data_5ZF7 # _model_server_result.job_id OnFeuY8P5rrROIEoTKpNNQ _model_server_result.datetime_utc '2024-11-25 19:30:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zf7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5ZF7 # _exptl.entry_id 5ZF7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZF7 _cell.length_a 90.515 _cell.length_b 90.515 _cell.length_c 122.899 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZF7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 333 n y N1 C6 ORO sing 334 n y N1 HN1 ORO sing 335 n n C2 O2 ORO doub 336 n n C2 N3 ORO sing 337 n y N3 C4 ORO sing 338 n y N3 HN3 ORO sing 339 n n C4 O4 ORO doub 340 n n C4 C5 ORO sing 341 n y C5 C6 ORO doub 342 n y C5 H5 ORO sing 343 n n C6 C7 ORO sing 344 n n C7 O71 ORO doub 345 n n C7 O72 ORO sing 346 n n O72 HO7 ORO sing 347 n n # _atom_sites.entry_id 5ZF7 _atom_sites.fract_transf_matrix[1][1] 0.011048 _atom_sites.fract_transf_matrix[1][2] 0.006379 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 398 FMN FMN . C 3 ORO A 1 402 399 ORO ORO . D 4 ACT A 1 403 401 ACT ACT . E 4 ACT A 1 404 402 ACT ACT . F 5 SO4 A 1 405 404 SO4 SO4 . G 5 SO4 A 1 406 405 SO4 SO4 . H 5 SO4 A 1 407 406 SO4 SO4 . I 6 CHW A 1 408 501 CHW CHW . J 7 HOH A 1 501 875 HOH HOH . J 7 HOH A 2 502 754 HOH HOH . J 7 HOH A 3 503 725 HOH HOH . J 7 HOH A 4 504 783 HOH HOH . J 7 HOH A 5 505 836 HOH HOH . J 7 HOH A 6 506 714 HOH HOH . J 7 HOH A 7 507 769 HOH HOH . J 7 HOH A 8 508 722 HOH HOH . J 7 HOH A 9 509 728 HOH HOH . J 7 HOH A 10 510 732 HOH HOH . J 7 HOH A 11 511 840 HOH HOH . J 7 HOH A 12 512 858 HOH HOH . J 7 HOH A 13 513 885 HOH HOH . J 7 HOH A 14 514 704 HOH HOH . J 7 HOH A 15 515 709 HOH HOH . J 7 HOH A 16 516 710 HOH HOH . J 7 HOH A 17 517 752 HOH HOH . J 7 HOH A 18 518 861 HOH HOH . J 7 HOH A 19 519 819 HOH HOH . J 7 HOH A 20 520 829 HOH HOH . J 7 HOH A 21 521 765 HOH HOH . J 7 HOH A 22 522 771 HOH HOH . J 7 HOH A 23 523 711 HOH HOH . J 7 HOH A 24 524 847 HOH HOH . J 7 HOH A 25 525 730 HOH HOH . J 7 HOH A 26 526 832 HOH HOH . J 7 HOH A 27 527 706 HOH HOH . J 7 HOH A 28 528 838 HOH HOH . J 7 HOH A 29 529 733 HOH HOH . J 7 HOH A 30 530 949 HOH HOH . J 7 HOH A 31 531 909 HOH HOH . J 7 HOH A 32 532 718 HOH HOH . J 7 HOH A 33 533 747 HOH HOH . J 7 HOH A 34 534 842 HOH HOH . J 7 HOH A 35 535 810 HOH HOH . J 7 HOH A 36 536 796 HOH HOH . J 7 HOH A 37 537 724 HOH HOH . J 7 HOH A 38 538 713 HOH HOH . J 7 HOH A 39 539 761 HOH HOH . J 7 HOH A 40 540 763 HOH HOH . J 7 HOH A 41 541 717 HOH HOH . J 7 HOH A 42 542 905 HOH HOH . J 7 HOH A 43 543 753 HOH HOH . J 7 HOH A 44 544 776 HOH HOH . J 7 HOH A 45 545 759 HOH HOH . J 7 HOH A 46 546 715 HOH HOH . J 7 HOH A 47 547 837 HOH HOH . J 7 HOH A 48 548 942 HOH HOH . J 7 HOH A 49 549 917 HOH HOH . J 7 HOH A 50 550 923 HOH HOH . J 7 HOH A 51 551 741 HOH HOH . J 7 HOH A 52 552 823 HOH HOH . J 7 HOH A 53 553 827 HOH HOH . J 7 HOH A 54 554 764 HOH HOH . J 7 HOH A 55 555 825 HOH HOH . J 7 HOH A 56 556 707 HOH HOH . J 7 HOH A 57 557 745 HOH HOH . J 7 HOH A 58 558 804 HOH HOH . J 7 HOH A 59 559 820 HOH HOH . J 7 HOH A 60 560 719 HOH HOH . J 7 HOH A 61 561 850 HOH HOH . J 7 HOH A 62 562 962 HOH HOH . J 7 HOH A 63 563 768 HOH HOH . J 7 HOH A 64 564 841 HOH HOH . J 7 HOH A 65 565 788 HOH HOH . J 7 HOH A 66 566 723 HOH HOH . J 7 HOH A 67 567 859 HOH HOH . J 7 HOH A 68 568 807 HOH HOH . J 7 HOH A 69 569 777 HOH HOH . J 7 HOH A 70 570 790 HOH HOH . J 7 HOH A 71 571 744 HOH HOH . J 7 HOH A 72 572 803 HOH HOH . J 7 HOH A 73 573 772 HOH HOH . J 7 HOH A 74 574 956 HOH HOH . J 7 HOH A 75 575 767 HOH HOH . J 7 HOH A 76 576 860 HOH HOH . J 7 HOH A 77 577 742 HOH HOH . J 7 HOH A 78 578 736 HOH HOH . J 7 HOH A 79 579 734 HOH HOH . J 7 HOH A 80 580 808 HOH HOH . J 7 HOH A 81 581 738 HOH HOH . J 7 HOH A 82 582 731 HOH HOH . J 7 HOH A 83 583 791 HOH HOH . J 7 HOH A 84 584 712 HOH HOH . J 7 HOH A 85 585 749 HOH HOH . J 7 HOH A 86 586 779 HOH HOH . J 7 HOH A 87 587 968 HOH HOH . J 7 HOH A 88 588 894 HOH HOH . J 7 HOH A 89 589 902 HOH HOH . J 7 HOH A 90 590 766 HOH HOH . J 7 HOH A 91 591 743 HOH HOH . J 7 HOH A 92 592 920 HOH HOH . J 7 HOH A 93 593 927 HOH HOH . J 7 HOH A 94 594 948 HOH HOH . J 7 HOH A 95 595 750 HOH HOH . J 7 HOH A 96 596 882 HOH HOH . J 7 HOH A 97 597 780 HOH HOH . J 7 HOH A 98 598 922 HOH HOH . J 7 HOH A 99 599 831 HOH HOH . J 7 HOH A 100 600 800 HOH HOH . J 7 HOH A 101 601 951 HOH HOH . J 7 HOH A 102 602 952 HOH HOH . J 7 HOH A 103 603 908 HOH HOH . J 7 HOH A 104 604 806 HOH HOH . J 7 HOH A 105 605 877 HOH HOH . J 7 HOH A 106 606 854 HOH HOH . J 7 HOH A 107 607 758 HOH HOH . J 7 HOH A 108 608 867 HOH HOH . J 7 HOH A 109 609 795 HOH HOH . J 7 HOH A 110 610 903 HOH HOH . J 7 HOH A 111 611 774 HOH HOH . J 7 HOH A 112 612 866 HOH HOH . J 7 HOH A 113 613 770 HOH HOH . J 7 HOH A 114 614 931 HOH HOH . J 7 HOH A 115 615 760 HOH HOH . J 7 HOH A 116 616 781 HOH HOH . J 7 HOH A 117 617 762 HOH HOH . J 7 HOH A 118 618 757 HOH HOH . J 7 HOH A 119 619 955 HOH HOH . J 7 HOH A 120 620 821 HOH HOH . J 7 HOH A 121 621 817 HOH HOH . J 7 HOH A 122 622 924 HOH HOH . J 7 HOH A 123 623 748 HOH HOH . J 7 HOH A 124 624 830 HOH HOH . J 7 HOH A 125 625 865 HOH HOH . J 7 HOH A 126 626 720 HOH HOH . J 7 HOH A 127 627 792 HOH HOH . J 7 HOH A 128 628 884 HOH HOH . J 7 HOH A 129 629 857 HOH HOH . J 7 HOH A 130 630 852 HOH HOH . J 7 HOH A 131 631 798 HOH HOH . J 7 HOH A 132 632 868 HOH HOH . J 7 HOH A 133 633 716 HOH HOH . J 7 HOH A 134 634 834 HOH HOH . J 7 HOH A 135 635 755 HOH HOH . J 7 HOH A 136 636 705 HOH HOH . J 7 HOH A 137 637 805 HOH HOH . J 7 HOH A 138 638 853 HOH HOH . J 7 HOH A 139 639 883 HOH HOH . J 7 HOH A 140 640 856 HOH HOH . J 7 HOH A 141 641 801 HOH HOH . J 7 HOH A 142 642 904 HOH HOH . J 7 HOH A 143 643 811 HOH HOH . J 7 HOH A 144 644 873 HOH HOH . J 7 HOH A 145 645 843 HOH HOH . J 7 HOH A 146 646 708 HOH HOH . J 7 HOH A 147 647 721 HOH HOH . J 7 HOH A 148 648 835 HOH HOH . J 7 HOH A 149 649 726 HOH HOH . J 7 HOH A 150 650 881 HOH HOH . J 7 HOH A 151 651 809 HOH HOH . J 7 HOH A 152 652 876 HOH HOH . J 7 HOH A 153 653 889 HOH HOH . J 7 HOH A 154 654 814 HOH HOH . J 7 HOH A 155 655 886 HOH HOH . J 7 HOH A 156 656 888 HOH HOH . J 7 HOH A 157 657 737 HOH HOH . J 7 HOH A 158 658 739 HOH HOH . J 7 HOH A 159 659 784 HOH HOH . J 7 HOH A 160 660 818 HOH HOH . J 7 HOH A 161 661 874 HOH HOH . J 7 HOH A 162 662 785 HOH HOH . J 7 HOH A 163 663 735 HOH HOH . J 7 HOH A 164 664 849 HOH HOH . J 7 HOH A 165 665 756 HOH HOH . J 7 HOH A 166 666 740 HOH HOH . J 7 HOH A 167 667 729 HOH HOH . J 7 HOH A 168 668 727 HOH HOH . J 7 HOH A 169 669 839 HOH HOH . J 7 HOH A 170 670 775 HOH HOH . J 7 HOH A 171 672 787 HOH HOH . J 7 HOH A 172 673 879 HOH HOH . J 7 HOH A 173 674 751 HOH HOH . J 7 HOH A 174 675 918 HOH HOH . J 7 HOH A 175 676 914 HOH HOH . J 7 HOH A 176 677 799 HOH HOH . J 7 HOH A 177 678 797 HOH HOH . J 7 HOH A 178 679 963 HOH HOH . J 7 HOH A 179 680 929 HOH HOH . J 7 HOH A 180 681 900 HOH HOH . J 7 HOH A 181 682 896 HOH HOH . J 7 HOH A 182 683 864 HOH HOH . J 7 HOH A 183 684 794 HOH HOH . J 7 HOH A 184 685 701 HOH HOH . J 7 HOH A 185 686 910 HOH HOH . J 7 HOH A 186 687 703 HOH HOH . J 7 HOH A 187 688 702 HOH HOH . J 7 HOH A 188 689 746 HOH HOH . J 7 HOH A 189 690 941 HOH HOH . J 7 HOH A 190 691 782 HOH HOH . J 7 HOH A 191 692 862 HOH HOH . J 7 HOH A 192 693 912 HOH HOH . J 7 HOH A 193 694 964 HOH HOH . J 7 HOH A 194 695 965 HOH HOH . J 7 HOH A 195 696 907 HOH HOH . J 7 HOH A 196 697 812 HOH HOH . J 7 HOH A 197 698 915 HOH HOH . J 7 HOH A 198 699 954 HOH HOH . J 7 HOH A 199 700 901 HOH HOH . J 7 HOH A 200 701 822 HOH HOH . J 7 HOH A 201 702 826 HOH HOH . J 7 HOH A 202 703 897 HOH HOH . J 7 HOH A 203 704 802 HOH HOH . J 7 HOH A 204 705 967 HOH HOH . J 7 HOH A 205 706 947 HOH HOH . J 7 HOH A 206 707 891 HOH HOH . J 7 HOH A 207 708 851 HOH HOH . J 7 HOH A 208 709 824 HOH HOH . J 7 HOH A 209 710 959 HOH HOH . J 7 HOH A 210 711 958 HOH HOH . J 7 HOH A 211 712 930 HOH HOH . J 7 HOH A 212 713 898 HOH HOH . J 7 HOH A 213 714 880 HOH HOH . J 7 HOH A 214 715 961 HOH HOH . J 7 HOH A 215 716 892 HOH HOH . J 7 HOH A 216 717 833 HOH HOH . J 7 HOH A 217 718 813 HOH HOH . J 7 HOH A 218 719 895 HOH HOH . J 7 HOH A 219 720 899 HOH HOH . J 7 HOH A 220 721 844 HOH HOH . J 7 HOH A 221 722 845 HOH HOH . J 7 HOH A 222 723 913 HOH HOH . J 7 HOH A 223 724 950 HOH HOH . J 7 HOH A 224 725 906 HOH HOH . J 7 HOH A 225 726 925 HOH HOH . J 7 HOH A 226 727 870 HOH HOH . J 7 HOH A 227 728 953 HOH HOH . J 7 HOH A 228 729 960 HOH HOH . J 7 HOH A 229 730 928 HOH HOH . J 7 HOH A 230 731 945 HOH HOH . J 7 HOH A 231 732 893 HOH HOH . J 7 HOH A 232 733 869 HOH HOH . J 7 HOH A 233 734 921 HOH HOH . J 7 HOH A 234 735 887 HOH HOH . J 7 HOH A 235 736 944 HOH HOH . J 7 HOH A 236 737 786 HOH HOH . J 7 HOH A 237 738 846 HOH HOH . J 7 HOH A 238 739 943 HOH HOH . J 7 HOH A 239 740 957 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . C 3 -37.96 26.091 -15.535 1 14.81 ? N1 ORO 402 A 1 HETATM 2 C C2 ORO . . . C 3 -36.738 26.508 -15.159 1 15.29 ? C2 ORO 402 A 1 HETATM 3 O O2 ORO . . . C 3 -35.858 26.72 -16.047 1 14.95 ? O2 ORO 402 A 1 HETATM 4 N N3 ORO . . . C 3 -36.458 26.705 -13.851 1 14 ? N3 ORO 402 A 1 HETATM 5 C C4 ORO . . . C 3 -37.371 26.486 -12.884 1 14.47 ? C4 ORO 402 A 1 HETATM 6 O O4 ORO . . . C 3 -37.075 26.686 -11.687 1 13.49 ? O4 ORO 402 A 1 HETATM 7 C C5 ORO . . . C 3 -38.663 26.051 -13.236 1 14.14 ? C5 ORO 402 A 1 HETATM 8 C C6 ORO . . . C 3 -38.907 25.844 -14.592 1 15.11 ? C6 ORO 402 A 1 HETATM 9 C C7 ORO . . . C 3 -40.275 25.497 -15.064 1 15.63 ? C7 ORO 402 A 1 HETATM 10 O O71 ORO . . . C 3 -40.669 26.179 -16.046 1 15.34 ? O71 ORO 402 A 1 HETATM 11 O O72 ORO . . . C 3 -41.012 24.695 -14.472 1 16.26 ? O72 ORO 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #