data_5ZES
#
_model_server_result.job_id            cYA-ygpLRULSjfk_nbNXXA 
_model_server_result.datetime_utc      '2024-11-14 13:00:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zes 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    5ZES 
#
_exptl.entry_id    5ZES 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.87 
_cell.angle_gamma         90 
_cell.entry_id            5ZES 
_cell.length_a            171.81 
_cell.length_b            78.698 
_cell.length_c            53.605 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZES 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 126 A SER 127 1_555 A N MSE 127 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C MSE 127 A MSE 128 1_555 A N GLY 128 A GLY 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale3 A C VAL 133 A VAL 134 1_555 A N MSE 134 A MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 A C MSE 134 A MSE 135 1_555 A N ASP 135 A ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale5 A C LEU 260 A LEU 261 1_555 A N MSE 261 A MSE 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C MSE 261 A MSE 262 1_555 A N THR 262 A THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale7 A C ALA 339 A ALA 340 1_555 A N MSE 340 A MSE 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 A C MSE 340 A MSE 341 1_555 A N GLY 341 A GLY 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale9 B C SER 126 B SER 127 1_555 B N MSE 127 B MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale10 B C MSE 127 B MSE 128 1_555 B N GLY 128 B GLY 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 B C VAL 133 B VAL 134 1_555 B N MSE 134 B MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale12 B C MSE 134 B MSE 135 1_555 B N ASP 135 B ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 B C LEU 260 B LEU 261 1_555 B N MSE 261 B MSE 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale14 B C MSE 261 B MSE 262 1_555 B N THR 262 B THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale15 B C ALA 339 B ALA 340 1_555 B N MSE 340 B MSE 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale16 B C MSE 340 B MSE 341 1_555 B N GLY 341 B GLY 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5ZES 
_atom_sites.fract_transf_matrix[1][1]    0.00582 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000088 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012707 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018657 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UDP A 1 401 1 UDP UDP . 
D 3 GOL A 1 402 1 GOL GOL . 
E 3 GOL A 1 403 1 GOL GOL . 
F 4 HOH A 1 501 86 HOH HOH . 
F 4 HOH A 2 502 193 HOH HOH . 
F 4 HOH A 3 503 279 HOH HOH . 
F 4 HOH A 4 504 93 HOH HOH . 
F 4 HOH A 5 505 203 HOH HOH . 
F 4 HOH A 6 506 217 HOH HOH . 
F 4 HOH A 7 507 105 HOH HOH . 
F 4 HOH A 8 508 138 HOH HOH . 
F 4 HOH A 9 509 49 HOH HOH . 
F 4 HOH A 10 510 82 HOH HOH . 
F 4 HOH A 11 511 156 HOH HOH . 
F 4 HOH A 12 512 285 HOH HOH . 
F 4 HOH A 13 513 113 HOH HOH . 
F 4 HOH A 14 514 19 HOH HOH . 
F 4 HOH A 15 515 204 HOH HOH . 
F 4 HOH A 16 516 238 HOH HOH . 
F 4 HOH A 17 517 71 HOH HOH . 
F 4 HOH A 18 518 9 HOH HOH . 
F 4 HOH A 19 519 6 HOH HOH . 
F 4 HOH A 20 520 53 HOH HOH . 
F 4 HOH A 21 521 83 HOH HOH . 
F 4 HOH A 22 522 39 HOH HOH . 
F 4 HOH A 23 523 31 HOH HOH . 
F 4 HOH A 24 524 233 HOH HOH . 
F 4 HOH A 25 525 52 HOH HOH . 
F 4 HOH A 26 526 164 HOH HOH . 
F 4 HOH A 27 527 46 HOH HOH . 
F 4 HOH A 28 528 98 HOH HOH . 
F 4 HOH A 29 529 104 HOH HOH . 
F 4 HOH A 30 530 62 HOH HOH . 
F 4 HOH A 31 531 178 HOH HOH . 
F 4 HOH A 32 532 10 HOH HOH . 
F 4 HOH A 33 533 30 HOH HOH . 
F 4 HOH A 34 534 127 HOH HOH . 
F 4 HOH A 35 535 89 HOH HOH . 
F 4 HOH A 36 536 63 HOH HOH . 
F 4 HOH A 37 537 58 HOH HOH . 
F 4 HOH A 38 538 124 HOH HOH . 
F 4 HOH A 39 539 20 HOH HOH . 
F 4 HOH A 40 540 287 HOH HOH . 
F 4 HOH A 41 541 121 HOH HOH . 
F 4 HOH A 42 542 262 HOH HOH . 
F 4 HOH A 43 543 75 HOH HOH . 
F 4 HOH A 44 544 134 HOH HOH . 
F 4 HOH A 45 545 101 HOH HOH . 
F 4 HOH A 46 546 26 HOH HOH . 
F 4 HOH A 47 547 70 HOH HOH . 
F 4 HOH A 48 548 232 HOH HOH . 
F 4 HOH A 49 549 55 HOH HOH . 
F 4 HOH A 50 550 218 HOH HOH . 
F 4 HOH A 51 551 33 HOH HOH . 
F 4 HOH A 52 552 166 HOH HOH . 
F 4 HOH A 53 553 184 HOH HOH . 
F 4 HOH A 54 554 61 HOH HOH . 
F 4 HOH A 55 555 59 HOH HOH . 
F 4 HOH A 56 556 135 HOH HOH . 
F 4 HOH A 57 557 157 HOH HOH . 
F 4 HOH A 58 558 73 HOH HOH . 
F 4 HOH A 59 559 14 HOH HOH . 
F 4 HOH A 60 560 2 HOH HOH . 
F 4 HOH A 61 561 3 HOH HOH . 
F 4 HOH A 62 562 202 HOH HOH . 
F 4 HOH A 63 563 153 HOH HOH . 
F 4 HOH A 64 564 215 HOH HOH . 
F 4 HOH A 65 565 272 HOH HOH . 
F 4 HOH A 66 566 112 HOH HOH . 
F 4 HOH A 67 567 122 HOH HOH . 
F 4 HOH A 68 568 282 HOH HOH . 
F 4 HOH A 69 569 79 HOH HOH . 
F 4 HOH A 70 570 37 HOH HOH . 
F 4 HOH A 71 571 143 HOH HOH . 
F 4 HOH A 72 572 48 HOH HOH . 
F 4 HOH A 73 573 286 HOH HOH . 
F 4 HOH A 74 574 183 HOH HOH . 
G 4 HOH B 1 401 284 HOH HOH . 
G 4 HOH B 2 402 147 HOH HOH . 
G 4 HOH B 3 403 165 HOH HOH . 
G 4 HOH B 4 404 5 HOH HOH . 
G 4 HOH B 5 405 131 HOH HOH . 
G 4 HOH B 6 406 66 HOH HOH . 
G 4 HOH B 7 407 291 HOH HOH . 
G 4 HOH B 8 408 88 HOH HOH . 
G 4 HOH B 9 409 125 HOH HOH . 
G 4 HOH B 10 410 161 HOH HOH . 
G 4 HOH B 11 411 67 HOH HOH . 
G 4 HOH B 12 412 11 HOH HOH . 
G 4 HOH B 13 413 137 HOH HOH . 
G 4 HOH B 14 414 42 HOH HOH . 
G 4 HOH B 15 415 72 HOH HOH . 
G 4 HOH B 16 416 170 HOH HOH . 
G 4 HOH B 17 417 96 HOH HOH . 
G 4 HOH B 18 418 54 HOH HOH . 
G 4 HOH B 19 419 142 HOH HOH . 
G 4 HOH B 20 420 81 HOH HOH . 
G 4 HOH B 21 421 69 HOH HOH . 
G 4 HOH B 22 422 87 HOH HOH . 
G 4 HOH B 23 423 130 HOH HOH . 
G 4 HOH B 24 424 21 HOH HOH . 
G 4 HOH B 25 425 35 HOH HOH . 
G 4 HOH B 26 426 209 HOH HOH . 
G 4 HOH B 27 427 221 HOH HOH . 
G 4 HOH B 28 428 120 HOH HOH . 
G 4 HOH B 29 429 85 HOH HOH . 
G 4 HOH B 30 430 40 HOH HOH . 
G 4 HOH B 31 431 1 HOH HOH . 
G 4 HOH B 32 432 108 HOH HOH . 
G 4 HOH B 33 433 15 HOH HOH . 
G 4 HOH B 34 434 78 HOH HOH . 
G 4 HOH B 35 435 80 HOH HOH . 
G 4 HOH B 36 436 57 HOH HOH . 
G 4 HOH B 37 437 97 HOH HOH . 
G 4 HOH B 38 438 139 HOH HOH . 
G 4 HOH B 39 439 56 HOH HOH . 
G 4 HOH B 40 440 181 HOH HOH . 
G 4 HOH B 41 441 7 HOH HOH . 
G 4 HOH B 42 442 118 HOH HOH . 
G 4 HOH B 43 443 260 HOH HOH . 
G 4 HOH B 44 444 182 HOH HOH . 
G 4 HOH B 45 445 16 HOH HOH . 
G 4 HOH B 46 446 141 HOH HOH . 
G 4 HOH B 47 447 172 HOH HOH . 
G 4 HOH B 48 448 160 HOH HOH . 
G 4 HOH B 49 449 92 HOH HOH . 
G 4 HOH B 50 450 28 HOH HOH . 
G 4 HOH B 51 451 110 HOH HOH . 
G 4 HOH B 52 452 167 HOH HOH . 
G 4 HOH B 53 453 44 HOH HOH . 
G 4 HOH B 54 454 126 HOH HOH . 
G 4 HOH B 55 455 180 HOH HOH . 
G 4 HOH B 56 456 13 HOH HOH . 
G 4 HOH B 57 457 129 HOH HOH . 
G 4 HOH B 58 458 220 HOH HOH . 
G 4 HOH B 59 459 25 HOH HOH . 
G 4 HOH B 60 460 23 HOH HOH . 
G 4 HOH B 61 461 117 HOH HOH . 
G 4 HOH B 62 462 288 HOH HOH . 
G 4 HOH B 63 463 111 HOH HOH . 
G 4 HOH B 64 464 68 HOH HOH . 
G 4 HOH B 65 465 22 HOH HOH . 
G 4 HOH B 66 466 254 HOH HOH . 
G 4 HOH B 67 467 51 HOH HOH . 
G 4 HOH B 68 468 18 HOH HOH . 
G 4 HOH B 69 469 45 HOH HOH . 
G 4 HOH B 70 470 123 HOH HOH . 
G 4 HOH B 71 471 133 HOH HOH . 
G 4 HOH B 72 472 106 HOH HOH . 
G 4 HOH B 73 473 24 HOH HOH . 
G 4 HOH B 74 474 8 HOH HOH . 
G 4 HOH B 75 475 64 HOH HOH . 
G 4 HOH B 76 476 17 HOH HOH . 
G 4 HOH B 77 477 163 HOH HOH . 
G 4 HOH B 78 478 65 HOH HOH . 
G 4 HOH B 79 479 34 HOH HOH . 
G 4 HOH B 80 480 103 HOH HOH . 
G 4 HOH B 81 481 50 HOH HOH . 
G 4 HOH B 82 482 38 HOH HOH . 
G 4 HOH B 83 483 256 HOH HOH . 
G 4 HOH B 84 484 32 HOH HOH . 
G 4 HOH B 85 485 171 HOH HOH . 
G 4 HOH B 86 486 145 HOH HOH . 
G 4 HOH B 87 487 169 HOH HOH . 
G 4 HOH B 88 488 74 HOH HOH . 
G 4 HOH B 89 489 12 HOH HOH . 
G 4 HOH B 90 490 99 HOH HOH . 
G 4 HOH B 91 491 94 HOH HOH . 
G 4 HOH B 92 492 36 HOH HOH . 
G 4 HOH B 93 493 4 HOH HOH . 
G 4 HOH B 94 494 290 HOH HOH . 
G 4 HOH B 95 495 47 HOH HOH . 
G 4 HOH B 96 496 289 HOH HOH . 
G 4 HOH B 97 497 154 HOH HOH . 
G 4 HOH B 98 498 152 HOH HOH . 
G 4 HOH B 99 499 292 HOH HOH . 
G 4 HOH B 100 500 155 HOH HOH . 
G 4 HOH B 101 501 90 HOH HOH . 
G 4 HOH B 102 502 243 HOH HOH . 
G 4 HOH B 103 503 27 HOH HOH . 
G 4 HOH B 104 504 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 10.115 -8.727 36.66 1 67.41 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . D 3 8.702 -9.005 36.651 1 64.73 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . D 3 10.913 -10.051 36.74 1 70.9 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . D 3 10.279 -11.097 35.952 1 59.93 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . D 3 12.396 -9.801 36.361 1 63.12 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . D 3 13.124 -10.977 35.944 1 53.99 ? O3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              94 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#