data_5ZEH # _model_server_result.job_id ejt6uV6dfz8ULbBShAjpFw _model_server_result.datetime_utc '2024-11-30 01:26:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zeh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 5ZEH # _exptl.entry_id 5ZEH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZEH _cell.length_a 87.605 _cell.length_b 97.494 _cell.length_c 133.255 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZEH _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 114 A HIS 98 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc2 A OD2 ASP 140 A ASP 124 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc3 A OD1 ASP 140 A ASP 124 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc4 A ND1 HIS 142 A HIS 126 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc5 A OD2 ASP 144 A ASP 128 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc6 A OD2 ASP 241 A ASP 225 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc7 A OD2 ASP 241 A ASP 225 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc8 A OD1 ASP 243 A ASP 227 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc9 A OD2 ASP 243 A ASP 227 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc10 D MN MN . A MN 302 1_555 J O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc11 D MN MN . A MN 302 1_555 J O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc12 E MN MN . A MN 303 1_555 J O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc13 B ND1 HIS 114 B HIS 98 1_555 H MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc14 B OD2 ASP 140 B ASP 124 1_555 H MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc15 B OD1 ASP 140 B ASP 124 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc16 B ND1 HIS 142 B HIS 126 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc17 B OD2 ASP 144 B ASP 128 1_555 H MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc18 B OD2 ASP 241 B ASP 225 1_555 H MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc19 B OD2 ASP 241 B ASP 225 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc20 B OD1 ASP 243 B ASP 227 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc21 B OD2 ASP 243 B ASP 227 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc22 H MN MN . B MN 302 1_555 K O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc23 I MN MN . B MN 303 1_555 K O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5ZEH _atom_sites.fract_transf_matrix[1][1] 0.011415 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ORN A 1 301 350 ORN ORN . D 3 MN A 1 302 400 MN MN . E 3 MN A 1 303 401 MN MN . F 4 EDO A 1 304 450 EDO EDO . G 2 ORN B 1 301 350 ORN ORN . H 3 MN B 1 302 400 MN MN . I 3 MN B 1 303 401 MN MN . J 5 HOH A 1 401 5 HOH HOH . J 5 HOH A 2 402 22 HOH HOH . J 5 HOH A 3 403 1 HOH HOH . J 5 HOH A 4 404 69 HOH HOH . J 5 HOH A 5 405 21 HOH HOH . J 5 HOH A 6 406 2 HOH HOH . J 5 HOH A 7 407 60 HOH HOH . J 5 HOH A 8 408 37 HOH HOH . J 5 HOH A 9 409 40 HOH HOH . J 5 HOH A 10 410 4 HOH HOH . J 5 HOH A 11 411 10 HOH HOH . J 5 HOH A 12 412 59 HOH HOH . J 5 HOH A 13 413 36 HOH HOH . J 5 HOH A 14 414 14 HOH HOH . J 5 HOH A 15 415 55 HOH HOH . J 5 HOH A 16 416 54 HOH HOH . J 5 HOH A 17 417 41 HOH HOH . J 5 HOH A 18 418 15 HOH HOH . J 5 HOH A 19 419 58 HOH HOH . J 5 HOH A 20 420 70 HOH HOH . J 5 HOH A 21 421 23 HOH HOH . J 5 HOH A 22 422 19 HOH HOH . J 5 HOH A 23 423 8 HOH HOH . J 5 HOH A 24 424 56 HOH HOH . J 5 HOH A 25 425 16 HOH HOH . J 5 HOH A 26 426 43 HOH HOH . J 5 HOH A 27 427 42 HOH HOH . J 5 HOH A 28 428 17 HOH HOH . J 5 HOH A 29 429 45 HOH HOH . J 5 HOH A 30 430 52 HOH HOH . J 5 HOH A 31 431 34 HOH HOH . J 5 HOH A 32 432 18 HOH HOH . J 5 HOH A 33 433 11 HOH HOH . J 5 HOH A 34 434 74 HOH HOH . J 5 HOH A 35 435 38 HOH HOH . J 5 HOH A 36 436 72 HOH HOH . J 5 HOH A 37 437 24 HOH HOH . J 5 HOH A 38 438 44 HOH HOH . K 5 HOH B 1 401 20 HOH HOH . K 5 HOH B 2 402 6 HOH HOH . K 5 HOH B 3 403 51 HOH HOH . K 5 HOH B 4 404 29 HOH HOH . K 5 HOH B 5 405 68 HOH HOH . K 5 HOH B 6 406 30 HOH HOH . K 5 HOH B 7 407 31 HOH HOH . K 5 HOH B 8 408 39 HOH HOH . K 5 HOH B 9 409 9 HOH HOH . K 5 HOH B 10 410 57 HOH HOH . K 5 HOH B 11 411 53 HOH HOH . K 5 HOH B 12 412 3 HOH HOH . K 5 HOH B 13 413 47 HOH HOH . K 5 HOH B 14 414 7 HOH HOH . K 5 HOH B 15 415 13 HOH HOH . K 5 HOH B 16 416 28 HOH HOH . K 5 HOH B 17 417 63 HOH HOH . K 5 HOH B 18 418 48 HOH HOH . K 5 HOH B 19 419 71 HOH HOH . K 5 HOH B 20 420 66 HOH HOH . K 5 HOH B 21 421 12 HOH HOH . K 5 HOH B 22 422 49 HOH HOH . K 5 HOH B 23 423 35 HOH HOH . K 5 HOH B 24 424 73 HOH HOH . K 5 HOH B 25 425 25 HOH HOH . K 5 HOH B 26 426 61 HOH HOH . K 5 HOH B 27 427 50 HOH HOH . K 5 HOH B 28 428 64 HOH HOH . K 5 HOH B 29 429 46 HOH HOH . K 5 HOH B 30 430 32 HOH HOH . K 5 HOH B 31 431 65 HOH HOH . K 5 HOH B 32 432 26 HOH HOH . K 5 HOH B 33 433 62 HOH HOH . K 5 HOH B 34 434 27 HOH HOH . K 5 HOH B 35 435 67 HOH HOH . K 5 HOH B 36 436 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -18.476 -7.987 -0.278 1 76.45 ? C1 EDO 304 A 1 HETATM 2 O O1 EDO . . . F 4 -18.467 -6.839 0.574 1 75.83 ? O1 EDO 304 A 1 HETATM 3 C C2 EDO . . . F 4 -17.931 -9.181 0.497 1 77.18 ? C2 EDO 304 A 1 HETATM 4 O O2 EDO . . . F 4 -17.624 -10.235 -0.419 1 77.95 ? O2 EDO 304 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #