data_5ZFA # _model_server_result.job_id I_T3BvN3BUeAjY4l02wxTQ _model_server_result.datetime_utc '2024-11-07 02:52:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zfa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5ZFA # _exptl.entry_id 5ZFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZFA _cell.length_a 90.497 _cell.length_b 90.497 _cell.length_c 122.667 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 133 n n N1 C10 FMN doub 134 n n C2 O2 FMN doub 135 n n C2 N3 FMN sing 136 n n N3 C4 FMN sing 137 n n N3 HN3 FMN sing 138 n n C4 O4 FMN doub 139 n n C4 C4A FMN sing 140 n n C4A N5 FMN doub 141 n n C4A C10 FMN sing 142 n n N5 C5A FMN sing 143 n n C5A C6 FMN doub 144 n y C5A C9A FMN sing 145 n y C6 C7 FMN sing 146 n y C6 H6 FMN sing 147 n n C7 C7M FMN sing 148 n n C7 C8 FMN doub 149 n y C7M HM71 FMN sing 150 n n C7M HM72 FMN sing 151 n n C7M HM73 FMN sing 152 n n C8 C8M FMN sing 153 n n C8 C9 FMN sing 154 n y C8M HM81 FMN sing 155 n n C8M HM82 FMN sing 156 n n C8M HM83 FMN sing 157 n n C9 C9A FMN doub 158 n y C9 H9 FMN sing 159 n n C9A N10 FMN sing 160 n n N10 C10 FMN sing 161 n n N10 C1' FMN sing 162 n n C1' C2' FMN sing 163 n n C1' "H1'1" FMN sing 164 n n C1' "H1'2" FMN sing 165 n n C2' O2' FMN sing 166 n n C2' C3' FMN sing 167 n n C2' H2' FMN sing 168 n n O2' HO2' FMN sing 169 n n C3' O3' FMN sing 170 n n C3' C4' FMN sing 171 n n C3' H3' FMN sing 172 n n O3' HO3' FMN sing 173 n n C4' O4' FMN sing 174 n n C4' C5' FMN sing 175 n n C4' H4' FMN sing 176 n n O4' HO4' FMN sing 177 n n C5' O5' FMN sing 178 n n C5' "H5'1" FMN sing 179 n n C5' "H5'2" FMN sing 180 n n O5' P FMN sing 181 n n P O1P FMN doub 182 n n P O2P FMN sing 183 n n P O3P FMN sing 184 n n O2P HOP2 FMN sing 185 n n O3P HOP3 FMN sing 186 n n # _atom_sites.entry_id 5ZFA _atom_sites.fract_transf_matrix[1][1] 0.01105 _atom_sites.fract_transf_matrix[1][2] 0.00638 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 398 FMN FMN . C 3 ORO A 1 402 399 ORO ORO . D 4 ACT A 1 403 401 ACT ACT . E 4 ACT A 1 404 402 ACT ACT . F 4 ACT A 1 405 404 ACT ACT . G 5 SO4 A 1 406 405 SO4 SO4 . H 5 SO4 A 1 407 406 SO4 SO4 . I 5 SO4 A 1 408 407 SO4 SO4 . J 6 9BU A 1 409 501 9BU DRG . K 7 HOH A 1 501 942 HOH HOH . K 7 HOH A 2 502 741 HOH HOH . K 7 HOH A 3 503 875 HOH HOH . K 7 HOH A 4 504 754 HOH HOH . K 7 HOH A 5 505 773 HOH HOH . K 7 HOH A 6 506 836 HOH HOH . K 7 HOH A 7 507 725 HOH HOH . K 7 HOH A 8 508 885 HOH HOH . K 7 HOH A 9 509 718 HOH HOH . K 7 HOH A 10 510 771 HOH HOH . K 7 HOH A 11 511 722 HOH HOH . K 7 HOH A 12 512 714 HOH HOH . K 7 HOH A 13 513 819 HOH HOH . K 7 HOH A 14 514 706 HOH HOH . K 7 HOH A 15 515 858 HOH HOH . K 7 HOH A 16 516 955 HOH HOH . K 7 HOH A 17 517 829 HOH HOH . K 7 HOH A 18 518 728 HOH HOH . K 7 HOH A 19 519 710 HOH HOH . K 7 HOH A 20 520 704 HOH HOH . K 7 HOH A 21 521 905 HOH HOH . K 7 HOH A 22 522 769 HOH HOH . K 7 HOH A 23 523 861 HOH HOH . K 7 HOH A 24 524 840 HOH HOH . K 7 HOH A 25 525 709 HOH HOH . K 7 HOH A 26 526 909 HOH HOH . K 7 HOH A 27 527 730 HOH HOH . K 7 HOH A 28 528 711 HOH HOH . K 7 HOH A 29 529 832 HOH HOH . K 7 HOH A 30 530 838 HOH HOH . K 7 HOH A 31 531 764 HOH HOH . K 7 HOH A 32 532 732 HOH HOH . K 7 HOH A 33 533 749 HOH HOH . K 7 HOH A 34 534 949 HOH HOH . K 7 HOH A 35 535 760 HOH HOH . K 7 HOH A 36 536 713 HOH HOH . K 7 HOH A 37 537 850 HOH HOH . K 7 HOH A 38 538 804 HOH HOH . K 7 HOH A 39 539 860 HOH HOH . K 7 HOH A 40 540 841 HOH HOH . K 7 HOH A 41 541 717 HOH HOH . K 7 HOH A 42 542 847 HOH HOH . K 7 HOH A 43 543 823 HOH HOH . K 7 HOH A 44 544 752 HOH HOH . K 7 HOH A 45 545 796 HOH HOH . K 7 HOH A 46 546 783 HOH HOH . K 7 HOH A 47 547 744 HOH HOH . K 7 HOH A 48 548 772 HOH HOH . K 7 HOH A 49 549 776 HOH HOH . K 7 HOH A 50 550 715 HOH HOH . K 7 HOH A 51 551 768 HOH HOH . K 7 HOH A 52 552 719 HOH HOH . K 7 HOH A 53 553 707 HOH HOH . K 7 HOH A 54 554 825 HOH HOH . K 7 HOH A 55 555 753 HOH HOH . K 7 HOH A 56 556 733 HOH HOH . K 7 HOH A 57 557 731 HOH HOH . K 7 HOH A 58 558 800 HOH HOH . K 7 HOH A 59 559 806 HOH HOH . K 7 HOH A 60 560 951 HOH HOH . K 7 HOH A 61 561 827 HOH HOH . K 7 HOH A 62 562 763 HOH HOH . K 7 HOH A 63 563 948 HOH HOH . K 7 HOH A 64 564 767 HOH HOH . K 7 HOH A 65 565 866 HOH HOH . K 7 HOH A 66 566 828 HOH HOH . K 7 HOH A 67 567 882 HOH HOH . K 7 HOH A 68 568 724 HOH HOH . K 7 HOH A 69 569 820 HOH HOH . K 7 HOH A 70 570 830 HOH HOH . K 7 HOH A 71 571 734 HOH HOH . K 7 HOH A 72 572 877 HOH HOH . K 7 HOH A 73 573 791 HOH HOH . K 7 HOH A 74 574 761 HOH HOH . K 7 HOH A 75 575 747 HOH HOH . K 7 HOH A 76 576 814 HOH HOH . K 7 HOH A 77 577 745 HOH HOH . K 7 HOH A 78 578 920 HOH HOH . K 7 HOH A 79 579 712 HOH HOH . K 7 HOH A 80 580 759 HOH HOH . K 7 HOH A 81 581 743 HOH HOH . K 7 HOH A 82 582 808 HOH HOH . K 7 HOH A 83 583 807 HOH HOH . K 7 HOH A 84 584 867 HOH HOH . K 7 HOH A 85 585 723 HOH HOH . K 7 HOH A 86 586 742 HOH HOH . K 7 HOH A 87 587 790 HOH HOH . K 7 HOH A 88 588 777 HOH HOH . K 7 HOH A 89 589 738 HOH HOH . K 7 HOH A 90 590 833 HOH HOH . K 7 HOH A 91 591 817 HOH HOH . K 7 HOH A 92 592 943 HOH HOH . K 7 HOH A 93 593 803 HOH HOH . K 7 HOH A 94 594 831 HOH HOH . K 7 HOH A 95 595 788 HOH HOH . K 7 HOH A 96 596 770 HOH HOH . K 7 HOH A 97 597 908 HOH HOH . K 7 HOH A 98 598 805 HOH HOH . K 7 HOH A 99 599 798 HOH HOH . K 7 HOH A 100 600 736 HOH HOH . K 7 HOH A 101 601 797 HOH HOH . K 7 HOH A 102 602 780 HOH HOH . K 7 HOH A 103 603 792 HOH HOH . K 7 HOH A 104 604 886 HOH HOH . K 7 HOH A 105 605 859 HOH HOH . K 7 HOH A 106 606 922 HOH HOH . K 7 HOH A 107 607 795 HOH HOH . K 7 HOH A 108 608 762 HOH HOH . K 7 HOH A 109 609 821 HOH HOH . K 7 HOH A 110 610 941 HOH HOH . K 7 HOH A 111 611 868 HOH HOH . K 7 HOH A 112 612 720 HOH HOH . K 7 HOH A 113 613 779 HOH HOH . K 7 HOH A 114 614 758 HOH HOH . K 7 HOH A 115 615 766 HOH HOH . K 7 HOH A 116 616 757 HOH HOH . K 7 HOH A 117 617 865 HOH HOH . K 7 HOH A 118 618 894 HOH HOH . K 7 HOH A 119 619 843 HOH HOH . K 7 HOH A 120 620 924 HOH HOH . K 7 HOH A 121 621 884 HOH HOH . K 7 HOH A 122 622 883 HOH HOH . K 7 HOH A 123 623 835 HOH HOH . K 7 HOH A 124 624 903 HOH HOH . K 7 HOH A 125 625 774 HOH HOH . K 7 HOH A 126 626 748 HOH HOH . K 7 HOH A 127 627 854 HOH HOH . K 7 HOH A 128 628 902 HOH HOH . K 7 HOH A 129 629 755 HOH HOH . K 7 HOH A 130 630 853 HOH HOH . K 7 HOH A 131 631 864 HOH HOH . K 7 HOH A 132 632 857 HOH HOH . K 7 HOH A 133 634 927 HOH HOH . K 7 HOH A 134 635 735 HOH HOH . K 7 HOH A 135 636 750 HOH HOH . K 7 HOH A 136 637 708 HOH HOH . K 7 HOH A 137 638 716 HOH HOH . K 7 HOH A 138 639 705 HOH HOH . K 7 HOH A 139 640 809 HOH HOH . K 7 HOH A 140 641 876 HOH HOH . K 7 HOH A 141 642 931 HOH HOH . K 7 HOH A 142 643 781 HOH HOH . K 7 HOH A 143 644 834 HOH HOH . K 7 HOH A 144 645 901 HOH HOH . K 7 HOH A 145 646 811 HOH HOH . K 7 HOH A 146 647 729 HOH HOH . K 7 HOH A 147 648 873 HOH HOH . K 7 HOH A 148 649 756 HOH HOH . K 7 HOH A 149 650 727 HOH HOH . K 7 HOH A 150 651 818 HOH HOH . K 7 HOH A 151 652 900 HOH HOH . K 7 HOH A 152 653 918 HOH HOH . K 7 HOH A 153 654 839 HOH HOH . K 7 HOH A 154 655 849 HOH HOH . K 7 HOH A 155 656 739 HOH HOH . K 7 HOH A 156 657 785 HOH HOH . K 7 HOH A 157 658 740 HOH HOH . K 7 HOH A 158 659 721 HOH HOH . K 7 HOH A 159 660 888 HOH HOH . K 7 HOH A 160 661 929 HOH HOH . K 7 HOH A 161 662 746 HOH HOH . K 7 HOH A 162 663 914 HOH HOH . K 7 HOH A 163 664 775 HOH HOH . K 7 HOH A 164 665 703 HOH HOH . K 7 HOH A 165 666 737 HOH HOH . K 7 HOH A 166 667 787 HOH HOH . K 7 HOH A 167 668 751 HOH HOH . K 7 HOH A 168 669 910 HOH HOH . K 7 HOH A 169 670 701 HOH HOH . K 7 HOH A 170 671 794 HOH HOH . K 7 HOH A 171 672 912 HOH HOH . K 7 HOH A 172 673 799 HOH HOH . K 7 HOH A 173 674 702 HOH HOH . K 7 HOH A 174 675 782 HOH HOH . K 7 HOH A 175 676 915 HOH HOH . K 7 HOH A 176 677 954 HOH HOH . K 7 HOH A 177 678 801 HOH HOH . K 7 HOH A 178 679 826 HOH HOH . K 7 HOH A 179 680 945 HOH HOH . K 7 HOH A 180 681 907 HOH HOH . K 7 HOH A 181 682 824 HOH HOH . K 7 HOH A 182 683 813 HOH HOH . K 7 HOH A 183 684 891 HOH HOH . K 7 HOH A 184 685 896 HOH HOH . K 7 HOH A 185 686 812 HOH HOH . K 7 HOH A 186 687 862 HOH HOH . K 7 HOH A 187 688 897 HOH HOH . K 7 HOH A 188 689 784 HOH HOH . K 7 HOH A 189 690 890 HOH HOH . K 7 HOH A 190 691 956 HOH HOH . K 7 HOH A 191 692 947 HOH HOH . K 7 HOH A 192 693 802 HOH HOH . K 7 HOH A 193 694 898 HOH HOH . K 7 HOH A 194 695 913 HOH HOH . K 7 HOH A 195 696 899 HOH HOH . K 7 HOH A 196 697 822 HOH HOH . K 7 HOH A 197 698 892 HOH HOH . K 7 HOH A 198 699 930 HOH HOH . K 7 HOH A 199 700 851 HOH HOH . K 7 HOH A 200 701 887 HOH HOH . K 7 HOH A 201 702 844 HOH HOH . K 7 HOH A 202 703 837 HOH HOH . K 7 HOH A 203 704 845 HOH HOH . K 7 HOH A 204 705 870 HOH HOH . K 7 HOH A 205 706 893 HOH HOH . K 7 HOH A 206 707 925 HOH HOH . K 7 HOH A 207 708 928 HOH HOH . K 7 HOH A 208 709 952 HOH HOH . K 7 HOH A 209 710 869 HOH HOH . K 7 HOH A 210 711 921 HOH HOH . K 7 HOH A 211 712 786 HOH HOH . K 7 HOH A 212 713 846 HOH HOH . K 7 HOH A 213 714 944 HOH HOH . K 7 HOH A 214 715 950 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 3.549 42.308 8.632 1 12.15 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 3.106 42.975 9.722 1 13.27 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 3.742 42.828 10.778 1 13.08 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 2.017 43.792 9.686 1 12.56 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 1.283 43.993 8.576 1 13.36 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 0.257 44.721 8.578 1 13.27 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 1.687 43.29 7.342 1 12.58 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 1.032 43.435 6.156 1 13.22 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 1.411 42.755 5.045 1 12.42 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 0.688 42.873 3.85 1 12.55 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 1.098 42.15 2.725 1 12.51 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 0.32 42.27 1.425 1 12.68 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 2.272 41.259 2.801 1 12.65 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 2.727 40.453 1.606 1 13.18 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 2.977 41.123 3.979 1 12.12 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 2.583 41.84 5.116 1 12.21 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 3.304 41.718 6.332 1 12.14 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 2.89 42.422 7.461 1 12.34 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 4.485 40.869 6.44 1 11.49 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 4.134 39.403 6.691 1 11.2 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 3.559 39.285 7.999 1 10.83 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 5.41 38.56 6.646 1 10.73 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 6.31 39.018 7.686 1 10.74 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 6.155 38.654 5.297 1 10.55 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 5.254 38.829 4.185 1 10.8 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 7.067 37.425 5.098 1 10.76 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 6.297 36.228 4.979 1 11.15 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 5.832 35.577 3.569 1 11.92 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 4.718 36.455 3.035 1 11.81 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 5.339 34.212 3.952 1 11.62 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 7.075 35.558 2.702 1 11.64 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #