data_5ZH4 # _model_server_result.job_id S94elOedvQr8YV4c7tPbmQ _model_server_result.datetime_utc '2024-10-20 01:26:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 5ZH4 # _exptl.entry_id 5ZH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.195 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LYSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZH4 _cell.length_a 52.62 _cell.length_b 126.04 _cell.length_c 181.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C6 H15 N2 O2 1' _chem_comp.formula_weight 147.195 _chem_comp.id LYS _chem_comp.mon_nstd_flag y _chem_comp.name LYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LYS sing 235 n n N H LYS sing 236 n n N H2 LYS sing 237 n n CA C LYS sing 238 n n CA CB LYS sing 239 n n CA HA LYS sing 240 n n C O LYS doub 241 n n C OXT LYS sing 242 n n CB CG LYS sing 243 n n CB HB2 LYS sing 244 n n CB HB3 LYS sing 245 n n CG CD LYS sing 246 n n CG HG2 LYS sing 247 n n CG HG3 LYS sing 248 n n CD CE LYS sing 249 n n CD HD2 LYS sing 250 n n CD HD3 LYS sing 251 n n CE NZ LYS sing 252 n n CE HE2 LYS sing 253 n n CE HE3 LYS sing 254 n n NZ HZ1 LYS sing 255 n n NZ HZ2 LYS sing 256 n n NZ HZ3 LYS sing 257 n n OXT HXT LYS sing 258 n n # _atom_sites.entry_id 5ZH4 _atom_sites.fract_transf_matrix[1][1] 0.019004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LYS A 1 601 601 LYS LYS . D 3 9CC A 1 602 602 9CC K27 . E 4 CL A 1 603 1 CL CL . F 4 CL A 1 604 3 CL CL . G 2 LYS B 1 601 601 LYS LYS . H 3 9CC B 1 602 602 9CC K27 . I 4 CL B 1 603 2 CL CL . J 4 CL B 1 604 4 CL CL . K 4 CL B 1 605 5 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LYS . . . G 2 3.997 10.878 -22.73 0.7 51.21 ? N LYS 601 B 1 HETATM 2 C CA LYS . . . G 2 3.858 12.123 -23.508 0.7 47.33 ? CA LYS 601 B 1 HETATM 3 C C LYS . . . G 2 3.182 11.811 -24.794 0.7 45.78 ? C LYS 601 B 1 HETATM 4 O O LYS . . . G 2 2.737 12.685 -25.542 0.7 46.62 ? O LYS 601 B 1 HETATM 5 C CB LYS . . . G 2 5.217 12.723 -23.784 0.7 47.51 ? CB LYS 601 B 1 HETATM 6 C CG LYS . . . G 2 5.547 13.874 -22.857 0.7 51.22 ? CG LYS 601 B 1 HETATM 7 C CD LYS . . . G 2 5.877 13.409 -21.469 0.7 48.85 ? CD LYS 601 B 1 HETATM 8 C CE LYS . . . G 2 5.889 14.577 -20.509 0.7 47.3 ? CE LYS 601 B 1 HETATM 9 N NZ LYS . . . G 2 5.716 14.041 -19.131 0.7 46.74 ? NZ LYS 601 B 1 HETATM 10 O OXT LYS . . . G 2 3.068 10.642 -25.09 0.7 45.36 ? OXT LYS 601 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #