data_5ZF4 # _model_server_result.job_id 76VGga6dNpheZeN36A1jMw _model_server_result.datetime_utc '2024-11-29 11:42:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5ZF4 # _exptl.entry_id 5ZF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZF4 _cell.length_a 90.58 _cell.length_b 90.58 _cell.length_c 122.657 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 332 n y N1 C6 ORO sing 333 n y N1 HN1 ORO sing 334 n n C2 O2 ORO doub 335 n n C2 N3 ORO sing 336 n y N3 C4 ORO sing 337 n y N3 HN3 ORO sing 338 n n C4 O4 ORO doub 339 n n C4 C5 ORO sing 340 n y C5 C6 ORO doub 341 n y C5 H5 ORO sing 342 n n C6 C7 ORO sing 343 n n C7 O71 ORO doub 344 n n C7 O72 ORO sing 345 n n O72 HO7 ORO sing 346 n n # _atom_sites.entry_id 5ZF4 _atom_sites.fract_transf_matrix[1][1] 0.01104 _atom_sites.fract_transf_matrix[1][2] 0.006374 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 398 FMN FMN . C 3 ORO A 1 402 399 ORO ORO . D 4 SO4 A 1 403 401 SO4 SO4 . E 4 SO4 A 1 404 402 SO4 SO4 . F 4 SO4 A 1 405 403 SO4 SO4 . G 4 SO4 A 1 406 404 SO4 SO4 . H 5 ACT A 1 407 410 ACT ACT . I 5 ACT A 1 408 411 ACT ACT . J 5 ACT A 1 409 412 ACT ACT . K 5 ACT A 1 410 413 ACT ACT . L 5 ACT A 1 411 414 ACT ACT . M 6 9BL A 1 412 501 9BL DRG . N 7 HOH A 1 501 1043 HOH HOH . N 7 HOH A 2 502 875 HOH HOH . N 7 HOH A 3 503 1009 HOH HOH . N 7 HOH A 4 504 754 HOH HOH . N 7 HOH A 5 505 1031 HOH HOH . N 7 HOH A 6 506 714 HOH HOH . N 7 HOH A 7 507 709 HOH HOH . N 7 HOH A 8 508 725 HOH HOH . N 7 HOH A 9 509 764 HOH HOH . N 7 HOH A 10 510 909 HOH HOH . N 7 HOH A 11 511 819 HOH HOH . N 7 HOH A 12 512 840 HOH HOH . N 7 HOH A 13 513 732 HOH HOH . N 7 HOH A 14 514 861 HOH HOH . N 7 HOH A 15 515 783 HOH HOH . N 7 HOH A 16 516 728 HOH HOH . N 7 HOH A 17 517 710 HOH HOH . N 7 HOH A 18 518 829 HOH HOH . N 7 HOH A 19 519 722 HOH HOH . N 7 HOH A 20 520 850 HOH HOH . N 7 HOH A 21 521 836 HOH HOH . N 7 HOH A 22 522 718 HOH HOH . N 7 HOH A 23 523 828 HOH HOH . N 7 HOH A 24 524 769 HOH HOH . N 7 HOH A 25 525 796 HOH HOH . N 7 HOH A 26 526 858 HOH HOH . N 7 HOH A 27 527 1042 HOH HOH . N 7 HOH A 28 528 1037 HOH HOH . N 7 HOH A 29 529 706 HOH HOH . N 7 HOH A 30 530 704 HOH HOH . N 7 HOH A 31 531 773 HOH HOH . N 7 HOH A 32 532 1034 HOH HOH . N 7 HOH A 33 533 803 HOH HOH . N 7 HOH A 34 534 713 HOH HOH . N 7 HOH A 35 535 741 HOH HOH . N 7 HOH A 36 536 752 HOH HOH . N 7 HOH A 37 537 749 HOH HOH . N 7 HOH A 38 538 717 HOH HOH . N 7 HOH A 39 539 753 HOH HOH . N 7 HOH A 40 540 1001 HOH HOH . N 7 HOH A 41 541 827 HOH HOH . N 7 HOH A 42 542 808 HOH HOH . N 7 HOH A 43 543 885 HOH HOH . N 7 HOH A 44 544 733 HOH HOH . N 7 HOH A 45 545 820 HOH HOH . N 7 HOH A 46 546 765 HOH HOH . N 7 HOH A 47 547 905 HOH HOH . N 7 HOH A 48 548 807 HOH HOH . N 7 HOH A 49 549 772 HOH HOH . N 7 HOH A 50 550 730 HOH HOH . N 7 HOH A 51 551 804 HOH HOH . N 7 HOH A 52 552 832 HOH HOH . N 7 HOH A 53 553 1019 HOH HOH . N 7 HOH A 54 554 838 HOH HOH . N 7 HOH A 55 555 771 HOH HOH . N 7 HOH A 56 556 1036 HOH HOH . N 7 HOH A 57 557 1002 HOH HOH . N 7 HOH A 58 558 923 HOH HOH . N 7 HOH A 59 559 847 HOH HOH . N 7 HOH A 60 560 719 HOH HOH . N 7 HOH A 61 561 707 HOH HOH . N 7 HOH A 62 562 859 HOH HOH . N 7 HOH A 63 563 711 HOH HOH . N 7 HOH A 64 564 835 HOH HOH . N 7 HOH A 65 565 810 HOH HOH . N 7 HOH A 66 566 817 HOH HOH . N 7 HOH A 67 567 882 HOH HOH . N 7 HOH A 68 568 763 HOH HOH . N 7 HOH A 69 569 805 HOH HOH . N 7 HOH A 70 570 715 HOH HOH . N 7 HOH A 71 571 791 HOH HOH . N 7 HOH A 72 572 768 HOH HOH . N 7 HOH A 73 573 745 HOH HOH . N 7 HOH A 74 574 770 HOH HOH . N 7 HOH A 75 575 788 HOH HOH . N 7 HOH A 76 576 724 HOH HOH . N 7 HOH A 77 577 761 HOH HOH . N 7 HOH A 78 578 823 HOH HOH . N 7 HOH A 79 579 731 HOH HOH . N 7 HOH A 80 580 759 HOH HOH . N 7 HOH A 81 581 776 HOH HOH . N 7 HOH A 82 582 723 HOH HOH . N 7 HOH A 83 583 825 HOH HOH . N 7 HOH A 84 584 758 HOH HOH . N 7 HOH A 85 585 777 HOH HOH . N 7 HOH A 86 586 712 HOH HOH . N 7 HOH A 87 587 841 HOH HOH . N 7 HOH A 88 588 779 HOH HOH . N 7 HOH A 89 589 743 HOH HOH . N 7 HOH A 90 590 774 HOH HOH . N 7 HOH A 91 591 744 HOH HOH . N 7 HOH A 92 592 742 HOH HOH . N 7 HOH A 93 593 908 HOH HOH . N 7 HOH A 94 594 806 HOH HOH . N 7 HOH A 95 595 767 HOH HOH . N 7 HOH A 96 596 738 HOH HOH . N 7 HOH A 97 597 931 HOH HOH . N 7 HOH A 98 598 830 HOH HOH . N 7 HOH A 99 599 800 HOH HOH . N 7 HOH A 100 600 1004 HOH HOH . N 7 HOH A 101 601 831 HOH HOH . N 7 HOH A 102 602 780 HOH HOH . N 7 HOH A 103 603 766 HOH HOH . N 7 HOH A 104 604 734 HOH HOH . N 7 HOH A 105 605 1005 HOH HOH . N 7 HOH A 106 606 1040 HOH HOH . N 7 HOH A 107 607 1006 HOH HOH . N 7 HOH A 108 608 920 HOH HOH . N 7 HOH A 109 609 854 HOH HOH . N 7 HOH A 110 610 868 HOH HOH . N 7 HOH A 111 611 903 HOH HOH . N 7 HOH A 112 612 760 HOH HOH . N 7 HOH A 113 613 790 HOH HOH . N 7 HOH A 114 614 762 HOH HOH . N 7 HOH A 115 615 884 HOH HOH . N 7 HOH A 116 616 795 HOH HOH . N 7 HOH A 117 617 843 HOH HOH . N 7 HOH A 118 618 747 HOH HOH . N 7 HOH A 119 619 873 HOH HOH . N 7 HOH A 120 620 877 HOH HOH . N 7 HOH A 121 621 736 HOH HOH . N 7 HOH A 122 622 821 HOH HOH . N 7 HOH A 123 623 867 HOH HOH . N 7 HOH A 124 624 748 HOH HOH . N 7 HOH A 125 625 792 HOH HOH . N 7 HOH A 126 626 716 HOH HOH . N 7 HOH A 127 627 705 HOH HOH . N 7 HOH A 128 628 1027 HOH HOH . N 7 HOH A 129 629 720 HOH HOH . N 7 HOH A 130 630 1025 HOH HOH . N 7 HOH A 131 631 1013 HOH HOH . N 7 HOH A 132 632 834 HOH HOH . N 7 HOH A 133 633 757 HOH HOH . N 7 HOH A 134 634 799 HOH HOH . N 7 HOH A 135 635 755 HOH HOH . N 7 HOH A 136 636 883 HOH HOH . N 7 HOH A 137 637 856 HOH HOH . N 7 HOH A 138 638 708 HOH HOH . N 7 HOH A 139 639 927 HOH HOH . N 7 HOH A 140 640 721 HOH HOH . N 7 HOH A 141 641 922 HOH HOH . N 7 HOH A 142 642 750 HOH HOH . N 7 HOH A 143 643 864 HOH HOH . N 7 HOH A 144 644 839 HOH HOH . N 7 HOH A 145 645 902 HOH HOH . N 7 HOH A 146 646 876 HOH HOH . N 7 HOH A 147 647 894 HOH HOH . N 7 HOH A 148 648 809 HOH HOH . N 7 HOH A 149 649 1023 HOH HOH . N 7 HOH A 150 650 857 HOH HOH . N 7 HOH A 151 651 781 HOH HOH . N 7 HOH A 152 652 881 HOH HOH . N 7 HOH A 153 653 924 HOH HOH . N 7 HOH A 154 654 729 HOH HOH . N 7 HOH A 155 655 1028 HOH HOH . N 7 HOH A 156 656 886 HOH HOH . N 7 HOH A 157 657 798 HOH HOH . N 7 HOH A 158 658 853 HOH HOH . N 7 HOH A 159 659 914 HOH HOH . N 7 HOH A 160 660 865 HOH HOH . N 7 HOH A 161 661 735 HOH HOH . N 7 HOH A 162 662 837 HOH HOH . N 7 HOH A 163 663 818 HOH HOH . N 7 HOH A 164 664 787 HOH HOH . N 7 HOH A 165 665 756 HOH HOH . N 7 HOH A 166 666 737 HOH HOH . N 7 HOH A 167 667 739 HOH HOH . N 7 HOH A 168 668 782 HOH HOH . N 7 HOH A 169 669 811 HOH HOH . N 7 HOH A 170 670 775 HOH HOH . N 7 HOH A 171 671 929 HOH HOH . N 7 HOH A 172 672 1020 HOH HOH . N 7 HOH A 173 673 814 HOH HOH . N 7 HOH A 174 674 866 HOH HOH . N 7 HOH A 175 675 1016 HOH HOH . N 7 HOH A 176 676 797 HOH HOH . N 7 HOH A 177 677 727 HOH HOH . N 7 HOH A 178 678 910 HOH HOH . N 7 HOH A 179 679 833 HOH HOH . N 7 HOH A 180 680 785 HOH HOH . N 7 HOH A 181 681 703 HOH HOH . N 7 HOH A 182 682 900 HOH HOH . N 7 HOH A 183 683 1010 HOH HOH . N 7 HOH A 184 684 1039 HOH HOH . N 7 HOH A 185 685 746 HOH HOH . N 7 HOH A 186 686 1011 HOH HOH . N 7 HOH A 187 687 802 HOH HOH . N 7 HOH A 188 688 751 HOH HOH . N 7 HOH A 189 689 849 HOH HOH . N 7 HOH A 190 690 918 HOH HOH . N 7 HOH A 191 691 896 HOH HOH . N 7 HOH A 192 692 740 HOH HOH . N 7 HOH A 193 693 1015 HOH HOH . N 7 HOH A 194 694 702 HOH HOH . N 7 HOH A 195 695 912 HOH HOH . N 7 HOH A 196 696 794 HOH HOH . N 7 HOH A 197 697 934 HOH HOH . N 7 HOH A 198 698 901 HOH HOH . N 7 HOH A 199 699 888 HOH HOH . N 7 HOH A 200 700 1008 HOH HOH . N 7 HOH A 201 701 1029 HOH HOH . N 7 HOH A 202 702 1007 HOH HOH . N 7 HOH A 203 703 1021 HOH HOH . N 7 HOH A 204 704 826 HOH HOH . N 7 HOH A 205 705 1024 HOH HOH . N 7 HOH A 206 706 907 HOH HOH . N 7 HOH A 207 707 822 HOH HOH . N 7 HOH A 208 708 812 HOH HOH . N 7 HOH A 209 709 1012 HOH HOH . N 7 HOH A 210 710 897 HOH HOH . N 7 HOH A 211 711 915 HOH HOH . N 7 HOH A 212 712 890 HOH HOH . N 7 HOH A 213 713 880 HOH HOH . N 7 HOH A 214 714 891 HOH HOH . N 7 HOH A 215 715 1030 HOH HOH . N 7 HOH A 216 716 851 HOH HOH . N 7 HOH A 217 717 784 HOH HOH . N 7 HOH A 218 718 898 HOH HOH . N 7 HOH A 219 719 862 HOH HOH . N 7 HOH A 220 720 930 HOH HOH . N 7 HOH A 221 721 1014 HOH HOH . N 7 HOH A 222 722 1038 HOH HOH . N 7 HOH A 223 723 906 HOH HOH . N 7 HOH A 224 724 1032 HOH HOH . N 7 HOH A 225 725 824 HOH HOH . N 7 HOH A 226 726 844 HOH HOH . N 7 HOH A 227 727 893 HOH HOH . N 7 HOH A 228 728 925 HOH HOH . N 7 HOH A 229 729 928 HOH HOH . N 7 HOH A 230 730 845 HOH HOH . N 7 HOH A 231 731 869 HOH HOH . N 7 HOH A 232 732 1022 HOH HOH . N 7 HOH A 233 733 1026 HOH HOH . N 7 HOH A 234 734 921 HOH HOH . N 7 HOH A 235 735 1018 HOH HOH . N 7 HOH A 236 736 789 HOH HOH . N 7 HOH A 237 737 786 HOH HOH . N 7 HOH A 238 738 846 HOH HOH . N 7 HOH A 239 739 1003 HOH HOH . N 7 HOH A 240 740 1035 HOH HOH . N 7 HOH A 241 741 1017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . C 3 3.667 45.936 4.976 1 12.86 ? N1 ORO 402 A 1 HETATM 2 C C2 ORO . . . C 3 4.644 45.098 5.357 1 12.92 ? C2 ORO 402 A 1 HETATM 3 O O2 ORO . . . C 3 5.25 44.441 4.476 1 12.77 ? O2 ORO 402 A 1 HETATM 4 N N3 ORO . . . C 3 4.956 44.954 6.659 1 11.97 ? N3 ORO 402 A 1 HETATM 5 C C4 ORO . . . C 3 4.306 45.623 7.625 1 12.28 ? C4 ORO 402 A 1 HETATM 6 O O4 ORO . . . C 3 4.635 45.481 8.809 1 11.89 ? O4 ORO 402 A 1 HETATM 7 C C5 ORO . . . C 3 3.295 46.527 7.278 1 12.26 ? C5 ORO 402 A 1 HETATM 8 C C6 ORO . . . C 3 2.995 46.626 5.93 1 13.05 ? C6 ORO 402 A 1 HETATM 9 C C7 ORO . . . C 3 2.012 47.639 5.464 1 13.78 ? C7 ORO 402 A 1 HETATM 10 O O71 ORO . . . C 3 2.408 48.294 4.479 1 14.16 ? O71 ORO 402 A 1 HETATM 11 O O72 ORO . . . C 3 0.954 47.888 6.058 1 14.86 ? O72 ORO 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 11 #