data_5ZGC
#
_model_server_result.job_id            buvxaPgZkUt3sPK1g16knQ 
_model_server_result.datetime_utc      '2024-10-18 08:32:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zgc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":401}' 
#
_entry.id    5ZGC 
#
_exptl.entry_id    5ZGC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZGC 
_cell.length_a            138.512 
_cell.length_b            138.512 
_cell.length_c            242.876 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZGC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
? dimeric 2 author_defined_assembly 5 
? dimeric 2 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,M,R,X 1 1 
B,H,N,S 2 1 
C,I,O,T,Y 3 1 
D,K,P,U 4 1 
E,J,Q,V 5 1 
F,L,W 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 136 A CYS 256 1_555 M ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc2 A SG CYS 139 A CYS 259 1_555 M ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc3 A SG CYS 160 A CYS 280 1_555 M ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc4 A SG CYS 163 A CYS 283 1_555 M ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc5 B SG CYS 136 B CYS 256 1_555 N ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc6 B SG CYS 139 B CYS 259 1_555 N ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc7 B SG CYS 160 B CYS 280 1_555 N ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc8 B SG CYS 163 B CYS 283 1_555 N ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc9 C SG CYS 136 C CYS 256 1_555 O ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc10 C SG CYS 139 C CYS 259 1_555 O ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc11 C SG CYS 160 C CYS 280 1_555 O ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc12 C SG CYS 163 C CYS 283 1_555 O ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc13 D SG CYS 136 D CYS 256 1_555 P ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc14 D SG CYS 139 D CYS 259 1_555 P ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc15 D SG CYS 160 D CYS 280 1_555 P ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc16 D SG CYS 163 D CYS 283 1_555 P ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc17 E SG CYS 136 E CYS 256 1_555 Q ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc18 E SG CYS 139 E CYS 259 1_555 Q ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc19 E SG CYS 160 E CYS 280 1_555 Q ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc20 E SG CYS 163 E CYS 283 1_555 Q ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
covale ? covale1 G C ALA 5 G ALA 15 1_555 G N KHB 6 G KHB 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 G C KHB 6 G KHB 16 1_555 G N ARG 7 G ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 H C ALA 5 H ALA 15 1_555 H N KHB 6 H KHB 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale4 H C KHB 6 H KHB 16 1_555 H N ARG 7 H ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale5 I C ALA 5 I ALA 15 1_555 I N KHB 6 I KHB 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 I C KHB 6 I KHB 16 1_555 I N ARG 7 I ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale7 J C ALA 5 J ALA 15 1_555 J N KHB 6 J KHB 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 J C KHB 6 J KHB 16 1_555 J N ARG 7 J ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 K C ALA 5 K ALA 15 1_555 K N KHB 6 K KHB 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale10 K C KHB 6 K KHB 16 1_555 K N ARG 7 K ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale11 L C ALA 5 L ALA 15 1_555 L N KHB 6 L KHB 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale12 L C KHB 6 L KHB 16 1_555 L N ARG 7 L ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5ZGC 
_atom_sites.fract_transf_matrix[1][1]    0.00722 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00722 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004117 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 ZN A 1 401 3 ZN ZN . 
N 3 ZN B 1 401 5 ZN ZN . 
O 3 ZN C 1 401 4 ZN ZN . 
P 3 ZN D 1 401 2 ZN ZN . 
Q 3 ZN E 1 401 1 ZN ZN . 
R 4 HOH A 1 501 61 HOH HOH . 
R 4 HOH A 2 502 33 HOH HOH . 
R 4 HOH A 3 503 8 HOH HOH . 
R 4 HOH A 4 504 16 HOH HOH . 
R 4 HOH A 5 505 14 HOH HOH . 
R 4 HOH A 6 506 48 HOH HOH . 
R 4 HOH A 7 507 6 HOH HOH . 
R 4 HOH A 8 508 20 HOH HOH . 
R 4 HOH A 9 509 29 HOH HOH . 
R 4 HOH A 10 510 31 HOH HOH . 
R 4 HOH A 11 511 40 HOH HOH . 
R 4 HOH A 12 512 18 HOH HOH . 
R 4 HOH A 13 513 7 HOH HOH . 
S 4 HOH B 1 501 3 HOH HOH . 
S 4 HOH B 2 502 26 HOH HOH . 
S 4 HOH B 3 503 22 HOH HOH . 
S 4 HOH B 4 504 51 HOH HOH . 
S 4 HOH B 5 505 24 HOH HOH . 
S 4 HOH B 6 506 49 HOH HOH . 
S 4 HOH B 7 507 23 HOH HOH . 
S 4 HOH B 8 508 5 HOH HOH . 
S 4 HOH B 9 509 35 HOH HOH . 
S 4 HOH B 10 510 50 HOH HOH . 
S 4 HOH B 11 511 38 HOH HOH . 
S 4 HOH B 12 512 58 HOH HOH . 
S 4 HOH B 13 513 57 HOH HOH . 
T 4 HOH C 1 501 27 HOH HOH . 
T 4 HOH C 2 502 60 HOH HOH . 
T 4 HOH C 3 503 34 HOH HOH . 
T 4 HOH C 4 504 54 HOH HOH . 
T 4 HOH C 5 505 17 HOH HOH . 
T 4 HOH C 6 506 44 HOH HOH . 
T 4 HOH C 7 507 42 HOH HOH . 
T 4 HOH C 8 508 45 HOH HOH . 
T 4 HOH C 9 509 13 HOH HOH . 
T 4 HOH C 10 510 11 HOH HOH . 
T 4 HOH C 11 511 19 HOH HOH . 
T 4 HOH C 12 512 28 HOH HOH . 
T 4 HOH C 13 513 10 HOH HOH . 
T 4 HOH C 14 514 56 HOH HOH . 
U 4 HOH D 1 501 46 HOH HOH . 
U 4 HOH D 2 502 53 HOH HOH . 
U 4 HOH D 3 503 41 HOH HOH . 
U 4 HOH D 4 504 55 HOH HOH . 
U 4 HOH D 5 505 39 HOH HOH . 
U 4 HOH D 6 506 59 HOH HOH . 
V 4 HOH E 1 501 30 HOH HOH . 
V 4 HOH E 2 502 37 HOH HOH . 
V 4 HOH E 3 503 21 HOH HOH . 
V 4 HOH E 4 504 9 HOH HOH . 
V 4 HOH E 5 505 32 HOH HOH . 
V 4 HOH E 6 506 15 HOH HOH . 
V 4 HOH E 7 507 43 HOH HOH . 
V 4 HOH E 8 508 2 HOH HOH . 
V 4 HOH E 9 509 47 HOH HOH . 
W 4 HOH F 1 401 1 HOH HOH . 
W 4 HOH F 2 402 25 HOH HOH . 
W 4 HOH F 3 403 52 HOH HOH . 
W 4 HOH F 4 404 4 HOH HOH . 
X 4 HOH G 1 101 36 HOH HOH . 
Y 4 HOH I 1 101 12 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         O 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -2.725 
_atom_site.Cartn_y               -27.372 
_atom_site.Cartn_z               -32.713 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        52.59 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#