data_5ZGH # _model_server_result.job_id RTKtbPsPYpTGDD4UfFdrVA _model_server_result.datetime_utc '2025-02-27 09:27:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zgh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PB","auth_seq_id":219}' # _entry.id 5ZGH # _exptl.entry_id 5ZGH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 186.334 _entity.id 18 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1-DODECANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZGH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE,QE,RE,SE,TE,UE,VE,WE,XE,YE,ZE,AF,BF,CF,DF,EF,FF,GF,HF,IF,JF,KF,LF,MF,NF,OF,PF,QF,RF,SF,TF,UF,VF,WF,XF,YF,ZF,AG,BG,CG,DG,EG,FG,GG,HG,IG,JG,KG,LG,MG,NG _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 18 _struct_asym.id PB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 I SG CYS 34 F CYS 34 1_555 I SG CYS 87 F CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 PB O2S 1DO . 3 1DO 219 1_555 QD C1 BGC . A BGC 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? metalc ? metalc1 D OE1 GLN 112 A GLN 112 1_555 WB MG CLA . A CLA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc2 D OE1 GLN 120 A GLN 120 1_555 XB MG CLA . A CLA 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? # _chem_comp.formula 'C12 H26 O' _chem_comp.formula_weight 186.334 _chem_comp.id 1DO _chem_comp.mon_nstd_flag . _chem_comp.name 1-DODECANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2S C1 1DO sing 1 n n O2S H2S 1DO sing 2 n n C1 C2 1DO sing 3 n n C1 H1C1 1DO sing 4 n n C1 H1C2 1DO sing 5 n n C2 C3 1DO sing 6 n n C2 H2C1 1DO sing 7 n n C2 H2C2 1DO sing 8 n n C3 C4 1DO sing 9 n n C3 H3C1 1DO sing 10 n n C3 H3C2 1DO sing 11 n n C4 C5 1DO sing 12 n n C4 H4C1 1DO sing 13 n n C4 H4C2 1DO sing 14 n n C5 C6 1DO sing 15 n n C5 H5C1 1DO sing 16 n n C5 H5C2 1DO sing 17 n n C6 C7 1DO sing 18 n n C6 H6C1 1DO sing 19 n n C6 H6C2 1DO sing 20 n n C7 C8 1DO sing 21 n n C7 H7C1 1DO sing 22 n n C7 H7C2 1DO sing 23 n n C8 C9 1DO sing 24 n n C8 H8C1 1DO sing 25 n n C8 H8C2 1DO sing 26 n n C9 C10 1DO sing 27 n n C9 H9C1 1DO sing 28 n n C9 H9C2 1DO sing 29 n n C10 C11 1DO sing 30 n n C10 H101 1DO sing 31 n n C10 H102 1DO sing 32 n n C11 C12 1DO sing 33 n n C11 H111 1DO sing 34 n n C11 H112 1DO sing 35 n n C12 H121 1DO sing 36 n n C12 H122 1DO sing 37 n n C12 H123 1DO sing 38 n n # _atom_sites.entry_id 5ZGH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 16 CLA 1 1 601 601 CLA CLA . Q 16 CLA 1 1 602 602 CLA CLA . R 16 CLA 1 1 603 603 CLA CLA . S 16 CLA 1 1 604 604 CLA CLA . T 16 CLA 1 1 605 606 CLA CLA . U 16 CLA 1 1 606 607 CLA CLA . V 16 CLA 1 1 607 609 CLA CLA . W 16 CLA 1 1 608 610 CLA CLA . X 16 CLA 1 1 609 611 CLA CLA . Y 16 CLA 1 1 610 612 CLA CLA . Z 16 CLA 1 1 611 613 CLA CLA . AA 16 CLA 1 1 612 615 CLA CLA . BA 17 ZEX 1 1 613 620 ZEX ZEX . CA 17 ZEX 1 1 614 621 ZEX ZEX . DA 17 ZEX 1 1 615 622 ZEX ZEX . EA 17 ZEX 1 1 616 623 ZEX ZEX . FA 17 ZEX 1 1 617 624 ZEX ZEX . GA 16 CLA 2 1 601 601 CLA CLA . HA 16 CLA 2 1 602 602 CLA CLA . IA 16 CLA 2 1 603 603 CLA CLA . JA 16 CLA 2 1 604 604 CLA CLA . KA 16 CLA 2 1 605 606 CLA CLA . LA 16 CLA 2 1 606 607 CLA CLA . MA 16 CLA 2 1 607 609 CLA CLA . NA 16 CLA 2 1 608 610 CLA CLA . OA 16 CLA 2 1 609 611 CLA CLA . PA 16 CLA 2 1 610 612 CLA CLA . QA 16 CLA 2 1 611 613 CLA CLA . RA 16 CLA 2 1 612 615 CLA CLA . SA 16 CLA 2 1 613 616 CLA CLA . TA 17 ZEX 2 1 614 620 ZEX ZEX . UA 17 ZEX 2 1 615 621 ZEX ZEX . VA 17 ZEX 2 1 616 623 ZEX ZEX . WA 17 ZEX 2 1 617 624 ZEX ZEX . XA 17 ZEX 3 1 201 622 ZEX ZEX . YA 16 CLA 3 1 202 601 CLA CLA . ZA 16 CLA 3 1 203 602 CLA CLA . AB 16 CLA 3 1 204 603 CLA CLA . BB 16 CLA 3 1 205 604 CLA CLA . CB 16 CLA 3 1 206 606 CLA CLA . DB 16 CLA 3 1 207 607 CLA CLA . EB 16 CLA 3 1 208 609 CLA CLA . FB 16 CLA 3 1 209 610 CLA CLA . GB 16 CLA 3 1 210 611 CLA CLA . HB 16 CLA 3 1 211 612 CLA CLA . IB 16 CLA 3 1 212 613 CLA CLA . JB 16 CLA 3 1 213 615 CLA CLA . KB 17 ZEX 3 1 214 620 ZEX ZEX . LB 17 ZEX 3 1 215 621 ZEX ZEX . MB 17 ZEX 3 1 216 622 ZEX ZEX . NB 17 ZEX 3 1 217 623 ZEX ZEX . OB 17 ZEX 3 1 218 624 ZEX ZEX . PB 18 1DO 3 1 219 855 1DO UNL . QB 19 CL0 A 1 801 801 CL0 CL0 . RB 16 CLA A 1 802 804 CLA CLA . SB 16 CLA A 1 803 805 CLA CLA . TB 16 CLA A 1 804 806 CLA CLA . UB 16 CLA A 1 805 807 CLA CLA . VB 16 CLA A 1 806 808 CLA CLA . WB 16 CLA A 1 807 809 CLA CLA . XB 16 CLA A 1 808 810 CLA CLA . YB 16 CLA A 1 809 811 CLA CLA . ZB 16 CLA A 1 810 812 CLA CLA . AC 16 CLA A 1 811 813 CLA CLA . BC 16 CLA A 1 812 814 CLA CLA . CC 16 CLA A 1 813 815 CLA CLA . DC 16 CLA A 1 814 816 CLA CLA . EC 16 CLA A 1 815 817 CLA CLA . FC 16 CLA A 1 816 818 CLA CLA . GC 16 CLA A 1 817 819 CLA CLA . HC 16 CLA A 1 818 820 CLA CLA . IC 16 CLA A 1 819 821 CLA CLA . JC 16 CLA A 1 820 822 CLA CLA . KC 16 CLA A 1 821 823 CLA CLA . LC 16 CLA A 1 822 824 CLA CLA . MC 16 CLA A 1 823 825 CLA CLA . NC 16 CLA A 1 824 826 CLA CLA . OC 16 CLA A 1 825 827 CLA CLA . PC 16 CLA A 1 826 828 CLA CLA . QC 16 CLA A 1 827 829 CLA CLA . RC 16 CLA A 1 828 830 CLA CLA . SC 16 CLA A 1 829 831 CLA CLA . TC 16 CLA A 1 830 832 CLA CLA . UC 16 CLA A 1 831 834 CLA CLA . VC 16 CLA A 1 832 835 CLA CLA . WC 16 CLA A 1 833 836 CLA CLA . XC 16 CLA A 1 834 837 CLA CLA . YC 16 CLA A 1 835 838 CLA CLA . ZC 16 CLA A 1 836 839 CLA CLA . AD 16 CLA A 1 837 840 CLA CLA . BD 16 CLA A 1 838 842 CLA CLA . CD 16 CLA A 1 839 843 CLA CLA . DD 20 PQN A 1 840 844 PQN PQN . ED 21 LHG A 1 841 846 LHG LHG . FD 21 LHG A 1 842 847 LHG LHG . GD 22 BCR A 1 843 848 BCR BCR . HD 22 BCR A 1 844 849 BCR BCR . ID 22 BCR A 1 845 850 BCR BCR . JD 22 BCR A 1 846 851 BCR BCR . KD 22 BCR A 1 847 852 BCR BCR . LD 23 SF4 A 1 848 853 SF4 SF4 . MD 22 BCR A 1 849 856 BCR BCR . ND 16 CLA A 1 850 803 CLA CLA . OD 16 CLA A 1 851 831 CLA CLA . PD 16 CLA A 1 852 301 CLA CLA . QD 24 BGC A 1 853 855 BGC UNL . RD 16 CLA B 1 801 802 CLA CLA . SD 16 CLA B 1 802 803 CLA CLA . TD 16 CLA B 1 803 841 CLA CLA . UD 16 CLA B 1 804 854 CLA CLA . VD 16 CLA B 1 805 802 CLA CLA . WD 16 CLA B 1 806 804 CLA CLA . XD 16 CLA B 1 807 805 CLA CLA . YD 16 CLA B 1 808 806 CLA CLA . ZD 16 CLA B 1 809 807 CLA CLA . AE 16 CLA B 1 810 808 CLA CLA . BE 16 CLA B 1 811 809 CLA CLA . CE 16 CLA B 1 812 810 CLA CLA . DE 16 CLA B 1 813 811 CLA CLA . EE 16 CLA B 1 814 812 CLA CLA . FE 16 CLA B 1 815 813 CLA CLA . GE 16 CLA B 1 816 814 CLA CLA . HE 16 CLA B 1 817 815 CLA CLA . IE 16 CLA B 1 818 816 CLA CLA . JE 16 CLA B 1 819 817 CLA CLA . KE 16 CLA B 1 820 818 CLA CLA . LE 16 CLA B 1 821 819 CLA CLA . ME 16 CLA B 1 822 820 CLA CLA . NE 16 CLA B 1 823 821 CLA CLA . OE 16 CLA B 1 824 822 CLA CLA . PE 16 CLA B 1 825 823 CLA CLA . QE 16 CLA B 1 826 824 CLA CLA . RE 16 CLA B 1 827 825 CLA CLA . SE 16 CLA B 1 828 826 CLA CLA . TE 16 CLA B 1 829 827 CLA CLA . UE 16 CLA B 1 830 828 CLA CLA . VE 16 CLA B 1 831 829 CLA CLA . WE 16 CLA B 1 832 830 CLA CLA . XE 16 CLA B 1 833 832 CLA CLA . YE 16 CLA B 1 834 833 CLA CLA . ZE 16 CLA B 1 835 834 CLA CLA . AF 16 CLA B 1 836 835 CLA CLA . BF 16 CLA B 1 837 836 CLA CLA . CF 16 CLA B 1 838 837 CLA CLA . DF 16 CLA B 1 839 838 CLA CLA . EF 16 CLA B 1 840 839 CLA CLA . FF 16 CLA B 1 841 840 CLA CLA . GF 16 CLA B 1 842 841 CLA CLA . HF 20 PQN B 1 843 842 PQN PQN . IF 22 BCR B 1 844 843 BCR BCR . JF 22 BCR B 1 845 844 BCR BCR . KF 22 BCR B 1 846 845 BCR BCR . LF 22 BCR B 1 847 846 BCR BCR . MF 22 BCR B 1 848 847 BCR BCR . NF 22 BCR B 1 849 848 BCR BCR . OF 25 DGD B 1 850 850 DGD DGD . PF 23 SF4 C 1 101 101 SF4 SF4 . QF 23 SF4 C 1 102 102 SF4 SF4 . RF 22 BCR F 1 801 801 BCR BCR . SF 16 CLA F 1 802 303 CLA CLA . TF 16 CLA F 1 803 304 CLA CLA . UF 22 BCR F 1 804 305 BCR BCR . VF 22 BCR I 1 101 101 BCR BCR . WF 16 CLA J 1 101 3002 CLA CLA . XF 22 BCR J 1 102 3003 BCR BCR . YF 22 BCR J 1 103 3004 BCR BCR . ZF 26 3XQ J 1 104 3005 3XQ UNL . AG 16 CLA K 1 101 4002 CLA CLA . BG 16 CLA K 1 102 4003 CLA CLA . CG 22 BCR K 1 103 4004 BCR BCR . DG 16 CLA L 1 201 833 CLA CLA . EG 22 BCR L 1 202 201 BCR BCR . FG 16 CLA L 1 203 202 CLA CLA . GG 16 CLA L 1 204 203 CLA CLA . HG 16 CLA L 1 205 204 CLA CLA . IG 22 BCR L 1 206 205 BCR BCR . JG 22 BCR L 1 207 206 BCR BCR . KG 16 CLA O 1 201 845 CLA CLA . LG 16 CLA O 1 202 201 CLA CLA . MG 16 CLA O 1 203 202 CLA CLA . NG 16 CLA O 1 204 203 CLA CLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2S 1DO . . . PB 18 103.916 190.161 161.183 1 136.95 ? O2S 1DO 219 3 1 HETATM 2 C C1 1DO . . . PB 18 103.126 190.167 162.348 1 136.95 ? C1 1DO 219 3 1 HETATM 3 C C2 1DO . . . PB 18 101.753 189.76 161.901 1 136.95 ? C2 1DO 219 3 1 HETATM 4 C C3 1DO . . . PB 18 101.616 188.412 161.266 1 136.95 ? C3 1DO 219 3 1 HETATM 5 C C4 1DO . . . PB 18 100.733 188.564 160.055 1 136.95 ? C4 1DO 219 3 1 HETATM 6 C C5 1DO . . . PB 18 101.357 189.466 159.039 1 136.95 ? C5 1DO 219 3 1 HETATM 7 C C6 1DO . . . PB 18 100.385 189.892 157.987 1 136.95 ? C6 1DO 219 3 1 HETATM 8 C C7 1DO . . . PB 18 99.232 190.627 158.607 1 136.95 ? C7 1DO 219 3 1 HETATM 9 C C8 1DO . . . PB 18 98.069 190.551 157.681 1 136.95 ? C8 1DO 219 3 1 HETATM 10 C C9 1DO . . . PB 18 96.764 190.94 158.297 1 136.95 ? C9 1DO 219 3 1 HETATM 11 C C10 1DO . . . PB 18 95.677 190.516 157.348 1 136.95 ? C10 1DO 219 3 1 HETATM 12 C C11 1DO . . . PB 18 94.395 191.227 157.638 1 136.95 ? C11 1DO 219 3 1 HETATM 13 C C12 1DO . . . PB 18 93.374 190.99 156.577 1 136.95 ? C12 1DO 219 3 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #