data_5ZE4 # _model_server_result.job_id Tg1l5uf00glG2BpMF27nrA _model_server_result.datetime_utc '2024-11-04 22:50:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ze4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5ZE4 # _exptl.entry_id 5ZE4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZE4 _cell.length_a 135.467 _cell.length_b 135.467 _cell.length_c 65.978 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 65 A CYS 66 1_555 B FE1 FES . A FES 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc2 A SG CYS 138 A CYS 139 1_555 B FE1 FES . A FES 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc3 A OD2 ASP 139 A ASP 140 1_555 G MG MG . A MG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 A SG CYS 210 A CYS 211 1_555 B FE2 FES . A FES 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 A OE1 GLU 462 A GLU 463 1_555 G MG MG . A MG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc6 B FE2 FES . A FES 601 1_555 F OXT ACT . A ACT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 89 n n FE1 S2 FES sing 90 n n FE2 S1 FES sing 91 n n FE2 S2 FES sing 92 n n # _atom_sites.entry_id 5ZE4 _atom_sites.fract_transf_matrix[1][1] 0.007382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 601 1 FES FES . C 3 SO4 A 1 602 1 SO4 SO4 . D 3 SO4 A 1 603 2 SO4 SO4 . E 3 SO4 A 1 604 3 SO4 SO4 . F 4 ACT A 1 605 1 ACT ACT . G 5 MG A 1 606 1 MG MG . H 6 HOH A 1 701 8 HOH HOH . H 6 HOH A 2 702 140 HOH HOH . H 6 HOH A 3 703 138 HOH HOH . H 6 HOH A 4 704 14 HOH HOH . H 6 HOH A 5 705 75 HOH HOH . H 6 HOH A 6 706 49 HOH HOH . H 6 HOH A 7 707 136 HOH HOH . H 6 HOH A 8 708 38 HOH HOH . H 6 HOH A 9 709 55 HOH HOH . H 6 HOH A 10 710 61 HOH HOH . H 6 HOH A 11 711 87 HOH HOH . H 6 HOH A 12 712 134 HOH HOH . H 6 HOH A 13 713 107 HOH HOH . H 6 HOH A 14 714 77 HOH HOH . H 6 HOH A 15 715 15 HOH HOH . H 6 HOH A 16 716 73 HOH HOH . H 6 HOH A 17 717 35 HOH HOH . H 6 HOH A 18 718 16 HOH HOH . H 6 HOH A 19 719 92 HOH HOH . H 6 HOH A 20 720 68 HOH HOH . H 6 HOH A 21 721 137 HOH HOH . H 6 HOH A 22 722 135 HOH HOH . H 6 HOH A 23 723 98 HOH HOH . H 6 HOH A 24 724 76 HOH HOH . H 6 HOH A 25 725 34 HOH HOH . H 6 HOH A 26 726 93 HOH HOH . H 6 HOH A 27 727 45 HOH HOH . H 6 HOH A 28 728 30 HOH HOH . H 6 HOH A 29 729 110 HOH HOH . H 6 HOH A 30 730 69 HOH HOH . H 6 HOH A 31 731 108 HOH HOH . H 6 HOH A 32 732 9 HOH HOH . H 6 HOH A 33 733 46 HOH HOH . H 6 HOH A 34 734 26 HOH HOH . H 6 HOH A 35 735 124 HOH HOH . H 6 HOH A 36 736 58 HOH HOH . H 6 HOH A 37 737 82 HOH HOH . H 6 HOH A 38 738 83 HOH HOH . H 6 HOH A 39 739 54 HOH HOH . H 6 HOH A 40 740 123 HOH HOH . H 6 HOH A 41 741 11 HOH HOH . H 6 HOH A 42 742 48 HOH HOH . H 6 HOH A 43 743 74 HOH HOH . H 6 HOH A 44 744 111 HOH HOH . H 6 HOH A 45 745 23 HOH HOH . H 6 HOH A 46 746 71 HOH HOH . H 6 HOH A 47 747 125 HOH HOH . H 6 HOH A 48 748 72 HOH HOH . H 6 HOH A 49 749 20 HOH HOH . H 6 HOH A 50 750 89 HOH HOH . H 6 HOH A 51 751 141 HOH HOH . H 6 HOH A 52 752 60 HOH HOH . H 6 HOH A 53 753 44 HOH HOH . H 6 HOH A 54 754 139 HOH HOH . H 6 HOH A 55 755 85 HOH HOH . H 6 HOH A 56 756 79 HOH HOH . H 6 HOH A 57 757 3 HOH HOH . H 6 HOH A 58 758 116 HOH HOH . H 6 HOH A 59 759 51 HOH HOH . H 6 HOH A 60 760 112 HOH HOH . H 6 HOH A 61 761 127 HOH HOH . H 6 HOH A 62 762 19 HOH HOH . H 6 HOH A 63 763 120 HOH HOH . H 6 HOH A 64 764 1 HOH HOH . H 6 HOH A 65 765 88 HOH HOH . H 6 HOH A 66 766 126 HOH HOH . H 6 HOH A 67 767 53 HOH HOH . H 6 HOH A 68 768 91 HOH HOH . H 6 HOH A 69 769 65 HOH HOH . H 6 HOH A 70 770 86 HOH HOH . H 6 HOH A 71 771 109 HOH HOH . H 6 HOH A 72 772 113 HOH HOH . H 6 HOH A 73 773 133 HOH HOH . H 6 HOH A 74 774 27 HOH HOH . H 6 HOH A 75 775 67 HOH HOH . H 6 HOH A 76 776 37 HOH HOH . H 6 HOH A 77 777 119 HOH HOH . H 6 HOH A 78 778 99 HOH HOH . H 6 HOH A 79 779 5 HOH HOH . H 6 HOH A 80 780 52 HOH HOH . H 6 HOH A 81 781 100 HOH HOH . H 6 HOH A 82 782 39 HOH HOH . H 6 HOH A 83 783 81 HOH HOH . H 6 HOH A 84 784 62 HOH HOH . H 6 HOH A 85 785 115 HOH HOH . H 6 HOH A 86 786 64 HOH HOH . H 6 HOH A 87 787 106 HOH HOH . H 6 HOH A 88 788 7 HOH HOH . H 6 HOH A 89 789 80 HOH HOH . H 6 HOH A 90 790 130 HOH HOH . H 6 HOH A 91 791 63 HOH HOH . H 6 HOH A 92 792 114 HOH HOH . H 6 HOH A 93 793 94 HOH HOH . H 6 HOH A 94 794 102 HOH HOH . H 6 HOH A 95 795 4 HOH HOH . H 6 HOH A 96 796 122 HOH HOH . H 6 HOH A 97 797 66 HOH HOH . H 6 HOH A 98 798 90 HOH HOH . H 6 HOH A 99 799 103 HOH HOH . H 6 HOH A 100 800 78 HOH HOH . H 6 HOH A 101 801 57 HOH HOH . H 6 HOH A 102 802 142 HOH HOH . H 6 HOH A 103 803 97 HOH HOH . H 6 HOH A 104 804 84 HOH HOH . H 6 HOH A 105 805 95 HOH HOH . H 6 HOH A 106 806 101 HOH HOH . H 6 HOH A 107 807 6 HOH HOH . H 6 HOH A 108 808 118 HOH HOH . H 6 HOH A 109 809 104 HOH HOH . H 6 HOH A 110 810 128 HOH HOH . H 6 HOH A 111 811 41 HOH HOH . H 6 HOH A 112 812 24 HOH HOH . H 6 HOH A 113 813 96 HOH HOH . H 6 HOH A 114 814 40 HOH HOH . H 6 HOH A 115 815 105 HOH HOH . H 6 HOH A 116 816 131 HOH HOH . H 6 HOH A 117 817 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . B 2 40.847 -20.61 -7.723 1 26.23 ? FE1 FES 601 A 1 HETATM 2 FE FE2 FES . . . B 2 41.693 -18.628 -9.182 1 32.59 ? FE2 FES 601 A 1 HETATM 3 S S1 FES . . . B 2 41.976 -18.912 -6.908 1 26.92 ? S1 FES 601 A 1 HETATM 4 S S2 FES . . . B 2 40.213 -20.217 -9.916 1 26.91 ? S2 FES 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #