data_5ZFB # _model_server_result.job_id OWPOi000GYXEoXwPxRBL6w _model_server_result.datetime_utc '2024-10-19 15:39:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":409}' # _entry.id 5ZFB # _exptl.entry_id 5ZFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.926 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-chloro-4,6-dihydroxy-5-[(2Z,6Z,8E)-11-hydroxy-3,7,11-trimethyl-10-oxododeca-2,6,8-trien-1-yl]-2-methylbenzaldehyde _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZFB _cell.length_a 90.323 _cell.length_b 90.323 _cell.length_c 123.71 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H29 Cl O5' _chem_comp.formula_weight 420.926 _chem_comp.id 9BX _chem_comp.mon_nstd_flag . _chem_comp.name 3-chloro-4,6-dihydroxy-5-[(2Z,6Z,8E)-11-hydroxy-3,7,11-trimethyl-10-oxododeca-2,6,8-trien-1-yl]-2-methylbenzaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAU CAT 9BX sing 1 n n OBC CBB 9BX doub 2 n n CBB CBA 9BX sing 3 n n OAX CAS 9BX doub 4 n n CAT CAW 9BX sing 5 n n CAT CAS 9BX sing 6 n n CAT OAV 9BX sing 7 n n CAS CAR 9BX sing 8 n n OAZ CAY 9BX sing 9 n n CBA CAY 9BX doub 10 n y CBA CAB 9BX sing 11 n y CAA CAB 9BX sing 12 n n CAY CAG 9BX sing 13 n y CAR CAQ 9BX doub 14 e n CAB CAC 9BX doub 15 n y CAQ CAO 9BX sing 16 n n CAG CAH 9BX sing 17 n n CAG CAE 9BX doub 18 n y CAC CAE 9BX sing 19 n y CAC CLA 9BX sing 20 n n CAH CAI 9BX sing 21 n n CAO CAP 9BX sing 22 n n CAO CAN 9BX doub 23 z n CAM CAL 9BX sing 24 n n CAM CAN 9BX sing 25 n n CAE OAF 9BX sing 26 n n CAL CAJ 9BX sing 27 n n CAI CAJ 9BX doub 28 z n CAJ CAK 9BX sing 29 n n CAU H1 9BX sing 30 n n CAU H2 9BX sing 31 n n CAU H3 9BX sing 32 n n CAW H4 9BX sing 33 n n CAW H5 9BX sing 34 n n CAW H6 9BX sing 35 n n OAV H7 9BX sing 36 n n CAR H8 9BX sing 37 n n CAQ H10 9BX sing 38 n n CAP H11 9BX sing 39 n n CAP H12 9BX sing 40 n n CAP H13 9BX sing 41 n n CAN H14 9BX sing 42 n n CAM H16 9BX sing 43 n n CAM H17 9BX sing 44 n n CAL H18 9BX sing 45 n n CAL H19 9BX sing 46 n n CAK H21 9BX sing 47 n n CAK H22 9BX sing 48 n n CAK H23 9BX sing 49 n n CAI H24 9BX sing 50 n n CAH H26 9BX sing 51 n n CAH H27 9BX sing 52 n n OAZ H28 9BX sing 53 n n CBB H29 9BX sing 54 n n CAA H30 9BX sing 55 n n CAA H31 9BX sing 56 n n CAA H32 9BX sing 57 n n OAF H33 9BX sing 58 n n # _atom_sites.entry_id 5ZFB _atom_sites.fract_transf_matrix[1][1] 0.011071 _atom_sites.fract_transf_matrix[1][2] 0.006392 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 398 FMN FMN . C 3 ORO A 1 402 399 ORO ORO . D 4 ACT A 1 403 401 ACT ACT . E 5 SO4 A 1 404 402 SO4 SO4 . F 5 SO4 A 1 405 403 SO4 SO4 . G 5 SO4 A 1 406 404 SO4 SO4 . H 5 SO4 A 1 407 406 SO4 SO4 . I 5 SO4 A 1 408 407 SO4 SO4 . J 6 9BX A 1 409 501 9BX DRG . K 5 SO4 A 1 410 1 SO4 SO4 . L 7 HOH A 1 501 783 HOH HOH . L 7 HOH A 2 502 948 HOH HOH . L 7 HOH A 3 503 776 HOH HOH . L 7 HOH A 4 504 836 HOH HOH . L 7 HOH A 5 505 704 HOH HOH . L 7 HOH A 6 506 732 HOH HOH . L 7 HOH A 7 507 773 HOH HOH . L 7 HOH A 8 508 861 HOH HOH . L 7 HOH A 9 509 706 HOH HOH . L 7 HOH A 10 510 754 HOH HOH . L 7 HOH A 11 511 963 HOH HOH . L 7 HOH A 12 512 710 HOH HOH . L 7 HOH A 13 513 714 HOH HOH . L 7 HOH A 14 514 749 HOH HOH . L 7 HOH A 15 515 958 HOH HOH . L 7 HOH A 16 516 838 HOH HOH . L 7 HOH A 17 517 819 HOH HOH . L 7 HOH A 18 518 722 HOH HOH . L 7 HOH A 19 519 718 HOH HOH . L 7 HOH A 20 520 724 HOH HOH . L 7 HOH A 21 521 829 HOH HOH . L 7 HOH A 22 522 711 HOH HOH . L 7 HOH A 23 523 840 HOH HOH . L 7 HOH A 24 524 803 HOH HOH . L 7 HOH A 25 525 796 HOH HOH . L 7 HOH A 26 526 752 HOH HOH . L 7 HOH A 27 527 742 HOH HOH . L 7 HOH A 28 528 791 HOH HOH . L 7 HOH A 29 529 768 HOH HOH . L 7 HOH A 30 530 841 HOH HOH . L 7 HOH A 31 531 709 HOH HOH . L 7 HOH A 32 532 719 HOH HOH . L 7 HOH A 33 533 736 HOH HOH . L 7 HOH A 34 534 733 HOH HOH . L 7 HOH A 35 535 725 HOH HOH . L 7 HOH A 36 536 781 HOH HOH . L 7 HOH A 37 537 810 HOH HOH . L 7 HOH A 38 538 885 HOH HOH . L 7 HOH A 39 539 763 HOH HOH . L 7 HOH A 40 540 905 HOH HOH . L 7 HOH A 41 541 744 HOH HOH . L 7 HOH A 42 542 764 HOH HOH . L 7 HOH A 43 543 932 HOH HOH . L 7 HOH A 44 544 832 HOH HOH . L 7 HOH A 45 545 769 HOH HOH . L 7 HOH A 46 546 866 HOH HOH . L 7 HOH A 47 547 753 HOH HOH . L 7 HOH A 48 548 772 HOH HOH . L 7 HOH A 49 549 827 HOH HOH . L 7 HOH A 50 550 757 HOH HOH . L 7 HOH A 51 551 743 HOH HOH . L 7 HOH A 52 552 729 HOH HOH . L 7 HOH A 53 553 858 HOH HOH . L 7 HOH A 54 554 908 HOH HOH . L 7 HOH A 55 555 730 HOH HOH . L 7 HOH A 56 556 713 HOH HOH . L 7 HOH A 57 557 831 HOH HOH . L 7 HOH A 58 558 946 HOH HOH . L 7 HOH A 59 559 780 HOH HOH . L 7 HOH A 60 560 731 HOH HOH . L 7 HOH A 61 561 767 HOH HOH . L 7 HOH A 62 562 741 HOH HOH . L 7 HOH A 63 563 728 HOH HOH . L 7 HOH A 64 564 738 HOH HOH . L 7 HOH A 65 565 951 HOH HOH . L 7 HOH A 66 566 715 HOH HOH . L 7 HOH A 67 567 734 HOH HOH . L 7 HOH A 68 568 820 HOH HOH . L 7 HOH A 69 569 707 HOH HOH . L 7 HOH A 70 570 712 HOH HOH . L 7 HOH A 71 571 777 HOH HOH . L 7 HOH A 72 572 745 HOH HOH . L 7 HOH A 73 573 771 HOH HOH . L 7 HOH A 74 574 750 HOH HOH . L 7 HOH A 75 575 705 HOH HOH . L 7 HOH A 76 576 877 HOH HOH . L 7 HOH A 77 577 957 HOH HOH . L 7 HOH A 78 578 814 HOH HOH . L 7 HOH A 79 579 849 HOH HOH . L 7 HOH A 80 580 808 HOH HOH . L 7 HOH A 81 581 931 HOH HOH . L 7 HOH A 82 582 942 HOH HOH . L 7 HOH A 83 583 723 HOH HOH . L 7 HOH A 84 584 823 HOH HOH . L 7 HOH A 85 585 804 HOH HOH . L 7 HOH A 86 586 756 HOH HOH . L 7 HOH A 87 587 717 HOH HOH . L 7 HOH A 88 588 779 HOH HOH . L 7 HOH A 89 589 790 HOH HOH . L 7 HOH A 90 590 915 HOH HOH . L 7 HOH A 91 591 765 HOH HOH . L 7 HOH A 92 592 795 HOH HOH . L 7 HOH A 93 593 758 HOH HOH . L 7 HOH A 94 594 761 HOH HOH . L 7 HOH A 95 595 720 HOH HOH . L 7 HOH A 96 596 891 HOH HOH . L 7 HOH A 97 597 817 HOH HOH . L 7 HOH A 98 598 868 HOH HOH . L 7 HOH A 99 599 864 HOH HOH . L 7 HOH A 100 600 821 HOH HOH . L 7 HOH A 101 601 900 HOH HOH . L 7 HOH A 102 602 813 HOH HOH . L 7 HOH A 103 603 735 HOH HOH . L 7 HOH A 104 604 959 HOH HOH . L 7 HOH A 105 605 807 HOH HOH . L 7 HOH A 106 606 854 HOH HOH . L 7 HOH A 107 607 882 HOH HOH . L 7 HOH A 108 608 857 HOH HOH . L 7 HOH A 109 609 884 HOH HOH . L 7 HOH A 110 610 708 HOH HOH . L 7 HOH A 111 611 748 HOH HOH . L 7 HOH A 112 612 739 HOH HOH . L 7 HOH A 113 613 799 HOH HOH . L 7 HOH A 114 614 853 HOH HOH . L 7 HOH A 115 615 933 HOH HOH . L 7 HOH A 116 616 806 HOH HOH . L 7 HOH A 117 617 924 HOH HOH . L 7 HOH A 118 618 785 HOH HOH . L 7 HOH A 119 619 876 HOH HOH . L 7 HOH A 120 620 843 HOH HOH . L 7 HOH A 121 621 809 HOH HOH . L 7 HOH A 122 622 737 HOH HOH . L 7 HOH A 123 623 793 HOH HOH . L 7 HOH A 124 624 824 HOH HOH . L 7 HOH A 125 625 760 HOH HOH . L 7 HOH A 126 626 805 HOH HOH . L 7 HOH A 127 627 755 HOH HOH . L 7 HOH A 128 628 716 HOH HOH . L 7 HOH A 129 629 792 HOH HOH . L 7 HOH A 130 630 956 HOH HOH . L 7 HOH A 131 631 811 HOH HOH . L 7 HOH A 132 632 794 HOH HOH . L 7 HOH A 133 633 929 HOH HOH . L 7 HOH A 134 634 798 HOH HOH . L 7 HOH A 135 635 883 HOH HOH . L 7 HOH A 136 636 818 HOH HOH . L 7 HOH A 137 637 774 HOH HOH . L 7 HOH A 138 638 740 HOH HOH . L 7 HOH A 139 639 746 HOH HOH . L 7 HOH A 140 640 751 HOH HOH . L 7 HOH A 141 641 703 HOH HOH . L 7 HOH A 142 642 775 HOH HOH . L 7 HOH A 143 643 833 HOH HOH . L 7 HOH A 144 644 812 HOH HOH . L 7 HOH A 145 645 897 HOH HOH . L 7 HOH A 146 646 787 HOH HOH . L 7 HOH A 147 647 955 HOH HOH . L 7 HOH A 148 648 962 HOH HOH . L 7 HOH A 149 649 881 HOH HOH . L 7 HOH A 150 650 797 HOH HOH . L 7 HOH A 151 651 727 HOH HOH . L 7 HOH A 152 652 945 HOH HOH . L 7 HOH A 153 653 907 HOH HOH . L 7 HOH A 154 654 941 HOH HOH . L 7 HOH A 155 655 815 HOH HOH . L 7 HOH A 156 656 851 HOH HOH . L 7 HOH A 157 657 952 HOH HOH . L 7 HOH A 158 658 702 HOH HOH . L 7 HOH A 159 659 778 HOH HOH . L 7 HOH A 160 660 910 HOH HOH . L 7 HOH A 161 661 901 HOH HOH . L 7 HOH A 162 662 834 HOH HOH . L 7 HOH A 163 663 949 HOH HOH . L 7 HOH A 164 664 954 HOH HOH . L 7 HOH A 165 665 802 HOH HOH . L 7 HOH A 166 666 890 HOH HOH . L 7 HOH A 167 667 898 HOH HOH . L 7 HOH A 168 668 899 HOH HOH . L 7 HOH A 169 669 892 HOH HOH . L 7 HOH A 170 670 950 HOH HOH . L 7 HOH A 171 671 826 HOH HOH . L 7 HOH A 172 672 930 HOH HOH . L 7 HOH A 173 673 964 HOH HOH . L 7 HOH A 174 674 943 HOH HOH . L 7 HOH A 175 675 896 HOH HOH . L 7 HOH A 176 676 925 HOH HOH . L 7 HOH A 177 677 947 HOH HOH . L 7 HOH A 178 678 893 HOH HOH . L 7 HOH A 179 679 921 HOH HOH . L 7 HOH A 180 680 846 HOH HOH . L 7 HOH A 181 681 928 HOH HOH . L 7 HOH A 182 682 786 HOH HOH . L 7 HOH A 183 683 953 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAU 9BX . . . J 6 25.297 -22.148 19.433 0.5 58.23 ? CAU 9BX 409 A 1 HETATM 2 C CAT 9BX . . . J 6 25.106 -21.981 20.938 0.5 59.27 ? CAT 9BX 409 A 1 HETATM 3 C CAW 9BX . . . J 6 24.736 -20.554 21.21 0.5 58.94 ? CAW 9BX 409 A 1 HETATM 4 O OAV 9BX . . . J 6 26.318 -22.231 21.654 0.5 61.12 ? OAV 9BX 409 A 1 HETATM 5 C CAS 9BX . . . J 6 23.963 -22.888 21.405 0.5 60.25 ? CAS 9BX 409 A 1 HETATM 6 O OAX 9BX . . . J 6 22.954 -23.053 20.724 0.5 63.32 ? OAX 9BX 409 A 1 HETATM 7 C CAR 9BX . . . J 6 24.118 -23.585 22.752 0.5 61.18 ? CAR 9BX 409 A 1 HETATM 8 C CAQ 9BX . . . J 6 22.915 -24.457 23.123 0.5 62.15 ? CAQ 9BX 409 A 1 HETATM 9 C CAO 9BX . . . J 6 23.024 -25.182 24.462 0.5 61.76 ? CAO 9BX 409 A 1 HETATM 10 C CAP 9BX . . . J 6 21.885 -26.091 24.935 0.5 62.52 ? CAP 9BX 409 A 1 HETATM 11 C CAN 9BX . . . J 6 24.286 -25.014 25.315 0.5 59.9 ? CAN 9BX 409 A 1 HETATM 12 C CAM 9BX . . . J 6 25.347 -24.079 24.736 0.5 55.09 ? CAM 9BX 409 A 1 HETATM 13 C CAL 9BX . . . J 6 26.735 -24.532 25.184 0.5 49.04 ? CAL 9BX 409 A 1 HETATM 14 C CAJ 9BX . . . J 6 27.319 -23.563 26.217 0.5 44.78 ? CAJ 9BX 409 A 1 HETATM 15 C CAK 9BX . . . J 6 27.135 -23.841 27.684 0.5 46.09 ? CAK 9BX 409 A 1 HETATM 16 C CAI 9BX . . . J 6 28.193 -22.385 25.805 0.5 41.87 ? CAI 9BX 409 A 1 HETATM 17 C CAH 9BX . . . J 6 28.337 -22.245 24.311 0.5 36.37 ? CAH 9BX 409 A 1 HETATM 18 C CAG 9BX . . . J 6 29.671 -22.109 23.935 0.5 32.88 ? CAG 9BX 409 A 1 HETATM 19 C CAY 9BX . . . J 6 29.937 -22.298 22.598 0.5 31.44 ? CAY 9BX 409 A 1 HETATM 20 O OAZ 9BX . . . J 6 28.908 -22.588 21.767 0.5 28.76 ? OAZ 9BX 409 A 1 HETATM 21 C CBA 9BX . . . J 6 31.201 -22.191 22.061 0.5 31.65 ? CBA 9BX 409 A 1 HETATM 22 C CBB 9BX . . . J 6 31.357 -22.392 20.709 0.5 30.43 ? CBB 9BX 409 A 1 HETATM 23 O OBC 9BX . . . J 6 30.428 -22.877 20.073 0.5 29.07 ? OBC 9BX 409 A 1 HETATM 24 C CAB 9BX . . . J 6 32.272 -21.885 22.887 0.5 32.15 ? CAB 9BX 409 A 1 HETATM 25 C CAA 9BX . . . J 6 33.561 -21.765 22.376 0.5 31.56 ? CAA 9BX 409 A 1 HETATM 26 C CAC 9BX . . . J 6 32.049 -21.695 24.24 0.5 32.14 ? CAC 9BX 409 A 1 HETATM 27 CL CLA 9BX . . . J 6 33.403 -21.306 25.181 0.5 35.44 ? CLA 9BX 409 A 1 HETATM 28 C CAE 9BX . . . J 6 30.76 -21.802 24.772 0.5 32.33 ? CAE 9BX 409 A 1 HETATM 29 O OAF 9BX . . . J 6 30.587 -21.605 26.125 0.5 27.52 ? OAF 9BX 409 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 29 #