data_5ZEA
#
_model_server_result.job_id            dQ7NUs6TSopuETR_L2sqDA 
_model_server_result.datetime_utc      '2024-10-15 16:24:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zea 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":603}' 
#
_entry.id    5ZEA 
#
_exptl.entry_id    5ZEA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.39 
_cell.angle_gamma         90 
_cell.entry_id            5ZEA 
_cell.length_a            180.84 
_cell.length_b            107.77 
_cell.length_c            193.37 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZEA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,R,S,T,U,V,W,X,DA,EA,FA,GA,HA,IA 1 1 
G,H,I,J,K,L,Y,Z,AA,BA,CA,JA,KA,LA,MA,NA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5ZEA 
_atom_sites.fract_transf_matrix[1][1]    0.00553 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000914 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009279 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005242 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 GOL A 1 601 7 GOL GOL . 
N 3 GOL A 1 602 9 GOL GOL . 
O 3 GOL A 1 603 10 GOL GOL . 
P 3 GOL A 1 604 12 GOL GOL . 
Q 3 GOL A 1 605 13 GOL GOL . 
R 3 GOL A 1 606 14 GOL GOL . 
S 3 GOL C 1 601 5 GOL GOL . 
T 3 GOL D 1 501 1 GOL GOL . 
U 3 GOL D 1 502 6 GOL GOL . 
V 3 GOL D 1 503 15 GOL GOL . 
W 3 GOL D 1 504 16 GOL GOL . 
X 3 GOL D 1 505 17 GOL GOL . 
Y 3 GOL G 1 601 2 GOL GOL . 
Z 3 GOL G 1 602 4 GOL GOL . 
AA 3 GOL G 1 603 11 GOL GOL . 
BA 3 GOL H 1 601 3 GOL GOL . 
CA 3 GOL K 1 501 8 GOL GOL . 
DA 4 HOH A 1 701 279 HOH HOH . 
DA 4 HOH A 2 702 39 HOH HOH . 
DA 4 HOH A 3 703 74 HOH HOH . 
DA 4 HOH A 4 704 24 HOH HOH . 
DA 4 HOH A 5 705 277 HOH HOH . 
DA 4 HOH A 6 706 97 HOH HOH . 
DA 4 HOH A 7 707 11 HOH HOH . 
DA 4 HOH A 8 708 68 HOH HOH . 
DA 4 HOH A 9 709 111 HOH HOH . 
DA 4 HOH A 10 710 278 HOH HOH . 
DA 4 HOH A 11 711 78 HOH HOH . 
DA 4 HOH A 12 712 267 HOH HOH . 
DA 4 HOH A 13 713 133 HOH HOH . 
DA 4 HOH A 14 714 230 HOH HOH . 
DA 4 HOH A 15 715 288 HOH HOH . 
DA 4 HOH A 16 716 284 HOH HOH . 
DA 4 HOH A 17 717 274 HOH HOH . 
DA 4 HOH A 18 718 275 HOH HOH . 
DA 4 HOH A 19 719 280 HOH HOH . 
DA 4 HOH A 20 720 281 HOH HOH . 
DA 4 HOH A 21 721 286 HOH HOH . 
DA 4 HOH A 22 722 282 HOH HOH . 
DA 4 HOH A 23 723 270 HOH HOH . 
DA 4 HOH A 24 724 269 HOH HOH . 
DA 4 HOH A 25 725 272 HOH HOH . 
DA 4 HOH A 26 726 276 HOH HOH . 
DA 4 HOH A 27 727 287 HOH HOH . 
DA 4 HOH A 28 728 271 HOH HOH . 
DA 4 HOH A 29 729 289 HOH HOH . 
DA 4 HOH A 30 730 273 HOH HOH . 
EA 4 HOH B 1 601 89 HOH HOH . 
EA 4 HOH B 2 602 9 HOH HOH . 
EA 4 HOH B 3 603 290 HOH HOH . 
FA 4 HOH C 1 701 297 HOH HOH . 
FA 4 HOH C 2 702 100 HOH HOH . 
FA 4 HOH C 3 703 224 HOH HOH . 
FA 4 HOH C 4 704 242 HOH HOH . 
FA 4 HOH C 5 705 86 HOH HOH . 
FA 4 HOH C 6 706 76 HOH HOH . 
FA 4 HOH C 7 707 62 HOH HOH . 
FA 4 HOH C 8 708 10 HOH HOH . 
GA 4 HOH D 1 601 96 HOH HOH . 
GA 4 HOH D 2 602 118 HOH HOH . 
GA 4 HOH D 3 603 73 HOH HOH . 
GA 4 HOH D 4 604 120 HOH HOH . 
GA 4 HOH D 5 605 167 HOH HOH . 
GA 4 HOH D 6 606 212 HOH HOH . 
GA 4 HOH D 7 607 291 HOH HOH . 
GA 4 HOH D 8 608 266 HOH HOH . 
GA 4 HOH D 9 609 268 HOH HOH . 
HA 4 HOH E 1 501 188 HOH HOH . 
HA 4 HOH E 2 502 184 HOH HOH . 
HA 4 HOH E 3 503 178 HOH HOH . 
HA 4 HOH E 4 504 154 HOH HOH . 
HA 4 HOH E 5 505 42 HOH HOH . 
HA 4 HOH E 6 506 283 HOH HOH . 
HA 4 HOH E 7 507 125 HOH HOH . 
HA 4 HOH E 8 508 26 HOH HOH . 
HA 4 HOH E 9 509 285 HOH HOH . 
IA 4 HOH F 1 501 15 HOH HOH . 
IA 4 HOH F 2 502 166 HOH HOH . 
IA 4 HOH F 3 503 221 HOH HOH . 
JA 4 HOH G 1 701 77 HOH HOH . 
JA 4 HOH G 2 702 3 HOH HOH . 
JA 4 HOH G 3 703 36 HOH HOH . 
JA 4 HOH G 4 704 144 HOH HOH . 
JA 4 HOH G 5 705 79 HOH HOH . 
KA 4 HOH H 1 701 165 HOH HOH . 
KA 4 HOH H 2 702 211 HOH HOH . 
KA 4 HOH H 3 703 241 HOH HOH . 
KA 4 HOH H 4 704 119 HOH HOH . 
KA 4 HOH H 5 705 295 HOH HOH . 
KA 4 HOH H 6 706 228 HOH HOH . 
KA 4 HOH H 7 707 28 HOH HOH . 
KA 4 HOH H 8 708 294 HOH HOH . 
KA 4 HOH H 9 709 293 HOH HOH . 
KA 4 HOH H 10 710 292 HOH HOH . 
LA 4 HOH I 1 601 65 HOH HOH . 
LA 4 HOH I 2 602 58 HOH HOH . 
LA 4 HOH I 3 603 250 HOH HOH . 
LA 4 HOH I 4 604 116 HOH HOH . 
LA 4 HOH I 5 605 236 HOH HOH . 
LA 4 HOH I 6 606 54 HOH HOH . 
LA 4 HOH I 7 607 53 HOH HOH . 
LA 4 HOH I 8 608 252 HOH HOH . 
MA 4 HOH J 1 501 193 HOH HOH . 
MA 4 HOH J 2 502 59 HOH HOH . 
MA 4 HOH J 3 503 91 HOH HOH . 
MA 4 HOH J 4 504 215 HOH HOH . 
MA 4 HOH J 5 505 1 HOH HOH . 
MA 4 HOH J 6 506 179 HOH HOH . 
MA 4 HOH J 7 507 2 HOH HOH . 
MA 4 HOH J 8 508 296 HOH HOH . 
MA 4 HOH J 9 509 17 HOH HOH . 
NA 4 HOH K 1 601 38 HOH HOH . 
NA 4 HOH K 2 602 43 HOH HOH . 
NA 4 HOH K 3 603 220 HOH HOH . 
NA 4 HOH K 4 604 34 HOH HOH . 
NA 4 HOH K 5 605 110 HOH HOH . 
NA 4 HOH K 6 606 196 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . O 3 -21.355 -25.428 60.415 1 96.14 ? C1 GOL 603 A 1 
HETATM 2 O O1 GOL . . . O 3 -22.323 -25.042 59.49 1 96.98 ? O1 GOL 603 A 1 
HETATM 3 C C2 GOL . . . O 3 -20.92 -24.156 61.184 1 95.43 ? C2 GOL 603 A 1 
HETATM 4 O O2 GOL . . . O 3 -22.003 -23.393 61.594 1 96.05 ? O2 GOL 603 A 1 
HETATM 5 C C3 GOL . . . O 3 -20.106 -24.683 62.381 1 94.2 ? C3 GOL 603 A 1 
HETATM 6 O O3 GOL . . . O 3 -19.788 -23.574 63.16 1 93.46 ? O3 GOL 603 A 1 
#
_model_server_stats.io_time_ms              95 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    462 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
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