data_5ZFA
#
_model_server_result.job_id            O43JFekFYssMv2nawXoKew 
_model_server_result.datetime_utc      '2024-11-07 02:58:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zfa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5ZFA 
#
_exptl.entry_id    5ZFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              156.096 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OROTIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ZFA 
_cell.length_a            90.497 
_cell.length_b            90.497 
_cell.length_c            122.667 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H4 N2 O4' 
_chem_comp.formula_weight    156.096 
_chem_comp.id                ORO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OROTIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 ORO sing 341 n y 
N1 C6 ORO sing 342 n y 
N1 HN1 ORO sing 343 n n 
C2 O2 ORO doub 344 n n 
C2 N3 ORO sing 345 n y 
N3 C4 ORO sing 346 n y 
N3 HN3 ORO sing 347 n n 
C4 O4 ORO doub 348 n n 
C4 C5 ORO sing 349 n y 
C5 C6 ORO doub 350 n y 
C5 H5 ORO sing 351 n n 
C6 C7 ORO sing 352 n n 
C7 O71 ORO doub 353 n n 
C7 O72 ORO sing 354 n n 
O72 HO7 ORO sing 355 n n 
#
_atom_sites.entry_id                     5ZFA 
_atom_sites.fract_transf_matrix[1][1]    0.01105 
_atom_sites.fract_transf_matrix[1][2]    0.00638 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01276 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008152 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 401 398 FMN FMN . 
C 3 ORO A 1 402 399 ORO ORO . 
D 4 ACT A 1 403 401 ACT ACT . 
E 4 ACT A 1 404 402 ACT ACT . 
F 4 ACT A 1 405 404 ACT ACT . 
G 5 SO4 A 1 406 405 SO4 SO4 . 
H 5 SO4 A 1 407 406 SO4 SO4 . 
I 5 SO4 A 1 408 407 SO4 SO4 . 
J 6 9BU A 1 409 501 9BU DRG . 
K 7 HOH A 1 501 942 HOH HOH . 
K 7 HOH A 2 502 741 HOH HOH . 
K 7 HOH A 3 503 875 HOH HOH . 
K 7 HOH A 4 504 754 HOH HOH . 
K 7 HOH A 5 505 773 HOH HOH . 
K 7 HOH A 6 506 836 HOH HOH . 
K 7 HOH A 7 507 725 HOH HOH . 
K 7 HOH A 8 508 885 HOH HOH . 
K 7 HOH A 9 509 718 HOH HOH . 
K 7 HOH A 10 510 771 HOH HOH . 
K 7 HOH A 11 511 722 HOH HOH . 
K 7 HOH A 12 512 714 HOH HOH . 
K 7 HOH A 13 513 819 HOH HOH . 
K 7 HOH A 14 514 706 HOH HOH . 
K 7 HOH A 15 515 858 HOH HOH . 
K 7 HOH A 16 516 955 HOH HOH . 
K 7 HOH A 17 517 829 HOH HOH . 
K 7 HOH A 18 518 728 HOH HOH . 
K 7 HOH A 19 519 710 HOH HOH . 
K 7 HOH A 20 520 704 HOH HOH . 
K 7 HOH A 21 521 905 HOH HOH . 
K 7 HOH A 22 522 769 HOH HOH . 
K 7 HOH A 23 523 861 HOH HOH . 
K 7 HOH A 24 524 840 HOH HOH . 
K 7 HOH A 25 525 709 HOH HOH . 
K 7 HOH A 26 526 909 HOH HOH . 
K 7 HOH A 27 527 730 HOH HOH . 
K 7 HOH A 28 528 711 HOH HOH . 
K 7 HOH A 29 529 832 HOH HOH . 
K 7 HOH A 30 530 838 HOH HOH . 
K 7 HOH A 31 531 764 HOH HOH . 
K 7 HOH A 32 532 732 HOH HOH . 
K 7 HOH A 33 533 749 HOH HOH . 
K 7 HOH A 34 534 949 HOH HOH . 
K 7 HOH A 35 535 760 HOH HOH . 
K 7 HOH A 36 536 713 HOH HOH . 
K 7 HOH A 37 537 850 HOH HOH . 
K 7 HOH A 38 538 804 HOH HOH . 
K 7 HOH A 39 539 860 HOH HOH . 
K 7 HOH A 40 540 841 HOH HOH . 
K 7 HOH A 41 541 717 HOH HOH . 
K 7 HOH A 42 542 847 HOH HOH . 
K 7 HOH A 43 543 823 HOH HOH . 
K 7 HOH A 44 544 752 HOH HOH . 
K 7 HOH A 45 545 796 HOH HOH . 
K 7 HOH A 46 546 783 HOH HOH . 
K 7 HOH A 47 547 744 HOH HOH . 
K 7 HOH A 48 548 772 HOH HOH . 
K 7 HOH A 49 549 776 HOH HOH . 
K 7 HOH A 50 550 715 HOH HOH . 
K 7 HOH A 51 551 768 HOH HOH . 
K 7 HOH A 52 552 719 HOH HOH . 
K 7 HOH A 53 553 707 HOH HOH . 
K 7 HOH A 54 554 825 HOH HOH . 
K 7 HOH A 55 555 753 HOH HOH . 
K 7 HOH A 56 556 733 HOH HOH . 
K 7 HOH A 57 557 731 HOH HOH . 
K 7 HOH A 58 558 800 HOH HOH . 
K 7 HOH A 59 559 806 HOH HOH . 
K 7 HOH A 60 560 951 HOH HOH . 
K 7 HOH A 61 561 827 HOH HOH . 
K 7 HOH A 62 562 763 HOH HOH . 
K 7 HOH A 63 563 948 HOH HOH . 
K 7 HOH A 64 564 767 HOH HOH . 
K 7 HOH A 65 565 866 HOH HOH . 
K 7 HOH A 66 566 828 HOH HOH . 
K 7 HOH A 67 567 882 HOH HOH . 
K 7 HOH A 68 568 724 HOH HOH . 
K 7 HOH A 69 569 820 HOH HOH . 
K 7 HOH A 70 570 830 HOH HOH . 
K 7 HOH A 71 571 734 HOH HOH . 
K 7 HOH A 72 572 877 HOH HOH . 
K 7 HOH A 73 573 791 HOH HOH . 
K 7 HOH A 74 574 761 HOH HOH . 
K 7 HOH A 75 575 747 HOH HOH . 
K 7 HOH A 76 576 814 HOH HOH . 
K 7 HOH A 77 577 745 HOH HOH . 
K 7 HOH A 78 578 920 HOH HOH . 
K 7 HOH A 79 579 712 HOH HOH . 
K 7 HOH A 80 580 759 HOH HOH . 
K 7 HOH A 81 581 743 HOH HOH . 
K 7 HOH A 82 582 808 HOH HOH . 
K 7 HOH A 83 583 807 HOH HOH . 
K 7 HOH A 84 584 867 HOH HOH . 
K 7 HOH A 85 585 723 HOH HOH . 
K 7 HOH A 86 586 742 HOH HOH . 
K 7 HOH A 87 587 790 HOH HOH . 
K 7 HOH A 88 588 777 HOH HOH . 
K 7 HOH A 89 589 738 HOH HOH . 
K 7 HOH A 90 590 833 HOH HOH . 
K 7 HOH A 91 591 817 HOH HOH . 
K 7 HOH A 92 592 943 HOH HOH . 
K 7 HOH A 93 593 803 HOH HOH . 
K 7 HOH A 94 594 831 HOH HOH . 
K 7 HOH A 95 595 788 HOH HOH . 
K 7 HOH A 96 596 770 HOH HOH . 
K 7 HOH A 97 597 908 HOH HOH . 
K 7 HOH A 98 598 805 HOH HOH . 
K 7 HOH A 99 599 798 HOH HOH . 
K 7 HOH A 100 600 736 HOH HOH . 
K 7 HOH A 101 601 797 HOH HOH . 
K 7 HOH A 102 602 780 HOH HOH . 
K 7 HOH A 103 603 792 HOH HOH . 
K 7 HOH A 104 604 886 HOH HOH . 
K 7 HOH A 105 605 859 HOH HOH . 
K 7 HOH A 106 606 922 HOH HOH . 
K 7 HOH A 107 607 795 HOH HOH . 
K 7 HOH A 108 608 762 HOH HOH . 
K 7 HOH A 109 609 821 HOH HOH . 
K 7 HOH A 110 610 941 HOH HOH . 
K 7 HOH A 111 611 868 HOH HOH . 
K 7 HOH A 112 612 720 HOH HOH . 
K 7 HOH A 113 613 779 HOH HOH . 
K 7 HOH A 114 614 758 HOH HOH . 
K 7 HOH A 115 615 766 HOH HOH . 
K 7 HOH A 116 616 757 HOH HOH . 
K 7 HOH A 117 617 865 HOH HOH . 
K 7 HOH A 118 618 894 HOH HOH . 
K 7 HOH A 119 619 843 HOH HOH . 
K 7 HOH A 120 620 924 HOH HOH . 
K 7 HOH A 121 621 884 HOH HOH . 
K 7 HOH A 122 622 883 HOH HOH . 
K 7 HOH A 123 623 835 HOH HOH . 
K 7 HOH A 124 624 903 HOH HOH . 
K 7 HOH A 125 625 774 HOH HOH . 
K 7 HOH A 126 626 748 HOH HOH . 
K 7 HOH A 127 627 854 HOH HOH . 
K 7 HOH A 128 628 902 HOH HOH . 
K 7 HOH A 129 629 755 HOH HOH . 
K 7 HOH A 130 630 853 HOH HOH . 
K 7 HOH A 131 631 864 HOH HOH . 
K 7 HOH A 132 632 857 HOH HOH . 
K 7 HOH A 133 634 927 HOH HOH . 
K 7 HOH A 134 635 735 HOH HOH . 
K 7 HOH A 135 636 750 HOH HOH . 
K 7 HOH A 136 637 708 HOH HOH . 
K 7 HOH A 137 638 716 HOH HOH . 
K 7 HOH A 138 639 705 HOH HOH . 
K 7 HOH A 139 640 809 HOH HOH . 
K 7 HOH A 140 641 876 HOH HOH . 
K 7 HOH A 141 642 931 HOH HOH . 
K 7 HOH A 142 643 781 HOH HOH . 
K 7 HOH A 143 644 834 HOH HOH . 
K 7 HOH A 144 645 901 HOH HOH . 
K 7 HOH A 145 646 811 HOH HOH . 
K 7 HOH A 146 647 729 HOH HOH . 
K 7 HOH A 147 648 873 HOH HOH . 
K 7 HOH A 148 649 756 HOH HOH . 
K 7 HOH A 149 650 727 HOH HOH . 
K 7 HOH A 150 651 818 HOH HOH . 
K 7 HOH A 151 652 900 HOH HOH . 
K 7 HOH A 152 653 918 HOH HOH . 
K 7 HOH A 153 654 839 HOH HOH . 
K 7 HOH A 154 655 849 HOH HOH . 
K 7 HOH A 155 656 739 HOH HOH . 
K 7 HOH A 156 657 785 HOH HOH . 
K 7 HOH A 157 658 740 HOH HOH . 
K 7 HOH A 158 659 721 HOH HOH . 
K 7 HOH A 159 660 888 HOH HOH . 
K 7 HOH A 160 661 929 HOH HOH . 
K 7 HOH A 161 662 746 HOH HOH . 
K 7 HOH A 162 663 914 HOH HOH . 
K 7 HOH A 163 664 775 HOH HOH . 
K 7 HOH A 164 665 703 HOH HOH . 
K 7 HOH A 165 666 737 HOH HOH . 
K 7 HOH A 166 667 787 HOH HOH . 
K 7 HOH A 167 668 751 HOH HOH . 
K 7 HOH A 168 669 910 HOH HOH . 
K 7 HOH A 169 670 701 HOH HOH . 
K 7 HOH A 170 671 794 HOH HOH . 
K 7 HOH A 171 672 912 HOH HOH . 
K 7 HOH A 172 673 799 HOH HOH . 
K 7 HOH A 173 674 702 HOH HOH . 
K 7 HOH A 174 675 782 HOH HOH . 
K 7 HOH A 175 676 915 HOH HOH . 
K 7 HOH A 176 677 954 HOH HOH . 
K 7 HOH A 177 678 801 HOH HOH . 
K 7 HOH A 178 679 826 HOH HOH . 
K 7 HOH A 179 680 945 HOH HOH . 
K 7 HOH A 180 681 907 HOH HOH . 
K 7 HOH A 181 682 824 HOH HOH . 
K 7 HOH A 182 683 813 HOH HOH . 
K 7 HOH A 183 684 891 HOH HOH . 
K 7 HOH A 184 685 896 HOH HOH . 
K 7 HOH A 185 686 812 HOH HOH . 
K 7 HOH A 186 687 862 HOH HOH . 
K 7 HOH A 187 688 897 HOH HOH . 
K 7 HOH A 188 689 784 HOH HOH . 
K 7 HOH A 189 690 890 HOH HOH . 
K 7 HOH A 190 691 956 HOH HOH . 
K 7 HOH A 191 692 947 HOH HOH . 
K 7 HOH A 192 693 802 HOH HOH . 
K 7 HOH A 193 694 898 HOH HOH . 
K 7 HOH A 194 695 913 HOH HOH . 
K 7 HOH A 195 696 899 HOH HOH . 
K 7 HOH A 196 697 822 HOH HOH . 
K 7 HOH A 197 698 892 HOH HOH . 
K 7 HOH A 198 699 930 HOH HOH . 
K 7 HOH A 199 700 851 HOH HOH . 
K 7 HOH A 200 701 887 HOH HOH . 
K 7 HOH A 201 702 844 HOH HOH . 
K 7 HOH A 202 703 837 HOH HOH . 
K 7 HOH A 203 704 845 HOH HOH . 
K 7 HOH A 204 705 870 HOH HOH . 
K 7 HOH A 205 706 893 HOH HOH . 
K 7 HOH A 206 707 925 HOH HOH . 
K 7 HOH A 207 708 928 HOH HOH . 
K 7 HOH A 208 709 952 HOH HOH . 
K 7 HOH A 209 710 869 HOH HOH . 
K 7 HOH A 210 711 921 HOH HOH . 
K 7 HOH A 211 712 786 HOH HOH . 
K 7 HOH A 212 713 846 HOH HOH . 
K 7 HOH A 213 714 944 HOH HOH . 
K 7 HOH A 214 715 950 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 ORO . . . C 3 3.607 45.874 4.929 1 13.02 ? N1 ORO 402 A 1 
HETATM 2 C C2 ORO . . . C 3 4.575 45.019 5.31 1 13.46 ? C2 ORO 402 A 1 
HETATM 3 O O2 ORO . . . C 3 5.187 44.375 4.418 1 13.19 ? O2 ORO 402 A 1 
HETATM 4 N N3 ORO . . . C 3 4.903 44.868 6.617 1 12.53 ? N3 ORO 402 A 1 
HETATM 5 C C4 ORO . . . C 3 4.267 45.549 7.573 1 12.99 ? C4 ORO 402 A 1 
HETATM 6 O O4 ORO . . . C 3 4.586 45.395 8.772 1 12.65 ? O4 ORO 402 A 1 
HETATM 7 C C5 ORO . . . C 3 3.251 46.459 7.215 1 12.79 ? C5 ORO 402 A 1 
HETATM 8 C C6 ORO . . . C 3 2.932 46.567 5.87 1 13.76 ? C6 ORO 402 A 1 
HETATM 9 C C7 ORO . . . C 3 1.953 47.582 5.4 1 14.23 ? C7 ORO 402 A 1 
HETATM 10 O O71 ORO . . . C 3 2.371 48.279 4.424 1 14.13 ? O71 ORO 402 A 1 
HETATM 11 O O72 ORO . . . C 3 0.881 47.8 5.988 1 14.85 ? O72 ORO 402 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           11 
#