data_5ZGB # _model_server_result.job_id D1zOXgMJkC2RXiw3xBy9Ig _model_server_result.datetime_utc '2025-02-27 09:23:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"ND","auth_seq_id":101}' # _entry.id 5ZGB # _exptl.entry_id 5ZGB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 351.64 _entity.id 21 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZGB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptadecameric _pdbx_struct_assembly.oligomeric_count 17 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE,QE,RE,SE,TE,UE,VE,WE,XE,YE,ZE,AF,BF,CF,DF,EF,FF,GF,HF,IF,JF,KF,LF,MF,NF,OF,PF,QF,RF,SF,TF,UF,VF,WF,XF,YF,ZF,AG,BG,CG,DG,EG,FG,GG,HG,IG,JG,KG,LG,MG,NG,OG,PG,QG,RG,SG,TG,UG,VG,WG,XG,YG,ZG,AH,BH,CH,DH,EH,FH,GH,HH,IH,JH,KH,LH,MH,NH,OH,PH,QH,RH,SH,TH,UH,VH,WH,XH _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 21 LB N N ? 21 ND N N ? 21 OD N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 34 F CYS 34 1_555 F SG CYS 87 F CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 NB C1 BGC . A BGC 849 1_555 PG O2S 1DO . 3 1DO 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale2 D O ASP 99 D ASP 99 1_555 D N VAL 101 D VAL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? metalc ? metalc1 A OE1 GLN 112 A GLN 112 1_555 W MG CLA . A CLA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc2 A OE1 GLN 120 A GLN 120 1_555 X MG CLA . A CLA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc3 C N CYS 51 C CYS 51 1_555 ND FE1 SF4 . C SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc4 J OE2 GLU 49 L GLU 49 1_555 FE MG CLA . L CLA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 1169 n n FE1 S3 SF4 sing 1170 n n FE1 S4 SF4 sing 1171 n n FE2 S1 SF4 sing 1172 n n FE2 S3 SF4 sing 1173 n n FE2 S4 SF4 sing 1174 n n FE3 S1 SF4 sing 1175 n n FE3 S2 SF4 sing 1176 n n FE3 S4 SF4 sing 1177 n n FE4 S1 SF4 sing 1178 n n FE4 S2 SF4 sing 1179 n n FE4 S3 SF4 sing 1180 n n # _atom_sites.entry_id 5ZGB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code R 16 CL0 A 1 801 801 CL0 CL0 . S 17 CLA A 1 802 805 CLA CLA . T 17 CLA A 1 803 806 CLA CLA . U 17 CLA A 1 804 807 CLA CLA . V 17 CLA A 1 805 808 CLA CLA . W 17 CLA A 1 806 809 CLA CLA . X 17 CLA A 1 807 810 CLA CLA . Y 17 CLA A 1 808 811 CLA CLA . Z 17 CLA A 1 809 812 CLA CLA . AA 17 CLA A 1 810 813 CLA CLA . BA 17 CLA A 1 811 814 CLA CLA . CA 17 CLA A 1 812 815 CLA CLA . DA 17 CLA A 1 813 816 CLA CLA . EA 17 CLA A 1 814 817 CLA CLA . FA 17 CLA A 1 815 818 CLA CLA . GA 17 CLA A 1 816 819 CLA CLA . HA 17 CLA A 1 817 820 CLA CLA . IA 17 CLA A 1 818 821 CLA CLA . JA 17 CLA A 1 819 822 CLA CLA . KA 17 CLA A 1 820 823 CLA CLA . LA 17 CLA A 1 821 824 CLA CLA . MA 17 CLA A 1 822 825 CLA CLA . NA 17 CLA A 1 823 826 CLA CLA . OA 17 CLA A 1 824 827 CLA CLA . PA 17 CLA A 1 825 828 CLA CLA . QA 17 CLA A 1 826 829 CLA CLA . RA 17 CLA A 1 827 830 CLA CLA . SA 17 CLA A 1 828 831 CLA CLA . TA 17 CLA A 1 829 832 CLA CLA . UA 17 CLA A 1 830 833 CLA CLA . VA 17 CLA A 1 831 834 CLA CLA . WA 17 CLA A 1 832 835 CLA CLA . XA 17 CLA A 1 833 836 CLA CLA . YA 17 CLA A 1 834 837 CLA CLA . ZA 17 CLA A 1 835 838 CLA CLA . AB 17 CLA A 1 836 839 CLA CLA . BB 17 CLA A 1 837 840 CLA CLA . CB 17 CLA A 1 838 842 CLA CLA . DB 17 CLA A 1 839 843 CLA CLA . EB 18 PQN A 1 840 844 PQN PQN . FB 19 LHG A 1 841 846 LHG LHG . GB 19 LHG A 1 842 847 LHG LHG . HB 20 BCR A 1 843 848 BCR BCR . IB 20 BCR A 1 844 849 BCR BCR . JB 20 BCR A 1 845 851 BCR BCR . KB 20 BCR A 1 846 852 BCR BCR . LB 21 SF4 A 1 847 853 SF4 SF4 . MB 17 CLA A 1 848 803 CLA CLA . NB 22 BGC A 1 849 855 BGC UNL . OB 17 CLA B 1 801 802 CLA CLA . PB 17 CLA B 1 802 803 CLA CLA . QB 17 CLA B 1 803 841 CLA CLA . RB 17 CLA B 1 804 854 CLA CLA . SB 20 BCR B 1 805 801 BCR BCR . TB 17 CLA B 1 806 802 CLA CLA . UB 17 CLA B 1 807 804 CLA CLA . VB 17 CLA B 1 808 805 CLA CLA . WB 17 CLA B 1 809 806 CLA CLA . XB 17 CLA B 1 810 807 CLA CLA . YB 17 CLA B 1 811 808 CLA CLA . ZB 17 CLA B 1 812 809 CLA CLA . AC 17 CLA B 1 813 810 CLA CLA . BC 17 CLA B 1 814 811 CLA CLA . CC 17 CLA B 1 815 812 CLA CLA . DC 17 CLA B 1 816 813 CLA CLA . EC 17 CLA B 1 817 814 CLA CLA . FC 17 CLA B 1 818 815 CLA CLA . GC 17 CLA B 1 819 816 CLA CLA . HC 17 CLA B 1 820 817 CLA CLA . IC 17 CLA B 1 821 818 CLA CLA . JC 17 CLA B 1 822 819 CLA CLA . KC 17 CLA B 1 823 820 CLA CLA . LC 17 CLA B 1 824 821 CLA CLA . MC 17 CLA B 1 825 822 CLA CLA . NC 17 CLA B 1 826 823 CLA CLA . OC 17 CLA B 1 827 824 CLA CLA . PC 17 CLA B 1 828 825 CLA CLA . QC 17 CLA B 1 829 826 CLA CLA . RC 17 CLA B 1 830 827 CLA CLA . SC 17 CLA B 1 831 828 CLA CLA . TC 17 CLA B 1 832 829 CLA CLA . UC 17 CLA B 1 833 830 CLA CLA . VC 17 CLA B 1 834 831 CLA CLA . WC 17 CLA B 1 835 832 CLA CLA . XC 17 CLA B 1 836 834 CLA CLA . YC 17 CLA B 1 837 835 CLA CLA . ZC 17 CLA B 1 838 836 CLA CLA . AD 17 CLA B 1 839 837 CLA CLA . BD 17 CLA B 1 840 838 CLA CLA . CD 17 CLA B 1 841 839 CLA CLA . DD 17 CLA B 1 842 840 CLA CLA . ED 17 CLA B 1 843 841 CLA CLA . FD 18 PQN B 1 844 842 PQN PQN . GD 20 BCR B 1 845 843 BCR BCR . HD 20 BCR B 1 846 844 BCR BCR . ID 20 BCR B 1 847 845 BCR BCR . JD 20 BCR B 1 848 846 BCR BCR . KD 20 BCR B 1 849 847 BCR BCR . LD 20 BCR B 1 850 848 BCR BCR . MD 23 DGD B 1 851 850 DGD DGD . ND 21 SF4 C 1 101 101 SF4 SF4 . OD 21 SF4 C 1 102 102 SF4 SF4 . PD 17 CLA F 1 301 301 CLA CLA . QD 17 CLA F 1 302 303 CLA CLA . RD 17 CLA F 1 303 304 CLA CLA . SD 20 BCR F 1 304 305 BCR BCR . TD 20 BCR I 1 101 101 BCR BCR . UD 17 CLA J 1 101 804 CLA CLA . VD 17 CLA J 1 102 833 CLA CLA . WD 17 CLA J 1 103 3002 CLA CLA . XD 20 BCR J 1 104 3003 BCR BCR . YD 20 BCR J 1 105 3004 BCR BCR . ZD 24 3XQ J 1 106 3005 3XQ UNL . AE 20 BCR K 1 101 856 BCR BCR . BE 17 CLA K 1 102 4002 CLA CLA . CE 17 CLA K 1 103 4003 CLA CLA . DE 20 BCR K 1 104 4004 BCR BCR . EE 20 BCR L 1 201 201 BCR BCR . FE 17 CLA L 1 202 202 CLA CLA . GE 17 CLA L 1 203 203 CLA CLA . HE 17 CLA L 1 204 204 CLA CLA . IE 20 BCR L 1 205 205 BCR BCR . JE 20 BCR L 1 206 206 BCR BCR . KE 17 CLA O 1 201 845 CLA CLA . LE 20 BCR O 1 202 850 BCR BCR . ME 17 CLA O 1 203 201 CLA CLA . NE 17 CLA O 1 204 202 CLA CLA . OE 17 CLA O 1 205 203 CLA CLA . PE 17 CLA 1 1 601 601 CLA CLA . QE 17 CLA 1 1 602 602 CLA CLA . RE 17 CLA 1 1 603 603 CLA CLA . SE 17 CLA 1 1 604 604 CLA CLA . TE 17 CLA 1 1 605 606 CLA CLA . UE 17 CLA 1 1 606 607 CLA CLA . VE 17 CLA 1 1 607 609 CLA CLA . WE 17 CLA 1 1 608 610 CLA CLA . XE 17 CLA 1 1 609 611 CLA CLA . YE 17 CLA 1 1 610 612 CLA CLA . ZE 17 CLA 1 1 611 613 CLA CLA . AF 17 CLA 1 1 612 615 CLA CLA . BF 25 ZEX 1 1 613 620 ZEX ZEX . CF 25 ZEX 1 1 614 621 ZEX ZEX . DF 25 ZEX 1 1 615 622 ZEX ZEX . EF 25 ZEX 1 1 616 623 ZEX ZEX . FF 25 ZEX 1 1 617 624 ZEX ZEX . GF 17 CLA 2 1 601 601 CLA CLA . HF 17 CLA 2 1 602 602 CLA CLA . IF 17 CLA 2 1 603 603 CLA CLA . JF 17 CLA 2 1 604 604 CLA CLA . KF 17 CLA 2 1 605 606 CLA CLA . LF 17 CLA 2 1 606 607 CLA CLA . MF 17 CLA 2 1 607 609 CLA CLA . NF 17 CLA 2 1 608 610 CLA CLA . OF 17 CLA 2 1 609 611 CLA CLA . PF 17 CLA 2 1 610 612 CLA CLA . QF 17 CLA 2 1 611 613 CLA CLA . RF 17 CLA 2 1 612 615 CLA CLA . SF 17 CLA 2 1 613 616 CLA CLA . TF 25 ZEX 2 1 614 620 ZEX ZEX . UF 25 ZEX 2 1 615 621 ZEX ZEX . VF 25 ZEX 2 1 616 623 ZEX ZEX . WF 25 ZEX 2 1 617 624 ZEX ZEX . XF 25 ZEX 3 1 201 622 ZEX ZEX . YF 17 CLA 3 1 202 601 CLA CLA . ZF 17 CLA 3 1 203 602 CLA CLA . AG 17 CLA 3 1 204 603 CLA CLA . BG 17 CLA 3 1 205 604 CLA CLA . CG 17 CLA 3 1 206 606 CLA CLA . DG 17 CLA 3 1 207 607 CLA CLA . EG 17 CLA 3 1 208 609 CLA CLA . FG 17 CLA 3 1 209 610 CLA CLA . GG 17 CLA 3 1 210 611 CLA CLA . HG 17 CLA 3 1 211 612 CLA CLA . IG 17 CLA 3 1 212 613 CLA CLA . JG 17 CLA 3 1 213 615 CLA CLA . KG 25 ZEX 3 1 214 620 ZEX ZEX . LG 25 ZEX 3 1 215 621 ZEX ZEX . MG 25 ZEX 3 1 216 622 ZEX ZEX . NG 25 ZEX 3 1 217 623 ZEX ZEX . OG 25 ZEX 3 1 218 624 ZEX ZEX . PG 26 1DO 3 1 219 855 1DO UNL . QG 17 CLA 4 1 601 601 CLA CLA . RG 17 CLA 4 1 602 602 CLA CLA . SG 17 CLA 4 1 603 603 CLA CLA . TG 17 CLA 4 1 604 604 CLA CLA . UG 17 CLA 4 1 605 606 CLA CLA . VG 17 CLA 4 1 606 607 CLA CLA . WG 17 CLA 4 1 607 609 CLA CLA . XG 17 CLA 4 1 608 610 CLA CLA . YG 17 CLA 4 1 609 611 CLA CLA . ZG 17 CLA 4 1 610 612 CLA CLA . AH 17 CLA 4 1 611 613 CLA CLA . BH 25 ZEX 4 1 612 620 ZEX ZEX . CH 25 ZEX 4 1 613 621 ZEX ZEX . DH 25 ZEX 4 1 614 622 ZEX ZEX . EH 25 ZEX 4 1 615 623 ZEX ZEX . FH 25 ZEX 4 1 616 624 ZEX ZEX . GH 25 ZEX 4 1 617 623 ZEX ZEX . HH 17 CLA 5 1 601 601 CLA CLA . IH 17 CLA 5 1 602 602 CLA CLA . JH 17 CLA 5 1 603 603 CLA CLA . KH 17 CLA 5 1 604 604 CLA CLA . LH 17 CLA 5 1 605 606 CLA CLA . MH 17 CLA 5 1 606 607 CLA CLA . NH 17 CLA 5 1 607 609 CLA CLA . OH 17 CLA 5 1 608 610 CLA CLA . PH 17 CLA 5 1 609 611 CLA CLA . QH 17 CLA 5 1 610 612 CLA CLA . RH 17 CLA 5 1 611 613 CLA CLA . SH 17 CLA 5 1 612 615 CLA CLA . TH 17 CLA 5 1 613 616 CLA CLA . UH 25 ZEX 5 1 614 620 ZEX ZEX . VH 25 ZEX 5 1 615 621 ZEX ZEX . WH 25 ZEX 5 1 616 622 ZEX ZEX . XH 25 ZEX 5 1 617 624 ZEX ZEX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . ND 21 145.619 114.974 150.601 1 81.78 ? FE1 SF4 101 C 1 HETATM 2 FE FE2 SF4 . . . ND 21 143.545 113.596 152.34 1 81.78 ? FE2 SF4 101 C 1 HETATM 3 FE FE3 SF4 . . . ND 21 146.559 113.405 153.074 1 81.78 ? FE3 SF4 101 C 1 HETATM 4 FE FE4 SF4 . . . ND 21 145.446 111.896 150.601 1 81.78 ? FE4 SF4 101 C 1 HETATM 5 S S1 SF4 . . . ND 21 144.95 111.982 152.722 1 81.78 ? S1 SF4 101 C 1 HETATM 6 S S2 SF4 . . . ND 21 147.021 113.356 150.959 1 81.78 ? S2 SF4 101 C 1 HETATM 7 S S3 SF4 . . . ND 21 144.048 113.52 150.227 1 81.78 ? S3 SF4 101 C 1 HETATM 8 S S4 SF4 . . . ND 21 145.141 115.021 152.725 1 81.78 ? S4 SF4 101 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #