data_5ZEH
#
_model_server_result.job_id            T7AXEv722Rmya3qaZFdpDg 
_model_server_result.datetime_utc      '2024-11-26 16:23:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zeh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5ZEH 
#
_exptl.entry_id    5ZEH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              132.161 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-ornithine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZEH 
_cell.length_a            87.605 
_cell.length_b            97.494 
_cell.length_c            133.255 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZEH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 114 A HIS 98 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 A OD2 ASP 140 A ASP 124 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc3 A OD1 ASP 140 A ASP 124 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? 
metalc ? metalc4 A ND1 HIS 142 A HIS 126 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc5 A OD2 ASP 144 A ASP 128 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc6 A OD2 ASP 241 A ASP 225 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc7 A OD2 ASP 241 A ASP 225 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc8 A OD1 ASP 243 A ASP 227 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc9 A OD2 ASP 243 A ASP 227 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc10 D MN MN . A MN 302 1_555 J O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc11 D MN MN . A MN 302 1_555 J O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc12 E MN MN . A MN 303 1_555 J O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc13 B ND1 HIS 114 B HIS 98 1_555 H MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc14 B OD2 ASP 140 B ASP 124 1_555 H MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc15 B OD1 ASP 140 B ASP 124 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc16 B ND1 HIS 142 B HIS 126 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc17 B OD2 ASP 144 B ASP 128 1_555 H MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc18 B OD2 ASP 241 B ASP 225 1_555 H MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc19 B OD2 ASP 241 B ASP 225 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc20 B OD1 ASP 243 B ASP 227 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc21 B OD2 ASP 243 B ASP 227 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc22 H MN MN . B MN 302 1_555 K O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc23 I MN MN . B MN 303 1_555 K O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
#
_chem_comp.formula           'C5 H12 N2 O2' 
_chem_comp.formula_weight    132.161 
_chem_comp.id                ORN 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              L-ornithine 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ORN sing 246 n n 
N H ORN sing 247 n n 
N H2 ORN sing 248 n n 
CA CB ORN sing 249 n n 
CA C ORN sing 250 n n 
CA HA ORN sing 251 n n 
CB CG ORN sing 252 n n 
CB HB2 ORN sing 253 n n 
CB HB3 ORN sing 254 n n 
CG CD ORN sing 255 n n 
CG HG2 ORN sing 256 n n 
CG HG3 ORN sing 257 n n 
CD NE ORN sing 258 n n 
CD HD2 ORN sing 259 n n 
CD HD3 ORN sing 260 n n 
NE HE1 ORN sing 261 n n 
NE HE2 ORN sing 262 n n 
C O ORN doub 263 n n 
C OXT ORN sing 264 n n 
OXT HXT ORN sing 265 n n 
#
_atom_sites.entry_id                     5ZEH 
_atom_sites.fract_transf_matrix[1][1]    0.011415 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010257 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ORN A 1 301 350 ORN ORN . 
D 3 MN A 1 302 400 MN MN . 
E 3 MN A 1 303 401 MN MN . 
F 4 EDO A 1 304 450 EDO EDO . 
G 2 ORN B 1 301 350 ORN ORN . 
H 3 MN B 1 302 400 MN MN . 
I 3 MN B 1 303 401 MN MN . 
J 5 HOH A 1 401 5 HOH HOH . 
J 5 HOH A 2 402 22 HOH HOH . 
J 5 HOH A 3 403 1 HOH HOH . 
J 5 HOH A 4 404 69 HOH HOH . 
J 5 HOH A 5 405 21 HOH HOH . 
J 5 HOH A 6 406 2 HOH HOH . 
J 5 HOH A 7 407 60 HOH HOH . 
J 5 HOH A 8 408 37 HOH HOH . 
J 5 HOH A 9 409 40 HOH HOH . 
J 5 HOH A 10 410 4 HOH HOH . 
J 5 HOH A 11 411 10 HOH HOH . 
J 5 HOH A 12 412 59 HOH HOH . 
J 5 HOH A 13 413 36 HOH HOH . 
J 5 HOH A 14 414 14 HOH HOH . 
J 5 HOH A 15 415 55 HOH HOH . 
J 5 HOH A 16 416 54 HOH HOH . 
J 5 HOH A 17 417 41 HOH HOH . 
J 5 HOH A 18 418 15 HOH HOH . 
J 5 HOH A 19 419 58 HOH HOH . 
J 5 HOH A 20 420 70 HOH HOH . 
J 5 HOH A 21 421 23 HOH HOH . 
J 5 HOH A 22 422 19 HOH HOH . 
J 5 HOH A 23 423 8 HOH HOH . 
J 5 HOH A 24 424 56 HOH HOH . 
J 5 HOH A 25 425 16 HOH HOH . 
J 5 HOH A 26 426 43 HOH HOH . 
J 5 HOH A 27 427 42 HOH HOH . 
J 5 HOH A 28 428 17 HOH HOH . 
J 5 HOH A 29 429 45 HOH HOH . 
J 5 HOH A 30 430 52 HOH HOH . 
J 5 HOH A 31 431 34 HOH HOH . 
J 5 HOH A 32 432 18 HOH HOH . 
J 5 HOH A 33 433 11 HOH HOH . 
J 5 HOH A 34 434 74 HOH HOH . 
J 5 HOH A 35 435 38 HOH HOH . 
J 5 HOH A 36 436 72 HOH HOH . 
J 5 HOH A 37 437 24 HOH HOH . 
J 5 HOH A 38 438 44 HOH HOH . 
K 5 HOH B 1 401 20 HOH HOH . 
K 5 HOH B 2 402 6 HOH HOH . 
K 5 HOH B 3 403 51 HOH HOH . 
K 5 HOH B 4 404 29 HOH HOH . 
K 5 HOH B 5 405 68 HOH HOH . 
K 5 HOH B 6 406 30 HOH HOH . 
K 5 HOH B 7 407 31 HOH HOH . 
K 5 HOH B 8 408 39 HOH HOH . 
K 5 HOH B 9 409 9 HOH HOH . 
K 5 HOH B 10 410 57 HOH HOH . 
K 5 HOH B 11 411 53 HOH HOH . 
K 5 HOH B 12 412 3 HOH HOH . 
K 5 HOH B 13 413 47 HOH HOH . 
K 5 HOH B 14 414 7 HOH HOH . 
K 5 HOH B 15 415 13 HOH HOH . 
K 5 HOH B 16 416 28 HOH HOH . 
K 5 HOH B 17 417 63 HOH HOH . 
K 5 HOH B 18 418 48 HOH HOH . 
K 5 HOH B 19 419 71 HOH HOH . 
K 5 HOH B 20 420 66 HOH HOH . 
K 5 HOH B 21 421 12 HOH HOH . 
K 5 HOH B 22 422 49 HOH HOH . 
K 5 HOH B 23 423 35 HOH HOH . 
K 5 HOH B 24 424 73 HOH HOH . 
K 5 HOH B 25 425 25 HOH HOH . 
K 5 HOH B 26 426 61 HOH HOH . 
K 5 HOH B 27 427 50 HOH HOH . 
K 5 HOH B 28 428 64 HOH HOH . 
K 5 HOH B 29 429 46 HOH HOH . 
K 5 HOH B 30 430 32 HOH HOH . 
K 5 HOH B 31 431 65 HOH HOH . 
K 5 HOH B 32 432 26 HOH HOH . 
K 5 HOH B 33 433 62 HOH HOH . 
K 5 HOH B 34 434 27 HOH HOH . 
K 5 HOH B 35 435 67 HOH HOH . 
K 5 HOH B 36 436 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ORN . . . C 2 -4.025 19.496 -11.447 1 80.68 ? N ORN 301 A 1 
HETATM 2 C CA ORN . . . C 2 -3.06 19.652 -12.549 1 80.45 ? CA ORN 301 A 1 
HETATM 3 C CB ORN . . . C 2 -1.811 18.789 -12.323 1 81.83 ? CB ORN 301 A 1 
HETATM 4 C CG ORN . . . C 2 -2.174 17.325 -12.033 1 82.8 ? CG ORN 301 A 1 
HETATM 5 C CD ORN . . . C 2 -0.906 16.471 -12.127 1 84.03 ? CD ORN 301 A 1 
HETATM 6 N NE ORN . . . C 2 -1.198 15.048 -11.897 1 83.98 ? NE ORN 301 A 1 
HETATM 7 C C ORN . . . C 2 -3.678 19.327 -13.922 1 80.2 ? C ORN 301 A 1 
HETATM 8 O O ORN . . . C 2 -2.967 19.585 -14.909 1 79.79 ? O ORN 301 A 1 
HETATM 9 O OXT ORN . . . C 2 -4.825 18.826 -13.969 1 80.64 ? OXT ORN 301 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#