data_5ZG6
#
_model_server_result.job_id            -zBr0F7Ub-69PzZOOnhsuw 
_model_server_result.datetime_utc      '2024-10-11 15:28:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zg6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5ZG6 
#
_exptl.entry_id    5ZG6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.418 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-METHYL-2-[2-OXO-1-(2-THIOPHEN-2-YL-ACETYLAMINO)-ETHYL]-3,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         77.43 
_cell.angle_beta          75.53 
_cell.angle_gamma         69.34 
_cell.entry_id            5ZG6 
_cell.length_a            43.292 
_cell.length_b            46.459 
_cell.length_c            65.981 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZG6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 47 B SER 70 1_555 C C8 CED . B CED 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? 
covale ? covale2 B OG SER 47 A SER 70 1_555 D C8 CED . A CED 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? 
#
_chem_comp.formula           'C14 H16 N2 O4 S2' 
_chem_comp.formula_weight    340.418 
_chem_comp.id                CED 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-METHYL-2-[2-OXO-1-(2-THIOPHEN-2-YL-ACETYLAMINO)-ETHYL]-3,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DEGRADED CEPHALORIDINE, open form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C2 CED sing 70 n n 
S1 C6 CED sing 71 n n 
C2 C3 CED sing 72 n n 
C2 H21 CED sing 73 n n 
C2 H22 CED sing 74 n n 
C3 C3' CED sing 75 n n 
C3 C4 CED doub 76 n n 
C3' "H3'1" CED sing 77 n n 
C3' "H3'2" CED sing 78 n n 
C3' "H3'3" CED sing 79 n n 
C4 C4' CED sing 80 n n 
C4 N5 CED sing 81 n n 
C4' O4A CED doub 82 n n 
C4' O4B CED sing 83 n n 
O4B HO4 CED sing 84 n n 
N5 C6 CED sing 85 n n 
N5 HN5 CED sing 86 n n 
C6 C7 CED sing 87 n n 
C6 H6 CED sing 88 n n 
C7 C8 CED sing 89 n n 
C7 N10 CED sing 90 n n 
C7 H7 CED sing 91 n n 
C8 O9 CED doub 92 n n 
C8 H8 CED sing 93 n n 
N10 C11 CED sing 94 n n 
N10 HN1 CED sing 95 n n 
C11 O12 CED doub 96 n n 
C11 C13 CED sing 97 n n 
C13 C14 CED sing 98 n n 
C13 H131 CED sing 99 n n 
C13 H132 CED sing 100 n n 
C14 C15 CED doub 101 n y 
C14 S19 CED sing 102 n y 
C15 C16 CED sing 103 n y 
C15 H15 CED sing 104 n n 
C16 C17 CED doub 105 n y 
C16 H16 CED sing 106 n n 
C17 S19 CED sing 107 n y 
C17 H17 CED sing 108 n n 
#
_atom_sites.entry_id                     5ZG6 
_atom_sites.fract_transf_matrix[1][1]    0.023099 
_atom_sites.fract_transf_matrix[1][2]    -0.008709 
_atom_sites.fract_transf_matrix[1][3]    -0.004764 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023004 
_atom_sites.fract_transf_matrix[2][3]    -0.003322 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015815 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CED B 1 301 1 CED CED . 
D 2 CED A 1 301 1 CED CED . 
E 3 HOH B 1 401 103 HOH HOH . 
E 3 HOH B 2 402 78 HOH HOH . 
E 3 HOH B 3 403 46 HOH HOH . 
E 3 HOH B 4 404 3 HOH HOH . 
E 3 HOH B 5 405 20 HOH HOH . 
E 3 HOH B 6 406 40 HOH HOH . 
E 3 HOH B 7 407 37 HOH HOH . 
E 3 HOH B 8 408 92 HOH HOH . 
E 3 HOH B 9 409 80 HOH HOH . 
E 3 HOH B 10 410 49 HOH HOH . 
E 3 HOH B 11 411 65 HOH HOH . 
E 3 HOH B 12 412 73 HOH HOH . 
E 3 HOH B 13 413 69 HOH HOH . 
E 3 HOH B 14 414 71 HOH HOH . 
E 3 HOH B 15 415 14 HOH HOH . 
E 3 HOH B 16 416 36 HOH HOH . 
E 3 HOH B 17 417 16 HOH HOH . 
E 3 HOH B 18 418 17 HOH HOH . 
E 3 HOH B 19 419 74 HOH HOH . 
E 3 HOH B 20 420 57 HOH HOH . 
E 3 HOH B 21 421 45 HOH HOH . 
E 3 HOH B 22 422 56 HOH HOH . 
E 3 HOH B 23 423 98 HOH HOH . 
E 3 HOH B 24 424 39 HOH HOH . 
E 3 HOH B 25 425 55 HOH HOH . 
E 3 HOH B 26 426 8 HOH HOH . 
E 3 HOH B 27 427 85 HOH HOH . 
E 3 HOH B 28 428 15 HOH HOH . 
E 3 HOH B 29 429 41 HOH HOH . 
E 3 HOH B 30 430 59 HOH HOH . 
E 3 HOH B 31 431 27 HOH HOH . 
E 3 HOH B 32 432 44 HOH HOH . 
E 3 HOH B 33 433 12 HOH HOH . 
E 3 HOH B 34 434 47 HOH HOH . 
E 3 HOH B 35 435 94 HOH HOH . 
E 3 HOH B 36 436 83 HOH HOH . 
E 3 HOH B 37 437 95 HOH HOH . 
E 3 HOH B 38 438 67 HOH HOH . 
E 3 HOH B 39 439 29 HOH HOH . 
E 3 HOH B 40 440 64 HOH HOH . 
E 3 HOH B 41 441 87 HOH HOH . 
E 3 HOH B 42 442 99 HOH HOH . 
E 3 HOH B 43 443 96 HOH HOH . 
E 3 HOH B 44 444 106 HOH HOH . 
E 3 HOH B 45 445 21 HOH HOH . 
E 3 HOH B 46 446 101 HOH HOH . 
E 3 HOH B 47 447 84 HOH HOH . 
E 3 HOH B 48 448 97 HOH HOH . 
E 3 HOH B 49 449 70 HOH HOH . 
E 3 HOH B 50 450 102 HOH HOH . 
F 3 HOH A 1 401 104 HOH HOH . 
F 3 HOH A 2 402 77 HOH HOH . 
F 3 HOH A 3 403 79 HOH HOH . 
F 3 HOH A 4 404 4 HOH HOH . 
F 3 HOH A 5 405 91 HOH HOH . 
F 3 HOH A 6 406 25 HOH HOH . 
F 3 HOH A 7 407 68 HOH HOH . 
F 3 HOH A 8 408 62 HOH HOH . 
F 3 HOH A 9 409 7 HOH HOH . 
F 3 HOH A 10 410 60 HOH HOH . 
F 3 HOH A 11 411 31 HOH HOH . 
F 3 HOH A 12 412 72 HOH HOH . 
F 3 HOH A 13 413 28 HOH HOH . 
F 3 HOH A 14 414 43 HOH HOH . 
F 3 HOH A 15 415 42 HOH HOH . 
F 3 HOH A 16 416 26 HOH HOH . 
F 3 HOH A 17 417 1 HOH HOH . 
F 3 HOH A 18 418 76 HOH HOH . 
F 3 HOH A 19 419 66 HOH HOH . 
F 3 HOH A 20 420 61 HOH HOH . 
F 3 HOH A 21 421 58 HOH HOH . 
F 3 HOH A 22 422 10 HOH HOH . 
F 3 HOH A 23 423 33 HOH HOH . 
F 3 HOH A 24 424 53 HOH HOH . 
F 3 HOH A 25 425 19 HOH HOH . 
F 3 HOH A 26 426 32 HOH HOH . 
F 3 HOH A 27 427 35 HOH HOH . 
F 3 HOH A 28 428 89 HOH HOH . 
F 3 HOH A 29 429 81 HOH HOH . 
F 3 HOH A 30 430 5 HOH HOH . 
F 3 HOH A 31 431 52 HOH HOH . 
F 3 HOH A 32 432 22 HOH HOH . 
F 3 HOH A 33 433 93 HOH HOH . 
F 3 HOH A 34 434 30 HOH HOH . 
F 3 HOH A 35 435 54 HOH HOH . 
F 3 HOH A 36 436 2 HOH HOH . 
F 3 HOH A 37 437 51 HOH HOH . 
F 3 HOH A 38 438 34 HOH HOH . 
F 3 HOH A 39 439 11 HOH HOH . 
F 3 HOH A 40 440 23 HOH HOH . 
F 3 HOH A 41 441 50 HOH HOH . 
F 3 HOH A 42 442 63 HOH HOH . 
F 3 HOH A 43 443 90 HOH HOH . 
F 3 HOH A 44 444 75 HOH HOH . 
F 3 HOH A 45 445 100 HOH HOH . 
F 3 HOH A 46 446 6 HOH HOH . 
F 3 HOH A 47 447 13 HOH HOH . 
F 3 HOH A 48 448 9 HOH HOH . 
F 3 HOH A 49 449 24 HOH HOH . 
F 3 HOH A 50 450 82 HOH HOH . 
F 3 HOH A 51 451 86 HOH HOH . 
F 3 HOH A 52 452 88 HOH HOH . 
F 3 HOH A 53 453 105 HOH HOH . 
F 3 HOH A 54 454 18 HOH HOH . 
F 3 HOH A 55 455 48 HOH HOH . 
F 3 HOH A 56 456 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 CED . . . C 2 6.092 -8.135 6.68 1 18.03 ? S1 CED 301 B 1 
HETATM 2 C C2 CED . . . C 2 7.709 -7.421 6.305 1 19.65 ? C2 CED 301 B 1 
HETATM 3 C C3 CED . . . C 2 7.675 -5.921 6.306 1 19.68 ? C3 CED 301 B 1 
HETATM 4 C C3' CED . . . C 2 8.866 -5.312 6.994 1 20.97 ? C3' CED 301 B 1 
HETATM 5 C C4 CED . . . C 2 6.629 -5.233 5.787 1 19.44 ? C4 CED 301 B 1 
HETATM 6 C C4' CED . . . C 2 6.587 -3.726 5.533 1 20.12 ? C4' CED 301 B 1 
HETATM 7 O O4A CED . . . C 2 5.596 -3.285 4.974 1 18.18 ? O4A CED 301 B 1 
HETATM 8 O O4B CED . . . C 2 7.542 -3.105 5.886 1 22.57 ? O4B CED 301 B 1 
HETATM 9 N N5 CED . . . C 2 5.453 -5.83 5.431 1 18.71 ? N5 CED 301 B 1 
HETATM 10 C C6 CED . . . C 2 5.082 -7.242 5.472 1 18.7 ? C6 CED 301 B 1 
HETATM 11 C C7 CED . . . C 2 5.13 -7.835 4.041 1 19.25 ? C7 CED 301 B 1 
HETATM 12 C C8 CED . . . C 2 4.788 -6.835 2.926 1 17.93 ? C8 CED 301 B 1 
HETATM 13 O O9 CED . . . C 2 5.584 -6.125 2.426 1 17.97 ? O9 CED 301 B 1 
HETATM 14 N N10 CED . . . C 2 6.396 -8.463 3.716 1 19.95 ? N10 CED 301 B 1 
HETATM 15 C C11 CED . . . C 2 6.573 -9.772 3.869 1 21.62 ? C11 CED 301 B 1 
HETATM 16 O O12 CED . . . C 2 5.759 -10.486 4.457 1 19.89 ? O12 CED 301 B 1 
HETATM 17 C C13 CED . . . C 2 7.868 -10.323 3.308 1 23.64 ? C13 CED 301 B 1 
HETATM 18 C C14 CED . . . C 2 8.991 -10.338 4.302 1 26.6 ? C14 CED 301 B 1 
HETATM 19 C C15 CED . . . C 2 8.998 -10.967 5.543 1 24.67 ? C15 CED 301 B 1 
HETATM 20 C C16 CED . . . C 2 10.187 -10.666 6.258 1 27.35 ? C16 CED 301 B 1 
HETATM 21 C C17 CED . . . C 2 11.053 -9.909 5.555 1 29.21 ? C17 CED 301 B 1 
HETATM 22 S S19 CED . . . C 2 10.467 -9.54 4.003 1 34.18 ? S19 CED 301 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
#