data_5ZER
#
_model_server_result.job_id            ET8Cdnt4oRVN4WzGCKoMiQ 
_model_server_result.datetime_utc      '2024-11-24 01:16:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zer 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    5ZER 
#
_exptl.entry_id    5ZER 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              239.231 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7,8-DIHYDROBIOPTERIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.27 
_cell.angle_gamma         90 
_cell.entry_id            5ZER 
_cell.length_a            167.13 
_cell.length_b            80 
_cell.length_c            53.38 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZER 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 126 A SER 127 1_555 A N MSE 127 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 127 A MSE 128 1_555 A N GLY 128 A GLY 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C VAL 133 A VAL 134 1_555 A N MSE 134 A MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 A C MSE 134 A MSE 135 1_555 A N ASP 135 A ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C LEU 260 A LEU 261 1_555 A N MSE 261 A MSE 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale6 A C MSE 261 A MSE 262 1_555 A N THR 262 A THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale7 A C ALA 339 A ALA 340 1_555 A N MSE 340 A MSE 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 A C MSE 340 A MSE 341 1_555 A N GLY 341 A GLY 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale9 B C SER 126 B SER 127 1_555 B N MSE 127 B MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 B C MSE 127 B MSE 128 1_555 B N GLY 128 B GLY 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale11 B C VAL 133 B VAL 134 1_555 B N MSE 134 B MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale12 B C MSE 134 B MSE 135 1_555 B N ASP 135 B ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale13 B C LEU 260 B LEU 261 1_555 B N MSE 261 B MSE 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale14 B C MSE 261 B MSE 262 1_555 B N THR 262 B THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale15 B C ALA 339 B ALA 340 1_555 B N MSE 340 B MSE 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale16 B C MSE 340 B MSE 341 1_555 B N GLY 341 B GLY 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C9 H13 N5 O3' 
_chem_comp.formula_weight    239.231 
_chem_comp.id                HBI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7,8-DIHYDROBIOPTERIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 HBI doub 142 n y 
N1 C8A HBI sing 143 n y 
N2 C2 HBI sing 144 n n 
N2 HN21 HBI sing 145 n n 
N2 HN22 HBI sing 146 n n 
C2 N3 HBI sing 147 n y 
N3 C4 HBI sing 148 n y 
N3 H3 HBI sing 149 n n 
C4 O4 HBI doub 150 n n 
C4 C4A HBI sing 151 n y 
C4A C8A HBI doub 152 n y 
C4A N5 HBI sing 153 n n 
C8A N8 HBI sing 154 n n 
N8 C7 HBI sing 155 n n 
N8 H8 HBI sing 156 n n 
C7 C6 HBI sing 157 n n 
C7 H71 HBI sing 158 n n 
C7 H72 HBI sing 159 n n 
C6 N5 HBI doub 160 n n 
C6 C9 HBI sing 161 n n 
C9 O9 HBI sing 162 n n 
C9 C10 HBI sing 163 n n 
C9 H9 HBI sing 164 n n 
O9 HO9 HBI sing 165 n n 
C10 O10 HBI sing 166 n n 
C10 C11 HBI sing 167 n n 
C10 H10 HBI sing 168 n n 
O10 HO1 HBI sing 169 n n 
C11 H111 HBI sing 170 n n 
C11 H112 HBI sing 171 n n 
C11 H113 HBI sing 172 n n 
#
_atom_sites.entry_id                     5ZER 
_atom_sites.fract_transf_matrix[1][1]    0.005983 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000133 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0125 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018738 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HBI A 1 401 1 HBI HBI . 
D 3 GOL A 1 402 1 GOL GOL . 
E 2 HBI B 1 401 1 HBI HBI . 
F 4 HOH A 1 501 110 HOH HOH . 
F 4 HOH A 2 502 104 HOH HOH . 
F 4 HOH A 3 503 29 HOH HOH . 
F 4 HOH A 4 504 13 HOH HOH . 
F 4 HOH A 5 505 71 HOH HOH . 
F 4 HOH A 6 506 12 HOH HOH . 
F 4 HOH A 7 507 77 HOH HOH . 
F 4 HOH A 8 508 56 HOH HOH . 
F 4 HOH A 9 509 63 HOH HOH . 
F 4 HOH A 10 510 60 HOH HOH . 
F 4 HOH A 11 511 3 HOH HOH . 
F 4 HOH A 12 512 114 HOH HOH . 
F 4 HOH A 13 513 97 HOH HOH . 
F 4 HOH A 14 514 20 HOH HOH . 
F 4 HOH A 15 515 111 HOH HOH . 
F 4 HOH A 16 516 78 HOH HOH . 
F 4 HOH A 17 517 39 HOH HOH . 
F 4 HOH A 18 518 34 HOH HOH . 
F 4 HOH A 19 519 36 HOH HOH . 
F 4 HOH A 20 520 9 HOH HOH . 
F 4 HOH A 21 521 68 HOH HOH . 
F 4 HOH A 22 522 173 HOH HOH . 
F 4 HOH A 23 523 2 HOH HOH . 
F 4 HOH A 24 524 43 HOH HOH . 
F 4 HOH A 25 525 82 HOH HOH . 
F 4 HOH A 26 526 86 HOH HOH . 
F 4 HOH A 27 527 37 HOH HOH . 
F 4 HOH A 28 528 65 HOH HOH . 
F 4 HOH A 29 529 16 HOH HOH . 
F 4 HOH A 30 530 25 HOH HOH . 
F 4 HOH A 31 531 10 HOH HOH . 
F 4 HOH A 32 532 64 HOH HOH . 
F 4 HOH A 33 533 35 HOH HOH . 
F 4 HOH A 34 534 55 HOH HOH . 
F 4 HOH A 35 535 112 HOH HOH . 
F 4 HOH A 36 536 174 HOH HOH . 
F 4 HOH A 37 537 58 HOH HOH . 
F 4 HOH A 38 538 26 HOH HOH . 
F 4 HOH A 39 539 7 HOH HOH . 
F 4 HOH A 40 540 175 HOH HOH . 
F 4 HOH A 41 541 171 HOH HOH . 
F 4 HOH A 42 542 137 HOH HOH . 
F 4 HOH A 43 543 5 HOH HOH . 
F 4 HOH A 44 544 140 HOH HOH . 
F 4 HOH A 45 545 105 HOH HOH . 
F 4 HOH A 46 546 92 HOH HOH . 
F 4 HOH A 47 547 123 HOH HOH . 
F 4 HOH A 48 548 62 HOH HOH . 
F 4 HOH A 49 549 154 HOH HOH . 
F 4 HOH A 50 550 87 HOH HOH . 
F 4 HOH A 51 551 19 HOH HOH . 
F 4 HOH A 52 552 67 HOH HOH . 
F 4 HOH A 53 553 127 HOH HOH . 
F 4 HOH A 54 554 57 HOH HOH . 
F 4 HOH A 55 555 49 HOH HOH . 
F 4 HOH A 56 556 182 HOH HOH . 
F 4 HOH A 57 557 6 HOH HOH . 
F 4 HOH A 58 558 21 HOH HOH . 
F 4 HOH A 59 559 189 HOH HOH . 
F 4 HOH A 60 560 72 HOH HOH . 
F 4 HOH A 61 561 156 HOH HOH . 
F 4 HOH A 62 562 102 HOH HOH . 
F 4 HOH A 63 563 80 HOH HOH . 
F 4 HOH A 64 564 176 HOH HOH . 
F 4 HOH A 65 565 135 HOH HOH . 
F 4 HOH A 66 566 172 HOH HOH . 
F 4 HOH A 67 567 126 HOH HOH . 
F 4 HOH A 68 568 192 HOH HOH . 
F 4 HOH A 69 569 85 HOH HOH . 
F 4 HOH A 70 570 46 HOH HOH . 
F 4 HOH A 71 571 70 HOH HOH . 
F 4 HOH A 72 572 133 HOH HOH . 
F 4 HOH A 73 573 23 HOH HOH . 
F 4 HOH A 74 574 98 HOH HOH . 
F 4 HOH A 75 575 103 HOH HOH . 
F 4 HOH A 76 576 81 HOH HOH . 
F 4 HOH A 77 577 84 HOH HOH . 
F 4 HOH A 78 578 94 HOH HOH . 
F 4 HOH A 79 579 38 HOH HOH . 
F 4 HOH A 80 580 69 HOH HOH . 
F 4 HOH A 81 581 107 HOH HOH . 
F 4 HOH A 82 582 178 HOH HOH . 
F 4 HOH A 83 583 180 HOH HOH . 
F 4 HOH A 84 584 165 HOH HOH . 
F 4 HOH A 85 585 179 HOH HOH . 
F 4 HOH A 86 586 74 HOH HOH . 
F 4 HOH A 87 587 129 HOH HOH . 
F 4 HOH A 88 588 161 HOH HOH . 
F 4 HOH A 89 589 95 HOH HOH . 
G 4 HOH B 1 501 118 HOH HOH . 
G 4 HOH B 2 502 14 HOH HOH . 
G 4 HOH B 3 503 101 HOH HOH . 
G 4 HOH B 4 504 117 HOH HOH . 
G 4 HOH B 5 505 33 HOH HOH . 
G 4 HOH B 6 506 130 HOH HOH . 
G 4 HOH B 7 507 149 HOH HOH . 
G 4 HOH B 8 508 42 HOH HOH . 
G 4 HOH B 9 509 89 HOH HOH . 
G 4 HOH B 10 510 83 HOH HOH . 
G 4 HOH B 11 511 164 HOH HOH . 
G 4 HOH B 12 512 90 HOH HOH . 
G 4 HOH B 13 513 51 HOH HOH . 
G 4 HOH B 14 514 144 HOH HOH . 
G 4 HOH B 15 515 75 HOH HOH . 
G 4 HOH B 16 516 131 HOH HOH . 
G 4 HOH B 17 517 31 HOH HOH . 
G 4 HOH B 18 518 108 HOH HOH . 
G 4 HOH B 19 519 27 HOH HOH . 
G 4 HOH B 20 520 22 HOH HOH . 
G 4 HOH B 21 521 167 HOH HOH . 
G 4 HOH B 22 522 30 HOH HOH . 
G 4 HOH B 23 523 121 HOH HOH . 
G 4 HOH B 24 524 59 HOH HOH . 
G 4 HOH B 25 525 136 HOH HOH . 
G 4 HOH B 26 526 138 HOH HOH . 
G 4 HOH B 27 527 1 HOH HOH . 
G 4 HOH B 28 528 50 HOH HOH . 
G 4 HOH B 29 529 44 HOH HOH . 
G 4 HOH B 30 530 187 HOH HOH . 
G 4 HOH B 31 531 191 HOH HOH . 
G 4 HOH B 32 532 17 HOH HOH . 
G 4 HOH B 33 533 115 HOH HOH . 
G 4 HOH B 34 534 177 HOH HOH . 
G 4 HOH B 35 535 41 HOH HOH . 
G 4 HOH B 36 536 8 HOH HOH . 
G 4 HOH B 37 537 66 HOH HOH . 
G 4 HOH B 38 538 4 HOH HOH . 
G 4 HOH B 39 539 54 HOH HOH . 
G 4 HOH B 40 540 15 HOH HOH . 
G 4 HOH B 41 541 52 HOH HOH . 
G 4 HOH B 42 542 73 HOH HOH . 
G 4 HOH B 43 543 99 HOH HOH . 
G 4 HOH B 44 544 119 HOH HOH . 
G 4 HOH B 45 545 18 HOH HOH . 
G 4 HOH B 46 546 185 HOH HOH . 
G 4 HOH B 47 547 61 HOH HOH . 
G 4 HOH B 48 548 124 HOH HOH . 
G 4 HOH B 49 549 32 HOH HOH . 
G 4 HOH B 50 550 158 HOH HOH . 
G 4 HOH B 51 551 184 HOH HOH . 
G 4 HOH B 52 552 120 HOH HOH . 
G 4 HOH B 53 553 141 HOH HOH . 
G 4 HOH B 54 554 48 HOH HOH . 
G 4 HOH B 55 555 186 HOH HOH . 
G 4 HOH B 56 556 24 HOH HOH . 
G 4 HOH B 57 557 28 HOH HOH . 
G 4 HOH B 58 558 145 HOH HOH . 
G 4 HOH B 59 559 76 HOH HOH . 
G 4 HOH B 60 560 128 HOH HOH . 
G 4 HOH B 61 561 79 HOH HOH . 
G 4 HOH B 62 562 109 HOH HOH . 
G 4 HOH B 63 563 193 HOH HOH . 
G 4 HOH B 64 564 162 HOH HOH . 
G 4 HOH B 65 565 147 HOH HOH . 
G 4 HOH B 66 566 181 HOH HOH . 
G 4 HOH B 67 567 100 HOH HOH . 
G 4 HOH B 68 568 47 HOH HOH . 
G 4 HOH B 69 569 106 HOH HOH . 
G 4 HOH B 70 570 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 HBI . . . E 2 21.125 27.862 -1.77 1 47.75 ? N1 HBI 401 B 1 
HETATM 2 N N2 HBI . . . E 2 21.745 25.911 -0.66 1 42.56 ? N2 HBI 401 B 1 
HETATM 3 C C2 HBI . . . E 2 20.961 26.52 -1.59 1 45.26 ? C2 HBI 401 B 1 
HETATM 4 N N3 HBI . . . E 2 20.056 25.812 -2.327 1 45.34 ? N3 HBI 401 B 1 
HETATM 5 C C4 HBI . . . E 2 19.263 26.394 -3.259 1 43.71 ? C4 HBI 401 B 1 
HETATM 6 O O4 HBI . . . E 2 18.474 25.678 -3.904 1 37.22 ? O4 HBI 401 B 1 
HETATM 7 C C4A HBI . . . E 2 19.385 27.88 -3.515 1 46.67 ? C4A HBI 401 B 1 
HETATM 8 C C8A HBI . . . E 2 20.412 28.585 -2.68 1 47.76 ? C8A HBI 401 B 1 
HETATM 9 N N8 HBI . . . E 2 20.599 29.91 -2.795 1 48.63 ? N8 HBI 401 B 1 
HETATM 10 C C7 HBI . . . E 2 19.834 30.721 -3.741 1 50.39 ? C7 HBI 401 B 1 
HETATM 11 C C6 HBI . . . E 2 18.824 29.933 -4.574 1 51.38 ? C6 HBI 401 B 1 
HETATM 12 N N5 HBI . . . E 2 18.655 28.582 -4.424 1 44.73 ? N5 HBI 401 B 1 
HETATM 13 C C9 HBI . . . E 2 17.995 30.701 -5.556 1 55.45 ? C9 HBI 401 B 1 
HETATM 14 O O9 HBI . . . E 2 18.25 32.112 -5.465 1 51.15 ? O9 HBI 401 B 1 
HETATM 15 C C10 HBI . . . E 2 18.246 30.244 -6.98 1 63.98 ? C10 HBI 401 B 1 
HETATM 16 O O10 HBI . . . E 2 17.973 28.834 -7.063 1 75.94 ? O10 HBI 401 B 1 
HETATM 17 C C11 HBI . . . E 2 17.361 31 -7.967 1 66.95 ? C11 HBI 401 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           41 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           1177 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           17 
#