515 88 HOH HOH . N 6 HOH B 16 516 106 HOH HOH . N 6 HOH B 17 517 6 HOH HOH . N 6 HOH B 18 518 118 HOH HOH . N 6 HOH B 19 519 103 HOH HOH . N 6 HOH B 20 520 63 HOH HOH . N 6 HOH B 21 521 111 HOH HOH . N 6 HOH B 22 522 30 HOH HOH . N 6 HOH B 23 523 33 HOH HOH . N 6 HOH B 24 524 68 HOH HOH . N 6 HOH B 25 525 28 HOH HOH . N 6 HOH B 26 526 19 HOH HOH . N 6 HOH B 27 527 16 HOH HOH . N 6 HOH B 28 528 64 HOH HOH . N 6 HOH B 29 529 86 HOH HOH . N 6 HOH B 30 530 104 HOH HOH . N 6 HOH B 31 531 7 HOH HOH . N 6 HOH B 32 532 101 HOH HOH . N 6 HOH B 33 533 56 HOH HOH . N 6 HOH B 34 534 124 HOH HOH . N 6 HOH B 35 535 74 HOH HOH . N 6 HOH B 36 536 92 HOH HOH . N 6 HOH B 37 537 72 HOH HOH . N 6 HOH B 38 538 59 HOH HOH . N 6 HOH B 39 539 40 HOH HOH . N 6 HOH B 40 540 62 HOH HOH . N 6 HOH B 41 541 125 HOH HOH . N 6 HOH B 42 542 112 HOH HOH . N 6 HOH B 43 543 120 HOH HOH . N 6 HOH B 44 544 99 HOH HOH . N 6 HOH B 45 545 105 HOH HOH . O 6 HOH C 1 401 73 HOH HOH . O 6 HOH C 2 402 23 HOH HOH . O 6 HOH C 3 403 57 HOH HOH . O 6 HOH C 4 404 26 HOH HOH . O 6 HOH C 5 405 110 HOH HOH . O 6 HOH C 6 406 98 HOH HOH . O 6 HOH C 7 407 18 HOH HOH . O 6 HOH C 8 408 49 HOH HOH . O 6 HOH C 9 409 91 HOH HOH . O 6 HOH C 10 410 25 HOH HOH . O 6 HOH C 11 411 43 HOH HOH . O 6 HOH C 12 412 1 HOH HOH . O 6 HOH C 13 413 50 HOH HOH . O 6 HOH C 14 414 4 HOH HOH . O 6 HOH C 15 415 116 HOH HOH . O 6 HOH C 16 416 38 HOH HOH . O 6 HOH C 17 417 60 HOH HOH . O 6 HOH C 18 418 69 HOH HOH . O 6 HOH C 19 419 77 HOH HOH . O 6 HOH C 20 420 48 HOH HOH . O 6 HOH C 21 421 94 HOH HOH . O 6 HOH C 22 422 54 HOH HOH . O 6 HOH C 23 423 51 HOH HOH . O 6 HOH C 24 424 100 HOH HOH . P 6 HOH D 1 401 102 HOH HOH . P 6 HOH D 2 402 45 HOH HOH . P 6 HOH D 3 403 29 HOH HOH . P 6 HOH D 4 404 14 HOH HOH . P 6 HOH D 5 405 71 HOH HOH . P 6 HOH D 6 406 78 HOH HOH . P 6 HOH D 7 407 95 HOH HOH . P 6 HOH D 8 408 93 HOH HOH . P 6 HOH D 9 409 44 HOH HOH . P 6 HOH D 10 410 75 HOH HOH . P 6 HOH D 11 411 107 HOH HOH . P 6 HOH D 12 412 108 HOH HOH . P 6 HOH D 13 413 123 HOH HOH . P 6 HOH D 14 414 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -12.409 _atom_site.Cartn_y 14.771 _atom_site.Cartn_z 85.868 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 230 _model_server_stats.create_model_time_ms 128 _model_server_stats.query_time_ms 392 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #