data_5ZFK # _model_server_result.job_id zRkkbPZn4gI3z7qfvemNYQ _model_server_result.datetime_utc '2025-04-10 00:42:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5ZFK # _exptl.entry_id 5ZFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.161 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "URIDINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.96 _cell.angle_gamma 90 _cell.entry_id 5ZFK _cell.length_a 168.37 _cell.length_b 79.984 _cell.length_c 53.827 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 126 A SER 127 1_555 A N MSE 127 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A C MSE 127 A MSE 128 1_555 A N GLY 128 A GLY 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A C VAL 133 A VAL 134 1_555 A N MSE 134 A MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C MSE 134 A MSE 135 1_555 A N ASP 135 A ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C LEU 260 A LEU 261 1_555 A N MSE 261 A MSE 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C MSE 261 A MSE 262 1_555 A N THR 262 A THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C ALA 339 A ALA 340 1_555 A N MSE 340 A MSE 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale8 A C MSE 340 A MSE 341 1_555 A N GLY 341 A GLY 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C SER 126 B SER 127 1_555 B N MSE 127 B MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale10 B C MSE 127 B MSE 128 1_555 B N GLY 128 B GLY 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale11 B C VAL 133 B VAL 134 1_555 B N MSE 134 B MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale12 B C MSE 134 B MSE 135 1_555 B N ASP 135 B ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 B C LEU 260 B LEU 261 1_555 B N MSE 261 B MSE 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 B C MSE 261 B MSE 262 1_555 B N THR 262 B THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale15 B C ALA 339 B ALA 340 1_555 B N MSE 340 B MSE 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 B C MSE 340 B MSE 341 1_555 B N GLY 341 B GLY 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C9 H14 N2 O12 P2' _chem_comp.formula_weight 404.161 _chem_comp.id UDP _chem_comp.mon_nstd_flag . _chem_comp.name "URIDINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 UDP sing 389 n n N1 C6 UDP sing 390 n n N1 C1' UDP sing 391 n n C2 N3 UDP sing 392 n n C2 O2 UDP doub 393 n n N3 C4 UDP sing 394 n n N3 HN3 UDP sing 395 n n C4 C5 UDP sing 396 n n C4 O4 UDP doub 397 n n C5 C6 UDP doub 398 n n C5 H5 UDP sing 399 n n C6 H6 UDP sing 400 n n C1' C2' UDP sing 401 n n C1' O4' UDP sing 402 n n C1' H1' UDP sing 403 n n C2' O2' UDP sing 404 n n C2' C3' UDP sing 405 n n C2' H2' UDP sing 406 n n O2' HO2' UDP sing 407 n n C3' C4' UDP sing 408 n n C3' O3' UDP sing 409 n n C3' H3' UDP sing 410 n n C4' O4' UDP sing 411 n n C4' C5' UDP sing 412 n n C4' H4' UDP sing 413 n n O3' HO3' UDP sing 414 n n C5' O5' UDP sing 415 n n C5' "H5'1" UDP sing 416 n n C5' "H5'2" UDP sing 417 n n O5' PA UDP sing 418 n n PA O1A UDP doub 419 n n PA O2A UDP sing 420 n n PA O3A UDP sing 421 n n O2A HOA2 UDP sing 422 n n O3A PB UDP sing 423 n n PB O1B UDP doub 424 n n PB O2B UDP sing 425 n n PB O3B UDP sing 426 n n O2B HOB2 UDP sing 427 n n O3B HOB3 UDP sing 428 n n # _atom_sites.entry_id 5ZFK _atom_sites.fract_transf_matrix[1][1] 0.005939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UDP A 1 401 500 UDP UDP . D 4 HBI A 1 402 600 HBI HBI . E 4 HBI B 1 600 600 HBI HBI . F 5 HOH A 1 501 95 HOH HOH . F 5 HOH A 2 502 154 HOH HOH . F 5 HOH A 3 503 106 HOH HOH . F 5 HOH A 4 504 74 HOH HOH . F 5 HOH A 5 505 44 HOH HOH . F 5 HOH A 6 506 152 HOH HOH . F 5 HOH A 7 507 154 HOH HOH . F 5 HOH A 8 508 130 HOH HOH . F 5 HOH A 9 509 157 HOH HOH . F 5 HOH A 10 510 37 HOH HOH . F 5 HOH A 11 511 155 HOH HOH . F 5 HOH A 12 512 47 HOH HOH . F 5 HOH A 13 513 124 HOH HOH . F 5 HOH A 14 514 155 HOH HOH . F 5 HOH A 15 515 303 HOH HOH . F 5 HOH A 16 516 301 HOH HOH . F 5 HOH A 17 517 80 HOH HOH . F 5 HOH A 18 518 68 HOH HOH . F 5 HOH A 19 519 274 HOH HOH . F 5 HOH A 20 520 158 HOH HOH . F 5 HOH A 21 521 89 HOH HOH . F 5 HOH A 22 522 139 HOH HOH . F 5 HOH A 23 523 304 HOH HOH . F 5 HOH A 24 524 55 HOH HOH . F 5 HOH A 25 525 145 HOH HOH . F 5 HOH A 26 526 37 HOH HOH . F 5 HOH A 27 527 78 HOH HOH . F 5 HOH A 28 528 96 HOH HOH . F 5 HOH A 29 529 91 HOH HOH . F 5 HOH A 30 530 40 HOH HOH . F 5 HOH A 31 531 21 HOH HOH . F 5 HOH A 32 532 107 HOH HOH . F 5 HOH A 33 533 126 HOH HOH . F 5 HOH A 34 534 104 HOH HOH . F 5 HOH A 35 535 142 HOH HOH . F 5 HOH A 36 536 305 HOH HOH . F 5 HOH A 37 537 9 HOH HOH . F 5 HOH A 38 538 153 HOH HOH . F 5 HOH A 39 539 202 HOH HOH . F 5 HOH A 40 540 102 HOH HOH . F 5 HOH A 41 541 111 HOH HOH . F 5 HOH A 42 542 109 HOH HOH . F 5 HOH A 43 543 317 HOH HOH . F 5 HOH A 44 544 183 HOH HOH . F 5 HOH A 45 545 101 HOH HOH . F 5 HOH A 46 546 241 HOH HOH . F 5 HOH A 47 547 136 HOH HOH . F 5 HOH A 48 548 171 HOH HOH . F 5 HOH A 49 549 58 HOH HOH . F 5 HOH A 50 550 41 HOH HOH . F 5 HOH A 51 551 7 HOH HOH . F 5 HOH A 52 552 312 HOH HOH . F 5 HOH A 53 553 249 HOH HOH . F 5 HOH A 54 554 33 HOH HOH . F 5 HOH A 55 555 81 HOH HOH . F 5 HOH A 56 556 141 HOH HOH . F 5 HOH A 57 557 278 HOH HOH . F 5 HOH A 58 558 57 HOH HOH . F 5 HOH A 59 559 191 HOH HOH . F 5 HOH A 60 560 120 HOH HOH . F 5 HOH A 61 561 26 HOH HOH . F 5 HOH A 62 562 82 HOH HOH . F 5 HOH A 63 563 75 HOH HOH . F 5 HOH A 64 564 308 HOH HOH . F 5 HOH A 65 565 22 HOH HOH . F 5 HOH A 66 566 73 HOH HOH . F 5 HOH A 67 567 5 HOH HOH . F 5 HOH A 68 568 158 HOH HOH . F 5 HOH A 69 569 13 HOH HOH . F 5 HOH A 70 570 58 HOH HOH . F 5 HOH A 71 571 108 HOH HOH . F 5 HOH A 72 572 161 HOH HOH . F 5 HOH A 73 573 184 HOH HOH . F 5 HOH A 74 574 34 HOH HOH . F 5 HOH A 75 575 67 HOH HOH . F 5 HOH A 76 576 20 HOH HOH . F 5 HOH A 77 577 174 HOH HOH . F 5 HOH A 78 578 45 HOH HOH . F 5 HOH A 79 579 16 HOH HOH . F 5 HOH A 80 580 4 HOH HOH . F 5 HOH A 81 581 73 HOH HOH . F 5 HOH A 82 582 1 HOH HOH . F 5 HOH A 83 583 210 HOH HOH . F 5 HOH A 84 584 10 HOH HOH . F 5 HOH A 85 585 30 HOH HOH . F 5 HOH A 86 586 102 HOH HOH . F 5 HOH A 87 587 146 HOH HOH . F 5 HOH A 88 588 121 HOH HOH . F 5 HOH A 89 589 46 HOH HOH . F 5 HOH A 90 590 181 HOH HOH . F 5 HOH A 91 591 97 HOH HOH . F 5 HOH A 92 592 193 HOH HOH . F 5 HOH A 93 593 85 HOH HOH . F 5 HOH A 94 594 164 HOH HOH . F 5 HOH A 95 595 196 HOH HOH . F 5 HOH A 96 596 28 HOH HOH . F 5 HOH A 97 597 35 HOH HOH . F 5 HOH A 98 598 310 HOH HOH . F 5 HOH A 99 599 307 HOH HOH . F 5 HOH A 100 600 19 HOH HOH . F 5 HOH A 101 601 141 HOH HOH . F 5 HOH A 102 602 136 HOH HOH . F 5 HOH A 103 603 109 HOH HOH . F 5 HOH A 104 604 17 HOH HOH . F 5 HOH A 105 605 216 HOH HOH . F 5 HOH A 106 606 293 HOH HOH . F 5 HOH A 107 607 239 HOH HOH . F 5 HOH A 108 608 76 HOH HOH . F 5 HOH A 109 609 56 HOH HOH . F 5 HOH A 110 610 42 HOH HOH . F 5 HOH A 111 611 79 HOH HOH . F 5 HOH A 112 612 68 HOH HOH . F 5 HOH A 113 613 144 HOH HOH . F 5 HOH A 114 614 71 HOH HOH . F 5 HOH A 115 615 17 HOH HOH . F 5 HOH A 116 616 122 HOH HOH . F 5 HOH A 117 617 77 HOH HOH . F 5 HOH A 118 618 92 HOH HOH . F 5 HOH A 119 619 203 HOH HOH . F 5 HOH A 120 620 91 HOH HOH . F 5 HOH A 121 621 60 HOH HOH . F 5 HOH A 122 622 106 HOH HOH . F 5 HOH A 123 623 118 HOH HOH . F 5 HOH A 124 624 195 HOH HOH . F 5 HOH A 125 625 260 HOH HOH . F 5 HOH A 126 626 159 HOH HOH . F 5 HOH A 127 627 128 HOH HOH . F 5 HOH A 128 628 183 HOH HOH . F 5 HOH A 129 629 10 HOH HOH . F 5 HOH A 130 630 55 HOH HOH . F 5 HOH A 131 631 110 HOH HOH . F 5 HOH A 132 632 39 HOH HOH . F 5 HOH A 133 633 143 HOH HOH . F 5 HOH A 134 634 257 HOH HOH . F 5 HOH A 135 635 86 HOH HOH . F 5 HOH A 136 636 61 HOH HOH . F 5 HOH A 137 637 3 HOH HOH . F 5 HOH A 138 638 177 HOH HOH . F 5 HOH A 139 639 100 HOH HOH . F 5 HOH A 140 640 74 HOH HOH . F 5 HOH A 141 641 94 HOH HOH . F 5 HOH A 142 642 117 HOH HOH . F 5 HOH A 143 643 271 HOH HOH . F 5 HOH A 144 644 90 HOH HOH . F 5 HOH A 145 645 43 HOH HOH . F 5 HOH A 146 646 145 HOH HOH . F 5 HOH A 147 647 132 HOH HOH . F 5 HOH A 148 648 16 HOH HOH . F 5 HOH A 149 649 228 HOH HOH . F 5 HOH A 150 650 113 HOH HOH . F 5 HOH A 151 651 291 HOH HOH . F 5 HOH A 152 652 259 HOH HOH . F 5 HOH A 153 653 36 HOH HOH . F 5 HOH A 154 654 181 HOH HOH . F 5 HOH A 155 655 99 HOH HOH . F 5 HOH A 156 656 63 HOH HOH . F 5 HOH A 157 657 24 HOH HOH . F 5 HOH A 158 658 282 HOH HOH . F 5 HOH A 159 659 258 HOH HOH . F 5 HOH A 160 660 193 HOH HOH . F 5 HOH A 161 661 71 HOH HOH . F 5 HOH A 162 662 32 HOH HOH . F 5 HOH A 163 663 121 HOH HOH . F 5 HOH A 164 664 45 HOH HOH . F 5 HOH A 165 665 52 HOH HOH . F 5 HOH A 166 666 173 HOH HOH . F 5 HOH A 167 667 226 HOH HOH . F 5 HOH A 168 668 242 HOH HOH . F 5 HOH A 169 669 66 HOH HOH . F 5 HOH A 170 670 66 HOH HOH . F 5 HOH A 171 671 162 HOH HOH . F 5 HOH A 172 672 313 HOH HOH . F 5 HOH A 173 673 221 HOH HOH . F 5 HOH A 174 674 25 HOH HOH . F 5 HOH A 175 675 161 HOH HOH . F 5 HOH A 176 676 219 HOH HOH . F 5 HOH A 177 677 119 HOH HOH . F 5 HOH A 178 678 134 HOH HOH . F 5 HOH A 179 679 28 HOH HOH . F 5 HOH A 180 680 325 HOH HOH . F 5 HOH A 181 681 54 HOH HOH . F 5 HOH A 182 682 119 HOH HOH . F 5 HOH A 183 683 204 HOH HOH . F 5 HOH A 184 684 137 HOH HOH . F 5 HOH A 185 685 108 HOH HOH . F 5 HOH A 186 686 135 HOH HOH . F 5 HOH A 187 687 166 HOH HOH . F 5 HOH A 188 688 63 HOH HOH . F 5 HOH A 189 689 70 HOH HOH . F 5 HOH A 190 690 153 HOH HOH . F 5 HOH A 191 691 64 HOH HOH . F 5 HOH A 192 692 7 HOH HOH . F 5 HOH A 193 693 182 HOH HOH . F 5 HOH A 194 694 15 HOH HOH . F 5 HOH A 195 695 186 HOH HOH . F 5 HOH A 196 696 306 HOH HOH . F 5 HOH A 197 697 114 HOH HOH . F 5 HOH A 198 698 189 HOH HOH . F 5 HOH A 199 699 27 HOH HOH . F 5 HOH A 200 700 85 HOH HOH . F 5 HOH A 201 701 88 HOH HOH . F 5 HOH A 202 702 116 HOH HOH . F 5 HOH A 203 703 101 HOH HOH . F 5 HOH A 204 704 188 HOH HOH . F 5 HOH A 205 705 117 HOH HOH . F 5 HOH A 206 706 49 HOH HOH . F 5 HOH A 207 707 235 HOH HOH . F 5 HOH A 208 708 298 HOH HOH . F 5 HOH A 209 709 100 HOH HOH . F 5 HOH A 210 710 149 HOH HOH . F 5 HOH A 211 711 60 HOH HOH . F 5 HOH A 212 712 322 HOH HOH . F 5 HOH A 213 713 147 HOH HOH . F 5 HOH A 214 714 131 HOH HOH . F 5 HOH A 215 715 132 HOH HOH . F 5 HOH A 216 716 50 HOH HOH . F 5 HOH A 217 717 299 HOH HOH . F 5 HOH A 218 718 198 HOH HOH . F 5 HOH A 219 719 18 HOH HOH . F 5 HOH A 220 720 256 HOH HOH . F 5 HOH A 221 721 324 HOH HOH . F 5 HOH A 222 722 229 HOH HOH . F 5 HOH A 223 723 93 HOH HOH . F 5 HOH A 224 724 254 HOH HOH . F 5 HOH A 225 725 196 HOH HOH . F 5 HOH A 226 726 328 HOH HOH . F 5 HOH A 227 727 203 HOH HOH . F 5 HOH A 228 728 197 HOH HOH . F 5 HOH A 229 729 288 HOH HOH . F 5 HOH A 230 730 206 HOH HOH . F 5 HOH A 231 731 204 HOH HOH . F 5 HOH A 232 732 252 HOH HOH . F 5 HOH A 233 733 165 HOH HOH . F 5 HOH A 234 734 179 HOH HOH . F 5 HOH A 235 735 251 HOH HOH . F 5 HOH A 236 736 198 HOH HOH . F 5 HOH A 237 737 222 HOH HOH . F 5 HOH A 238 738 201 HOH HOH . F 5 HOH A 239 739 265 HOH HOH . F 5 HOH A 240 740 220 HOH HOH . F 5 HOH A 241 741 112 HOH HOH . F 5 HOH A 242 742 53 HOH HOH . F 5 HOH A 243 743 199 HOH HOH . F 5 HOH A 244 744 171 HOH HOH . F 5 HOH A 245 745 206 HOH HOH . G 5 HOH B 1 701 39 HOH HOH . G 5 HOH B 2 702 327 HOH HOH . G 5 HOH B 3 703 148 HOH HOH . G 5 HOH B 4 704 129 HOH HOH . G 5 HOH B 5 705 62 HOH HOH . G 5 HOH B 6 706 151 HOH HOH . G 5 HOH B 7 707 144 HOH HOH . G 5 HOH B 8 708 94 HOH HOH . G 5 HOH B 9 709 197 HOH HOH . G 5 HOH B 10 710 175 HOH HOH . G 5 HOH B 11 711 47 HOH HOH . G 5 HOH B 12 712 48 HOH HOH . G 5 HOH B 13 713 318 HOH HOH . G 5 HOH B 14 714 42 HOH HOH . G 5 HOH B 15 715 72 HOH HOH . G 5 HOH B 16 716 143 HOH HOH . G 5 HOH B 17 717 172 HOH HOH . G 5 HOH B 18 718 57 HOH HOH . G 5 HOH B 19 719 96 HOH HOH . G 5 HOH B 20 720 123 HOH HOH . G 5 HOH B 21 721 126 HOH HOH . G 5 HOH B 22 722 82 HOH HOH . G 5 HOH B 23 723 167 HOH HOH . G 5 HOH B 24 724 14 HOH HOH . G 5 HOH B 25 725 194 HOH HOH . G 5 HOH B 26 726 65 HOH HOH . G 5 HOH B 27 727 53 HOH HOH . G 5 HOH B 28 728 176 HOH HOH . G 5 HOH B 29 729 29 HOH HOH . G 5 HOH B 30 730 131 HOH HOH . G 5 HOH B 31 731 212 HOH HOH . G 5 HOH B 32 732 11 HOH HOH . G 5 HOH B 33 733 87 HOH HOH . G 5 HOH B 34 734 118 HOH HOH . G 5 HOH B 35 735 128 HOH HOH . G 5 HOH B 36 736 148 HOH HOH . G 5 HOH B 37 737 115 HOH HOH . G 5 HOH B 38 738 133 HOH HOH . G 5 HOH B 39 739 6 HOH HOH . G 5 HOH B 40 740 9 HOH HOH . G 5 HOH B 41 741 77 HOH HOH . G 5 HOH B 42 742 54 HOH HOH . G 5 HOH B 43 743 192 HOH HOH . G 5 HOH B 44 744 195 HOH HOH . G 5 HOH B 45 745 49 HOH HOH . G 5 HOH B 46 746 172 HOH HOH . G 5 HOH B 47 747 8 HOH HOH . G 5 HOH B 48 748 23 HOH HOH . G 5 HOH B 49 749 107 HOH HOH . G 5 HOH B 50 750 116 HOH HOH . G 5 HOH B 51 751 224 HOH HOH . G 5 HOH B 52 752 98 HOH HOH . G 5 HOH B 53 753 217 HOH HOH . G 5 HOH B 54 754 69 HOH HOH . G 5 HOH B 55 755 170 HOH HOH . G 5 HOH B 56 756 225 HOH HOH . G 5 HOH B 57 757 38 HOH HOH . G 5 HOH B 58 758 26 HOH HOH . G 5 HOH B 59 759 174 HOH HOH . G 5 HOH B 60 760 199 HOH HOH . G 5 HOH B 61 761 98 HOH HOH . G 5 HOH B 62 762 160 HOH HOH . G 5 HOH B 63 763 29 HOH HOH . G 5 HOH B 64 764 127 HOH HOH . G 5 HOH B 65 765 156 HOH HOH . G 5 HOH B 66 766 64 HOH HOH . G 5 HOH B 67 767 61 HOH HOH . G 5 HOH B 68 768 103 HOH HOH . G 5 HOH B 69 769 41 HOH HOH . G 5 HOH B 70 770 87 HOH HOH . G 5 HOH B 71 771 160 HOH HOH . G 5 HOH B 72 772 120 HOH HOH . G 5 HOH B 73 773 311 HOH HOH . G 5 HOH B 74 774 167 HOH HOH . G 5 HOH B 75 775 138 HOH HOH . G 5 HOH B 76 776 20 HOH HOH . G 5 HOH B 77 777 127 HOH HOH . G 5 HOH B 78 778 205 HOH HOH . G 5 HOH B 79 779 190 HOH HOH . G 5 HOH B 80 780 135 HOH HOH . G 5 HOH B 81 781 211 HOH HOH . G 5 HOH B 82 782 83 HOH HOH . G 5 HOH B 83 783 115 HOH HOH . G 5 HOH B 84 784 129 HOH HOH . G 5 HOH B 85 785 69 HOH HOH . G 5 HOH B 86 786 30 HOH HOH . G 5 HOH B 87 787 13 HOH HOH . G 5 HOH B 88 788 62 HOH HOH . G 5 HOH B 89 789 67 HOH HOH . G 5 HOH B 90 790 88 HOH HOH . G 5 HOH B 91 791 175 HOH HOH . G 5 HOH B 92 792 99 HOH HOH . G 5 HOH B 93 793 170 HOH HOH . G 5 HOH B 94 794 149 HOH HOH . G 5 HOH B 95 795 166 HOH HOH . G 5 HOH B 96 796 84 HOH HOH . G 5 HOH B 97 797 122 HOH HOH . G 5 HOH B 98 798 124 HOH HOH . G 5 HOH B 99 799 190 HOH HOH . G 5 HOH B 100 800 180 HOH HOH . G 5 HOH B 101 801 209 HOH HOH . G 5 HOH B 102 802 105 HOH HOH . G 5 HOH B 103 803 59 HOH HOH . G 5 HOH B 104 804 51 HOH HOH . G 5 HOH B 105 805 31 HOH HOH . G 5 HOH B 106 806 65 HOH HOH . G 5 HOH B 107 807 194 HOH HOH . G 5 HOH B 108 808 111 HOH HOH . G 5 HOH B 109 809 269 HOH HOH . G 5 HOH B 110 810 165 HOH HOH . G 5 HOH B 111 811 208 HOH HOH . G 5 HOH B 112 812 233 HOH HOH . G 5 HOH B 113 813 72 HOH HOH . G 5 HOH B 114 814 2 HOH HOH . G 5 HOH B 115 815 138 HOH HOH . G 5 HOH B 116 816 12 HOH HOH . G 5 HOH B 117 817 95 HOH HOH . G 5 HOH B 118 818 114 HOH HOH . G 5 HOH B 119 819 140 HOH HOH . G 5 HOH B 120 820 180 HOH HOH . G 5 HOH B 121 821 146 HOH HOH . G 5 HOH B 122 822 159 HOH HOH . G 5 HOH B 123 823 185 HOH HOH . G 5 HOH B 124 824 75 HOH HOH . G 5 HOH B 125 825 200 HOH HOH . G 5 HOH B 126 826 93 HOH HOH . G 5 HOH B 127 827 76 HOH HOH . G 5 HOH B 128 828 50 HOH HOH . G 5 HOH B 129 829 80 HOH HOH . G 5 HOH B 130 830 280 HOH HOH . G 5 HOH B 131 831 150 HOH HOH . G 5 HOH B 132 832 152 HOH HOH . G 5 HOH B 133 833 89 HOH HOH . G 5 HOH B 134 834 46 HOH HOH . G 5 HOH B 135 835 34 HOH HOH . G 5 HOH B 136 836 142 HOH HOH . G 5 HOH B 137 837 83 HOH HOH . G 5 HOH B 138 838 44 HOH HOH . G 5 HOH B 139 839 43 HOH HOH . G 5 HOH B 140 840 92 HOH HOH . G 5 HOH B 141 841 27 HOH HOH . G 5 HOH B 142 842 78 HOH HOH . G 5 HOH B 143 843 182 HOH HOH . G 5 HOH B 144 844 38 HOH HOH . G 5 HOH B 145 845 2 HOH HOH . G 5 HOH B 146 846 110 HOH HOH . G 5 HOH B 147 847 268 HOH HOH . G 5 HOH B 148 848 227 HOH HOH . G 5 HOH B 149 849 86 HOH HOH . G 5 HOH B 150 850 218 HOH HOH . G 5 HOH B 151 851 90 HOH HOH . G 5 HOH B 152 852 275 HOH HOH . G 5 HOH B 153 853 103 HOH HOH . G 5 HOH B 154 854 162 HOH HOH . G 5 HOH B 155 855 81 HOH HOH . G 5 HOH B 156 856 134 HOH HOH . G 5 HOH B 157 857 123 HOH HOH . G 5 HOH B 158 858 184 HOH HOH . G 5 HOH B 159 859 168 HOH HOH . G 5 HOH B 160 860 287 HOH HOH . G 5 HOH B 161 861 79 HOH HOH . G 5 HOH B 162 862 168 HOH HOH . G 5 HOH B 163 863 56 HOH HOH . G 5 HOH B 164 864 205 HOH HOH . G 5 HOH B 165 865 238 HOH HOH . G 5 HOH B 166 866 237 HOH HOH . G 5 HOH B 167 867 133 HOH HOH . G 5 HOH B 168 868 292 HOH HOH . G 5 HOH B 169 869 189 HOH HOH . G 5 HOH B 170 870 266 HOH HOH . G 5 HOH B 171 871 200 HOH HOH . G 5 HOH B 172 872 70 HOH HOH . G 5 HOH B 173 873 112 HOH HOH . G 5 HOH B 174 874 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UDP . . . C 3 93.941 79.686 19.274 1 19.93 ? N1 UDP 401 A 1 HETATM 2 C C2 UDP . . . C 3 92.572 79.702 19.605 1 22.65 ? C2 UDP 401 A 1 HETATM 3 N N3 UDP . . . C 3 92.076 80.791 20.194 1 19.54 ? N3 UDP 401 A 1 HETATM 4 C C4 UDP . . . C 3 92.818 81.835 20.505 1 21.88 ? C4 UDP 401 A 1 HETATM 5 C C5 UDP . . . C 3 94.209 81.851 20.204 1 19.69 ? C5 UDP 401 A 1 HETATM 6 C C6 UDP . . . C 3 94.74 80.726 19.579 1 19.68 ? C6 UDP 401 A 1 HETATM 7 O O2 UDP . . . C 3 91.854 78.716 19.299 1 21.53 ? O2 UDP 401 A 1 HETATM 8 O O4 UDP . . . C 3 92.325 82.837 21.056 1 21.49 ? O4 UDP 401 A 1 HETATM 9 C C1' UDP . . . C 3 94.488 78.498 18.588 1 19.72 ? C1' UDP 401 A 1 HETATM 10 C C2' UDP . . . C 3 94.7 78.668 17.121 1 19.96 ? C2' UDP 401 A 1 HETATM 11 O O2' UDP . . . C 3 93.524 78.425 16.332 1 21.82 ? O2' UDP 401 A 1 HETATM 12 C C3' UDP . . . C 3 95.84 77.678 16.759 1 20.2 ? C3' UDP 401 A 1 HETATM 13 C C4' UDP . . . C 3 96.469 77.413 18.12 1 20.36 ? C4' UDP 401 A 1 HETATM 14 O O4' UDP . . . C 3 95.804 78.256 19.066 1 18.68 ? O4' UDP 401 A 1 HETATM 15 O O3' UDP . . . C 3 95.328 76.46 16.267 1 20.32 ? O3' UDP 401 A 1 HETATM 16 C C5' UDP . . . C 3 97.979 77.738 18.143 1 19.6 ? C5' UDP 401 A 1 HETATM 17 O O5' UDP . . . C 3 98.512 76.747 17.235 1 21.21 ? O5' UDP 401 A 1 HETATM 18 P PA UDP . . . C 3 99.845 76.958 16.32 1 20.78 ? PA UDP 401 A 1 HETATM 19 O O1A UDP . . . C 3 99.941 75.779 15.372 1 19.45 ? O1A UDP 401 A 1 HETATM 20 O O2A UDP . . . C 3 99.82 78.34 15.704 1 20.72 ? O2A UDP 401 A 1 HETATM 21 O O3A UDP . . . C 3 101.017 76.95 17.459 1 19.68 ? O3A UDP 401 A 1 HETATM 22 P PB UDP . . . C 3 101.399 75.877 18.644 1 21.4 ? PB UDP 401 A 1 HETATM 23 O O1B UDP . . . C 3 100.975 74.532 18.223 1 19.89 ? O1B UDP 401 A 1 HETATM 24 O O2B UDP . . . C 3 100.627 76.37 19.835 1 21.27 ? O2B UDP 401 A 1 HETATM 25 O O3B UDP . . . C 3 102.909 76.028 18.752 1 22.83 ? O3B UDP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #